Wall clock time and date at job start Tue Mar 31 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99842 * 2 1 4 4 N 1.46901 * 109.46903 * 124.11915 * 3 2 1 5 5 C 1.46901 * 110.99789 * 62.81940 * 4 3 2 6 6 C 1.50691 * 109.47183 * 66.04873 * 5 4 3 7 7 H 1.07998 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00329 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99539 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00359 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46988 * 60.00217 * 10 8 6 12 12 H 1.48498 * 109.47191 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47309 * 300.00323 * 10 8 6 14 14 C 1.46902 * 111.00251 * 298.86699 * 4 3 2 15 15 C 1.50699 * 109.47161 * 288.43262 * 14 4 3 16 16 C 1.39868 * 126.03956 * 274.85798 * 15 14 4 17 17 N 1.30837 * 108.20700 * 179.81420 * 16 15 14 18 18 N 1.40088 * 108.19901 * 0.43876 * 17 16 15 19 19 C 1.46504 * 126.03341 * 179.69882 * 18 17 16 20 20 C 1.53003 * 109.47058 * 305.02171 * 19 18 17 21 21 F 1.39898 * 109.47016 * 175.00378 * 20 19 18 22 22 F 1.39898 * 109.46988 * 295.00121 * 20 19 18 23 23 C 1.34942 * 107.92728 * 359.71544 * 18 17 16 24 24 H 1.08000 * 119.99907 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00397 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99754 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47465 * 4.12314 * 3 2 1 28 28 H 1.08999 * 109.47170 * 244.11941 * 3 2 1 29 29 H 1.09001 * 109.47338 * 306.04154 * 5 4 3 30 30 H 1.09004 * 109.46854 * 186.04630 * 5 4 3 31 31 H 0.96998 * 119.99913 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.47188 * 48.42520 * 14 4 3 33 33 H 1.08995 * 109.47456 * 168.43137 * 14 4 3 34 34 H 1.08010 * 125.89697 * 359.97438 * 16 15 14 35 35 H 1.08997 * 109.47449 * 65.01941 * 19 18 17 36 36 H 1.08998 * 109.46913 * 185.02440 * 19 18 17 37 37 H 1.09000 * 109.46918 * 55.00150 * 20 19 18 38 38 H 1.08007 * 126.12666 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9811 1.3407 1.1466 5 6 3.9907 0.2784 1.0460 6 6 4.8849 0.5456 -0.1371 7 1 4.7195 1.4172 -0.7530 8 6 5.9143 -0.3225 -0.4334 9 7 6.1160 -1.3836 0.3170 10 14 7.0223 0.0084 -1.9004 11 1 7.6978 1.3191 -1.7248 12 1 8.0437 -1.0648 -2.0013 13 1 6.2065 0.0343 -3.1410 14 6 2.2440 1.2481 2.4139 15 6 1.5035 2.5374 2.6598 16 6 2.0281 3.6856 3.2621 17 7 1.0882 4.5952 3.2959 18 7 -0.0688 4.0503 2.7243 19 6 -1.3566 4.7315 2.5694 20 6 -1.8259 5.2506 3.9300 21 9 -2.9967 5.9984 3.7653 22 9 -2.0794 4.1685 4.7798 23 6 0.2121 2.7870 2.3420 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1323 0.0739 28 1 2.6336 1.3955 -0.9246 29 1 3.4945 -0.6834 0.9166 30 1 4.5894 0.2587 1.9568 31 1 6.8404 -1.9942 0.1088 32 1 1.5317 0.4247 2.3607 33 1 2.9446 1.0703 3.2297 34 1 3.0359 3.8023 3.6328 35 1 -1.2443 5.5685 1.8803 36 1 -2.0926 4.0315 2.1741 37 1 -1.0504 5.8807 4.3656 38 1 -0.4713 2.0985 1.8672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294045608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:58 Heat of formation + Delta-G solvation = 4.816552 kcal Electronic energy + Delta-G solvation = -22283.703685 eV Core-core repulsion = 18606.587338 eV Total energy + Delta-G solvation = -3677.116348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.34185 -47.34553 -41.14114 -37.37169 -34.17589 -32.95058 -32.18332 -30.49361 -29.26193 -26.88015 -25.97368 -23.99906 -23.40738 -21.23228 -20.87198 -20.04702 -18.90082 -18.03933 -17.75997 -16.95882 -16.32888 -16.04548 -15.21654 -14.90172 -14.71538 -14.27867 -14.26210 -14.07217 -13.74420 -13.70828 -13.49731 -13.13371 -12.82903 -12.62450 -12.44659 -12.02762 -11.54302 -11.29796 -11.13482 -10.97659 -10.83416 -10.65811 -10.49537 -10.36521 -9.86487 -9.37134 -9.31567 -8.90850 -8.44763 -8.26025 -7.19428 -6.02367 -4.03286 1.86921 2.25115 2.68892 2.99780 3.25802 3.33612 3.37936 3.40978 3.85060 4.05163 4.34606 4.43805 4.67062 4.83490 4.97496 5.12555 5.26906 5.34167 5.44070 5.54688 5.62946 5.72643 6.00172 6.06793 6.26787 6.37078 6.43278 6.64078 6.76112 6.97057 7.04214 7.09172 7.35624 7.37944 7.73724 7.81205 8.10213 8.20870 8.55873 9.04004 9.60780 11.08229 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.003437 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.608942 B = 8143.920312 C = 8430.073348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.153 4.153 3 C 0.088 3.912 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.123 3.877 15 C -0.198 4.198 16 C 0.080 3.920 17 N -0.310 5.310 18 N -0.388 5.388 19 C 0.096 3.904 20 C 0.253 3.747 21 F -0.200 7.200 22 F -0.199 7.199 23 C 0.058 3.942 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.089 0.911 29 H -0.003 1.003 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.186 0.814 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 9.777 4.985 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.173 4.173 3 C -0.040 4.040 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.006 4.006 15 C -0.209 4.209 16 C -0.107 4.107 17 N -0.130 5.130 18 N -0.172 5.172 19 C -0.028 4.028 20 C 0.199 3.801 21 F -0.181 7.181 22 F -0.180 7.180 23 C -0.086 4.086 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.203 0.797 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.883 11.317 5.344 20.222 hybrid contribution 0.267 -1.654 -1.075 1.991 sum -15.617 9.663 4.270 18.854 Atomic orbital electron populations 1.23626 0.95960 1.00504 1.05771 1.23973 0.96182 1.01769 0.95346 1.21261 0.94130 0.92075 0.96581 1.62374 1.12947 1.50135 0.99160 1.19783 0.88735 0.87150 0.97840 1.21110 1.13022 1.08666 1.11609 0.92017 1.24962 0.97568 0.95121 0.96861 1.69943 1.31681 1.13339 1.38911 0.86596 0.80307 0.77825 0.82895 1.20185 1.21427 1.20351 1.20360 0.95472 0.90687 0.94093 1.20194 0.93399 0.99023 1.08307 1.23855 0.98612 0.90682 0.97506 1.77246 0.92219 1.22663 1.20904 1.48038 1.08948 1.10681 1.49542 1.22491 0.83172 1.00831 0.96340 1.22180 0.84850 0.82479 0.90629 1.93004 1.52138 1.76834 1.96136 1.93022 1.95055 1.57145 1.72792 1.22344 0.98038 0.86869 1.01367 0.89626 0.89440 0.86928 0.92505 0.89309 0.98533 0.95203 0.92910 0.94670 0.90571 0.79680 0.86894 0.86639 0.85896 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.06 14.21 29.01 0.41 -2.65 16 2 C -0.15 -2.61 7.46 -36.03 -0.27 -2.87 16 3 C 0.09 1.61 5.47 -4.98 -0.03 1.58 16 4 N -0.52 -10.59 4.65 -238.96 -1.11 -11.70 16 5 C 0.19 4.67 4.55 -4.98 -0.02 4.65 16 6 C -0.51 -13.68 8.48 -34.44 -0.29 -13.97 16 7 H 0.06 1.66 7.12 -52.49 -0.37 1.29 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 10 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.12 2.10 5.32 -4.98 -0.03 2.07 16 15 C -0.20 -2.97 5.02 -105.05 -0.53 -3.50 16 16 C 0.08 1.17 11.96 -17.37 -0.21 0.97 16 17 N -0.31 -4.36 12.34 30.63 0.38 -3.99 16 18 N -0.39 -4.70 3.66 -61.36 -0.22 -4.92 16 19 C 0.10 0.78 6.70 -4.04 -0.03 0.75 16 20 C 0.25 2.21 5.43 37.16 0.20 2.41 16 21 F -0.20 -1.80 17.34 2.25 0.04 -1.76 16 22 F -0.20 -2.26 17.32 2.25 0.04 -2.22 16 23 C 0.06 0.75 10.45 -17.23 -0.18 0.57 16 24 H 0.09 1.03 7.11 -52.49 -0.37 0.66 16 25 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 26 H 0.11 2.18 6.76 -52.49 -0.35 1.83 16 27 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 28 H 0.09 1.82 6.78 -51.93 -0.35 1.47 16 29 H 0.00 -0.08 6.28 -51.93 -0.33 -0.41 16 30 H 0.03 0.79 7.87 -51.93 -0.41 0.38 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 0.59 6.77 -51.93 -0.35 0.24 16 33 H 0.08 1.31 7.82 -51.93 -0.41 0.91 16 34 H 0.19 2.41 8.06 -52.48 -0.42 1.99 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.12 1.01 8.05 -51.93 -0.42 0.59 16 38 H 0.17 1.84 7.22 -52.48 -0.38 1.46 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -30.48 328.74 -6.17 -36.65 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.90 Total: 0.57 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.06 Total: -8.52 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.22 Total: -45.95 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.48 -6.17 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294045608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds