Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99285 * 2 1 4 4 N 1.46901 * 109.46851 * 124.15676 * 3 2 1 5 5 C 1.46897 * 111.00287 * 300.86870 * 4 3 2 6 6 C 1.50699 * 109.46699 * 288.24987 * 5 4 3 7 7 H 1.07995 * 120.00459 * 354.76702 * 6 5 4 8 8 C 1.37881 * 119.99759 * 174.76627 * 6 5 4 9 9 N 1.31515 * 119.99805 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46915 * 90.00671 * 10 8 6 12 12 H 1.48501 * 109.47285 * 210.00009 * 10 8 6 13 13 H 1.48496 * 109.47417 * 330.00136 * 10 8 6 14 14 C 1.46897 * 111.00073 * 64.82335 * 4 3 2 15 15 C 1.50709 * 109.47235 * 66.04236 * 14 4 3 16 16 C 1.35310 * 126.04027 * 260.02432 * 15 14 4 17 17 N 1.34954 * 107.74619 * 179.97438 * 16 15 14 18 18 C 1.46493 * 126.03775 * 179.97438 * 17 16 15 19 19 N 1.40083 * 107.92414 * 0.24691 * 17 16 15 20 20 C 1.30843 * 108.20377 * 359.58459 * 19 17 16 21 21 C 1.50702 * 125.89930 * 180.14492 * 20 19 17 22 22 F 1.39905 * 109.46908 * 30.31072 * 21 20 19 23 23 F 1.39903 * 109.47089 * 150.30568 * 21 20 19 24 24 H 1.08000 * 119.99501 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00625 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.00113 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47672 * 4.15436 * 3 2 1 28 28 H 1.09003 * 109.46367 * 244.15297 * 3 2 1 29 29 H 1.09007 * 109.46897 * 48.24690 * 5 4 3 30 30 H 1.08995 * 109.47046 * 168.24788 * 5 4 3 31 31 H 0.97001 * 119.99689 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47554 * 306.04526 * 14 4 3 33 33 H 1.08995 * 109.47541 * 186.04446 * 14 4 3 34 34 H 1.07995 * 126.13067 * 0.02562 * 16 15 14 35 35 H 1.08996 * 109.47494 * 90.00464 * 18 17 16 36 36 H 1.09005 * 109.46917 * 210.00150 * 18 17 16 37 37 H 1.08996 * 109.47234 * 330.00178 * 18 17 16 38 38 H 1.08999 * 109.47357 * 270.30953 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9816 1.3405 1.1461 5 6 2.2495 1.1997 2.4118 6 6 1.4782 2.4643 2.6892 7 1 1.5925 3.3200 2.0403 8 6 0.6263 2.5288 3.7715 9 7 0.4874 1.4869 4.5619 10 14 -0.3293 4.0965 4.1157 11 1 -1.6336 4.0467 3.4075 12 1 -0.5639 4.2225 5.5766 13 1 0.4497 5.2664 3.6368 14 6 4.0198 0.3088 1.0209 15 6 4.9043 0.6266 -0.1572 16 6 4.8263 0.0648 -1.3857 17 7 5.7891 0.6178 -2.1528 18 6 6.0621 0.2989 -3.5563 19 7 6.4854 1.5461 -1.3681 20 6 5.9507 1.5546 -0.1739 21 6 6.3904 2.4115 0.9851 22 9 6.9190 3.6135 0.5022 23 9 5.2918 2.6826 1.8079 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3574 2.1323 0.0744 28 1 2.6330 1.3958 -0.9249 29 1 1.5577 0.3604 2.3400 30 1 2.9560 1.0199 3.2221 31 1 -0.1116 1.5325 5.3235 32 1 3.5499 -0.6632 0.8707 33 1 4.6203 0.2853 1.9302 34 1 4.1196 -0.6902 -1.6969 35 1 5.4737 0.9539 -4.1989 36 1 7.1225 0.4448 -3.7624 37 1 5.7934 -0.7391 -3.7520 38 1 7.1524 1.8838 1.5586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292042795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -7.354375 kcal Electronic energy + Delta-G solvation = -23266.165857 eV Core-core repulsion = 19588.521738 eV Total energy + Delta-G solvation = -3677.644119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.77472 -47.80400 -42.31958 -38.83111 -34.87425 -34.67044 -33.62703 -31.82327 -29.60112 -28.85491 -27.60525 -26.09775 -24.77538 -22.58548 -21.95220 -21.17968 -20.13841 -18.42427 -18.29748 -17.89988 -17.76765 -16.90908 -16.71604 -16.42383 -16.10416 -15.85148 -15.35556 -14.89124 -14.74797 -14.36696 -14.11388 -14.08372 -13.86231 -13.80483 -13.43648 -13.25607 -13.05888 -12.82406 -12.54510 -12.46878 -12.22683 -12.17308 -12.05842 -11.84928 -11.67336 -11.20019 -10.51942 -10.42737 -10.11875 -9.44254 -8.72851 -8.09068 -6.16273 0.73993 1.41191 1.42771 1.44299 1.47383 1.54411 1.56040 2.46523 2.88788 3.22738 3.24474 3.54518 3.69638 3.95185 4.09616 4.13398 4.15554 4.26296 4.37406 4.46216 4.56106 4.62625 4.71934 4.78566 4.94253 5.03465 5.03639 5.23590 5.32897 5.35532 5.48520 5.75754 5.78728 6.00131 6.05465 6.23578 6.50635 6.55439 6.81999 7.00313 7.51801 9.00095 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.005668 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.315765 B = 4938.490434 C = 5978.458358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.182 4.182 3 C 0.099 3.901 4 N -0.527 5.527 5 C 0.214 3.786 6 C -0.507 4.507 7 H 0.049 0.951 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.954 3.046 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.131 3.869 15 C -0.208 4.208 16 C 0.074 3.926 17 N -0.364 5.364 18 C 0.092 3.908 19 N -0.294 5.294 20 C -0.001 4.001 21 C 0.346 3.654 22 F -0.210 7.210 23 F -0.185 7.185 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.050 0.950 28 H 0.076 0.924 29 H -0.015 1.015 30 H -0.005 1.005 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.211 0.789 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.312 -6.857 -15.446 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.201 4.201 3 C -0.029 4.029 4 N -0.249 5.249 5 C 0.088 3.912 6 C -0.545 4.545 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.573 5.573 10 Si 0.780 3.220 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.003 3.997 15 C -0.219 4.219 16 C -0.073 4.073 17 N -0.146 5.146 18 C -0.047 4.047 19 N -0.118 5.118 20 C -0.167 4.167 21 C 0.291 3.709 22 F -0.191 7.191 23 F -0.166 7.166 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.003 0.997 30 H 0.013 0.987 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.401 -5.941 -16.202 20.683 hybrid contribution -1.745 -0.118 1.132 2.083 sum 9.656 -6.058 -15.071 18.896 Atomic orbital electron populations 1.23822 0.96308 1.01472 1.00620 1.23566 0.96705 0.99726 1.00111 1.21077 0.93994 0.94091 0.93754 1.62229 1.13285 1.46940 1.02438 1.19302 0.91005 0.95007 0.85901 1.21374 1.23307 0.99414 1.10429 0.93290 1.25687 0.98023 0.99212 0.96062 1.70063 1.39018 1.31239 1.16943 0.85614 0.78955 0.80231 0.77204 1.19960 1.20802 1.19751 1.20250 0.91907 0.93075 0.94498 1.19773 1.01341 1.03351 0.97473 1.22780 0.94353 1.00173 0.90035 1.48802 1.24420 1.29615 1.11783 1.22322 1.04617 1.04094 0.73716 1.77198 1.20477 1.11803 1.02358 1.22751 0.98824 1.00253 0.94893 1.19869 0.85182 0.80123 0.85715 1.92960 1.86675 1.49963 1.89552 1.93196 1.56700 1.94271 1.72395 0.87567 0.90055 0.86493 0.93180 0.90633 0.99741 0.98665 0.93023 0.93593 0.91793 0.77225 0.89542 0.88642 0.85912 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 14.32 67.78 0.97 -5.28 16 2 C -0.18 -6.14 7.40 25.64 0.19 -5.95 16 3 C 0.10 3.77 5.49 85.56 0.47 4.24 16 4 N -0.53 -22.50 3.73 -909.93 -3.39 -25.89 16 5 C 0.21 11.25 4.58 85.56 0.39 11.64 16 6 C -0.51 -29.27 8.53 25.60 0.22 -29.05 16 7 H 0.05 2.89 7.65 -2.91 -0.02 2.86 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 10 Si 0.95 45.77 29.54 68.60 2.03 47.80 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 14 C 0.13 4.54 4.24 85.56 0.36 4.90 16 15 C -0.21 -6.17 4.67 -20.14 -0.09 -6.26 16 16 C 0.07 1.65 10.58 83.54 0.88 2.53 16 17 N -0.36 -8.00 4.01 -369.59 -1.48 -9.48 16 18 C 0.09 0.99 11.47 127.77 1.47 2.45 16 19 N -0.29 -8.72 12.51 -47.38 -0.59 -9.31 16 20 C 0.00 -0.04 6.84 43.10 0.29 0.25 16 21 C 0.35 10.81 5.79 71.24 0.41 11.23 16 22 F -0.21 -7.10 17.27 44.97 0.78 -6.32 16 23 F -0.18 -7.36 14.86 44.97 0.67 -6.70 16 24 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 25 H 0.08 2.98 7.84 -2.91 -0.02 2.96 16 26 H 0.12 3.41 6.82 -2.91 -0.02 3.39 16 27 H 0.05 2.19 7.05 -2.39 -0.02 2.18 16 28 H 0.08 2.57 6.51 -2.39 -0.02 2.55 16 29 H -0.02 -0.84 6.69 -2.38 -0.02 -0.86 16 30 H 0.00 -0.27 7.81 -2.39 -0.02 -0.29 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.05 1.45 6.37 -2.38 -0.02 1.43 16 33 H 0.06 2.33 7.51 -2.39 -0.02 2.31 16 34 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -73.87 327.14 5.38 -68.50 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.06 Total: 5.76 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 6.03 Total: -8.38 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -5.18 Total: -100.66 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 1.44 Total: -13.02 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.87 5.38 -68.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292042795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.142 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds