Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99285 * 2 1 4 4 N 1.46901 * 109.46851 * 124.15676 * 3 2 1 5 5 C 1.46897 * 111.00287 * 300.86870 * 4 3 2 6 6 C 1.50699 * 109.46699 * 288.24987 * 5 4 3 7 7 H 1.07995 * 120.00459 * 354.76702 * 6 5 4 8 8 C 1.37881 * 119.99759 * 174.76627 * 6 5 4 9 9 N 1.31515 * 119.99805 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46915 * 90.00671 * 10 8 6 12 12 H 1.48501 * 109.47285 * 210.00009 * 10 8 6 13 13 H 1.48496 * 109.47417 * 330.00136 * 10 8 6 14 14 C 1.46897 * 111.00073 * 64.82335 * 4 3 2 15 15 C 1.50709 * 109.47235 * 66.04236 * 14 4 3 16 16 C 1.35310 * 126.04027 * 260.02432 * 15 14 4 17 17 N 1.34954 * 107.74619 * 179.97438 * 16 15 14 18 18 C 1.46493 * 126.03775 * 179.97438 * 17 16 15 19 19 N 1.40083 * 107.92414 * 0.24691 * 17 16 15 20 20 C 1.30843 * 108.20377 * 359.58459 * 19 17 16 21 21 C 1.50702 * 125.89930 * 180.14492 * 20 19 17 22 22 F 1.39905 * 109.46908 * 30.31072 * 21 20 19 23 23 F 1.39903 * 109.47089 * 150.30568 * 21 20 19 24 24 H 1.08000 * 119.99501 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00625 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.00113 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47672 * 4.15436 * 3 2 1 28 28 H 1.09003 * 109.46367 * 244.15297 * 3 2 1 29 29 H 1.09007 * 109.46897 * 48.24690 * 5 4 3 30 30 H 1.08995 * 109.47046 * 168.24788 * 5 4 3 31 31 H 0.97001 * 119.99689 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47554 * 306.04526 * 14 4 3 33 33 H 1.08995 * 109.47541 * 186.04446 * 14 4 3 34 34 H 1.07995 * 126.13067 * 0.02562 * 16 15 14 35 35 H 1.08996 * 109.47494 * 90.00464 * 18 17 16 36 36 H 1.09005 * 109.46917 * 210.00150 * 18 17 16 37 37 H 1.08996 * 109.47234 * 330.00178 * 18 17 16 38 38 H 1.08999 * 109.47357 * 270.30953 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9816 1.3405 1.1461 5 6 2.2495 1.1997 2.4118 6 6 1.4782 2.4643 2.6892 7 1 1.5925 3.3200 2.0403 8 6 0.6263 2.5288 3.7715 9 7 0.4874 1.4869 4.5619 10 14 -0.3293 4.0965 4.1157 11 1 -1.6336 4.0467 3.4075 12 1 -0.5639 4.2225 5.5766 13 1 0.4497 5.2664 3.6368 14 6 4.0198 0.3088 1.0209 15 6 4.9043 0.6266 -0.1572 16 6 4.8263 0.0648 -1.3857 17 7 5.7891 0.6178 -2.1528 18 6 6.0621 0.2989 -3.5563 19 7 6.4854 1.5461 -1.3681 20 6 5.9507 1.5546 -0.1739 21 6 6.3904 2.4115 0.9851 22 9 6.9190 3.6135 0.5022 23 9 5.2918 2.6826 1.8079 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3574 2.1323 0.0744 28 1 2.6330 1.3958 -0.9249 29 1 1.5577 0.3604 2.3400 30 1 2.9560 1.0199 3.2221 31 1 -0.1116 1.5325 5.3235 32 1 3.5499 -0.6632 0.8707 33 1 4.6203 0.2853 1.9302 34 1 4.1196 -0.6902 -1.6969 35 1 5.4737 0.9539 -4.1989 36 1 7.1225 0.4448 -3.7624 37 1 5.7934 -0.7391 -3.7520 38 1 7.1524 1.8838 1.5586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292042795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = 14.334800 kcal Electronic energy + Delta-G solvation = -23265.225344 eV Core-core repulsion = 19588.521738 eV Total energy + Delta-G solvation = -3676.703606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.46889 -46.46127 -41.24942 -37.23978 -33.77107 -32.71391 -32.19581 -30.46527 -28.56821 -27.05213 -26.22316 -24.74792 -23.22657 -20.89023 -20.86408 -19.98010 -18.70281 -17.20183 -16.87273 -16.48732 -16.06987 -15.64732 -15.52898 -14.98943 -14.57756 -14.21465 -13.84412 -13.63985 -13.41773 -13.08875 -12.87998 -12.82695 -12.71886 -12.30555 -12.08846 -12.02313 -11.37956 -11.09458 -10.98892 -10.83528 -10.63986 -10.54276 -10.51649 -10.34578 -9.83689 -9.39938 -9.14967 -8.69877 -8.33083 -8.28075 -7.05813 -5.90350 -3.89505 1.78279 2.35108 2.63363 2.93646 3.38919 3.45280 3.51222 3.96888 4.32505 4.53880 4.59627 4.78738 4.95230 5.06892 5.19213 5.21996 5.31432 5.44917 5.47612 5.56942 5.63533 5.82368 5.91909 6.13899 6.27961 6.33124 6.46575 6.50567 6.76083 6.96567 7.19828 7.36166 7.41983 7.53580 7.59110 7.95564 8.23452 8.33537 8.69310 9.18670 9.73618 11.20199 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.005668 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.315765 B = 4938.490434 C = 5978.458358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.180 4.180 3 C 0.093 3.907 4 N -0.515 5.515 5 C 0.193 3.807 6 C -0.494 4.494 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.124 3.876 15 C -0.179 4.179 16 C 0.052 3.948 17 N -0.372 5.372 18 C 0.104 3.896 19 N -0.268 5.268 20 C 0.015 3.985 21 C 0.355 3.645 22 F -0.200 7.200 23 F -0.157 7.157 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.023 0.977 31 H 0.258 0.742 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.224 -5.849 -13.538 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.200 4.200 3 C -0.035 4.035 4 N -0.238 5.238 5 C 0.069 3.931 6 C -0.533 4.533 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.006 4.006 15 C -0.191 4.191 16 C -0.093 4.093 17 N -0.156 5.156 18 C -0.037 4.037 19 N -0.092 5.092 20 C -0.152 4.152 21 C 0.299 3.701 22 F -0.182 7.182 23 F -0.138 7.138 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.192 0.808 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.288 -4.938 -14.254 18.841 hybrid contribution -1.779 -0.392 0.668 1.940 sum 9.510 -5.330 -13.586 17.419 Atomic orbital electron populations 1.23682 0.96089 1.01029 1.00933 1.23558 0.96650 0.99817 0.99928 1.21199 0.94458 0.94041 0.93850 1.62389 1.12884 1.44718 1.03768 1.19740 0.92140 0.96888 0.84361 1.21128 1.22834 0.98797 1.10498 0.92094 1.24931 0.97091 0.96205 0.96288 1.69958 1.38279 1.29418 1.16473 0.86593 0.80154 0.84070 0.77182 1.20975 1.21430 1.19810 1.20375 0.92881 0.93628 0.93682 1.19943 1.00786 1.01495 0.96879 1.22337 0.94794 1.00964 0.91245 1.48368 1.25498 1.31207 1.10486 1.21847 1.03697 1.01672 0.76533 1.77252 1.19307 1.10336 1.02269 1.22726 0.98151 0.99783 0.94555 1.19357 0.85145 0.80306 0.85260 1.92993 1.86667 1.49132 1.89366 1.93260 1.55007 1.94033 1.71469 0.89844 0.88548 0.88827 0.90133 0.92539 0.97839 0.95866 0.93207 0.94955 0.90564 0.80808 0.90675 0.89351 0.89449 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 14.32 29.01 0.42 -2.73 16 2 C -0.18 -3.17 7.40 -36.03 -0.27 -3.44 16 3 C 0.09 1.79 5.49 -4.97 -0.03 1.76 16 4 N -0.52 -10.89 3.73 -238.96 -0.89 -11.78 16 5 C 0.19 4.95 4.58 -4.98 -0.02 4.92 16 6 C -0.49 -13.91 8.53 -34.44 -0.29 -14.20 16 7 H 0.06 1.75 7.65 -52.49 -0.40 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.12 2.17 4.24 -4.97 -0.02 2.14 16 15 C -0.18 -2.80 4.67 -105.05 -0.49 -3.29 16 16 C 0.05 0.67 10.58 -17.22 -0.18 0.48 16 17 N -0.37 -4.67 4.01 -68.17 -0.27 -4.94 16 18 C 0.10 0.76 11.47 59.84 0.69 1.45 16 19 N -0.27 -4.19 12.51 33.67 0.42 -3.77 16 20 C 0.01 0.24 6.84 -82.40 -0.56 -0.32 16 21 C 0.36 5.52 5.79 36.01 0.21 5.73 16 22 F -0.20 -3.35 17.27 2.25 0.04 -3.31 16 23 F -0.16 -3.03 14.86 2.25 0.03 -3.00 16 24 H 0.08 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 26 H 0.09 1.50 6.82 -52.49 -0.36 1.15 16 27 H 0.08 1.73 7.05 -51.93 -0.37 1.36 16 28 H 0.06 1.00 6.51 -51.93 -0.34 0.66 16 29 H 0.00 0.10 6.69 -51.93 -0.35 -0.24 16 30 H 0.02 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.03 0.54 6.37 -51.93 -0.33 0.20 16 33 H 0.08 1.36 7.51 -51.93 -0.39 0.97 16 34 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -33.43 327.14 -5.70 -39.13 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.02 Total: -2.21 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.66 Total: -6.01 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.01 Total: -46.59 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.07 Total: -6.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.43 -5.70 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292042795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.464 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds