Wall clock time and date at job start Tue Mar 31 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99842 * 2 1 4 4 N 1.46901 * 109.46903 * 124.11915 * 3 2 1 5 5 C 1.46901 * 110.99789 * 62.81940 * 4 3 2 6 6 C 1.50691 * 109.47183 * 66.04873 * 5 4 3 7 7 H 1.07998 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00329 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99539 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00359 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46988 * 60.00217 * 10 8 6 12 12 H 1.48498 * 109.47191 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47309 * 300.00323 * 10 8 6 14 14 C 1.46902 * 111.00251 * 298.86699 * 4 3 2 15 15 C 1.50699 * 109.47161 * 288.43262 * 14 4 3 16 16 C 1.39868 * 126.03956 * 274.85798 * 15 14 4 17 17 N 1.30837 * 108.20700 * 179.81420 * 16 15 14 18 18 N 1.40088 * 108.19901 * 0.43876 * 17 16 15 19 19 C 1.46504 * 126.03341 * 179.69882 * 18 17 16 20 20 C 1.53003 * 109.47058 * 305.02171 * 19 18 17 21 21 F 1.39898 * 109.47016 * 175.00378 * 20 19 18 22 22 F 1.39898 * 109.46988 * 295.00121 * 20 19 18 23 23 C 1.34942 * 107.92728 * 359.71544 * 18 17 16 24 24 H 1.08000 * 119.99907 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00397 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99754 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47465 * 4.12314 * 3 2 1 28 28 H 1.08999 * 109.47170 * 244.11941 * 3 2 1 29 29 H 1.09001 * 109.47338 * 306.04154 * 5 4 3 30 30 H 1.09004 * 109.46854 * 186.04630 * 5 4 3 31 31 H 0.96998 * 119.99913 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.47188 * 48.42520 * 14 4 3 33 33 H 1.08995 * 109.47456 * 168.43137 * 14 4 3 34 34 H 1.08010 * 125.89697 * 359.97438 * 16 15 14 35 35 H 1.08997 * 109.47449 * 65.01941 * 19 18 17 36 36 H 1.08998 * 109.46913 * 185.02440 * 19 18 17 37 37 H 1.09000 * 109.46918 * 55.00150 * 20 19 18 38 38 H 1.08007 * 126.12666 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9811 1.3407 1.1466 5 6 3.9907 0.2784 1.0460 6 6 4.8849 0.5456 -0.1371 7 1 4.7195 1.4172 -0.7530 8 6 5.9143 -0.3225 -0.4334 9 7 6.1160 -1.3836 0.3170 10 14 7.0223 0.0084 -1.9004 11 1 7.6978 1.3191 -1.7248 12 1 8.0437 -1.0648 -2.0013 13 1 6.2065 0.0343 -3.1410 14 6 2.2440 1.2481 2.4139 15 6 1.5035 2.5374 2.6598 16 6 2.0281 3.6856 3.2621 17 7 1.0882 4.5952 3.2959 18 7 -0.0688 4.0503 2.7243 19 6 -1.3566 4.7315 2.5694 20 6 -1.8259 5.2506 3.9300 21 9 -2.9967 5.9984 3.7653 22 9 -2.0794 4.1685 4.7798 23 6 0.2121 2.7870 2.3420 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1323 0.0739 28 1 2.6336 1.3955 -0.9246 29 1 3.4945 -0.6834 0.9166 30 1 4.5894 0.2587 1.9568 31 1 6.8404 -1.9942 0.1088 32 1 1.5317 0.4247 2.3607 33 1 2.9446 1.0703 3.2297 34 1 3.0359 3.8023 3.6328 35 1 -1.2443 5.5685 1.8803 36 1 -2.0926 4.0315 2.1741 37 1 -1.0504 5.8807 4.3656 38 1 -0.4713 2.0985 1.8672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294045608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:57 Heat of formation + Delta-G solvation = -14.295700 kcal Electronic energy + Delta-G solvation = -22284.532455 eV Core-core repulsion = 18606.587338 eV Total energy + Delta-G solvation = -3677.945117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.07133 -48.08900 -42.17946 -38.88508 -35.10996 -34.82904 -33.61932 -31.76438 -30.27583 -28.67510 -27.27288 -25.30459 -24.61544 -22.77661 -21.84799 -21.18344 -20.25960 -18.81836 -18.52424 -18.32271 -17.75329 -16.99029 -16.76810 -16.52889 -15.84265 -15.69927 -15.45697 -15.02729 -14.86273 -14.68159 -14.45374 -14.38917 -14.03469 -13.69897 -13.67902 -13.35028 -13.15873 -12.80785 -12.53842 -12.39957 -12.37030 -12.19133 -12.12910 -11.69705 -11.54066 -11.24713 -10.56691 -10.36756 -10.20595 -9.38487 -8.81723 -8.14457 -6.23162 0.86182 1.38874 1.42946 1.45412 1.45913 1.53047 1.85722 2.44324 2.56462 3.18041 3.19950 3.43896 3.59903 3.68898 3.88958 3.95800 4.19285 4.28443 4.30309 4.34006 4.36882 4.61804 4.70040 4.87650 4.94050 5.02320 5.13308 5.22694 5.36371 5.43090 5.66848 5.70047 5.79655 5.89763 6.01613 6.15875 6.46041 6.68523 6.77176 6.93619 7.45816 8.95615 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.003437 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.608942 B = 8143.920312 C = 8430.073348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.190 4.190 3 C 0.097 3.903 4 N -0.532 5.532 5 C 0.207 3.793 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.132 3.868 15 C -0.223 4.223 16 C 0.066 3.934 17 N -0.321 5.321 18 N -0.381 5.381 19 C 0.090 3.910 20 C 0.256 3.744 21 F -0.200 7.200 22 F -0.215 7.215 23 C 0.073 3.927 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.059 0.941 29 H -0.025 1.025 30 H 0.000 1.000 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 11.077 3.952 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.210 4.210 3 C -0.031 4.031 4 N -0.255 5.255 5 C 0.081 3.919 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.194 1.194 14 C 0.003 3.997 15 C -0.235 4.235 16 C -0.120 4.120 17 N -0.142 5.142 18 N -0.164 5.164 19 C -0.032 4.032 20 C 0.201 3.799 21 F -0.181 7.181 22 F -0.196 7.196 23 C -0.072 4.072 24 H 0.135 0.865 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.077 0.923 29 H -0.007 1.007 30 H 0.018 0.982 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.205 0.795 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.224 12.653 4.317 22.602 hybrid contribution 0.804 -2.010 -0.713 2.279 sum -17.420 10.643 3.604 20.730 Atomic orbital electron populations 1.23920 0.94466 1.02721 1.00141 1.23571 0.97322 0.99565 1.00561 1.21128 0.93832 0.93751 0.94383 1.62270 1.13800 1.47978 1.01404 1.19380 0.89317 0.87653 0.95590 1.21429 1.13461 1.08426 1.12186 0.92276 1.25818 0.99106 0.94872 0.99665 1.70072 1.32432 1.14329 1.40698 0.85545 0.78359 0.77789 0.79580 1.19536 1.21051 1.19400 1.20209 0.95096 0.92385 0.91982 1.19977 0.94559 0.98252 1.10691 1.23979 0.99190 0.90880 0.97976 1.77208 0.92839 1.22779 1.21410 1.48300 1.09536 1.10490 1.48084 1.22866 0.81796 1.02248 0.96328 1.22234 0.84803 0.82076 0.90765 1.93006 1.52197 1.76781 1.96125 1.92995 1.95168 1.57992 1.73485 1.22625 0.97412 0.87280 0.99918 0.86511 0.87780 0.90444 0.90009 0.92276 1.00722 0.98183 0.92870 0.94307 0.91956 0.79482 0.84655 0.83825 0.85584 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 14.21 67.78 0.96 -3.27 16 2 C -0.19 -6.38 7.46 25.64 0.19 -6.19 16 3 C 0.10 3.53 5.47 85.56 0.47 4.00 16 4 N -0.53 -22.06 4.65 -909.94 -4.23 -26.29 16 5 C 0.21 10.73 4.55 85.55 0.39 11.11 16 6 C -0.52 -28.90 8.48 25.60 0.22 -28.69 16 7 H 0.06 3.27 7.12 -2.91 -0.02 3.25 16 8 C 0.00 0.18 5.46 84.65 0.46 0.64 16 9 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 10 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.13 4.56 5.32 85.56 0.45 5.02 16 15 C -0.22 -6.44 5.02 -20.14 -0.10 -6.54 16 16 C 0.07 1.89 11.96 85.24 1.02 2.91 16 17 N -0.32 -8.50 12.34 -57.02 -0.70 -9.20 16 18 N -0.38 -8.02 3.66 -348.05 -1.27 -9.29 16 19 C 0.09 1.11 6.70 86.38 0.58 1.69 16 20 C 0.26 3.77 5.43 71.98 0.39 4.16 16 21 F -0.20 -3.06 17.34 44.97 0.78 -2.28 16 22 F -0.21 -4.41 17.32 44.97 0.78 -3.63 16 23 C 0.07 1.66 10.45 83.54 0.87 2.53 16 24 H 0.12 2.14 7.11 -2.91 -0.02 2.12 16 25 H 0.10 2.24 8.06 -2.91 -0.02 2.21 16 26 H 0.08 3.15 6.76 -2.91 -0.02 3.13 16 27 H 0.08 2.53 6.38 -2.38 -0.02 2.52 16 28 H 0.06 2.47 6.78 -2.39 -0.02 2.45 16 29 H -0.02 -1.38 6.28 -2.39 -0.01 -1.39 16 30 H 0.00 0.00 7.87 -2.39 -0.02 -0.01 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.04 1.30 6.77 -2.38 -0.02 1.28 16 33 H 0.06 2.27 7.82 -2.39 -0.02 2.25 16 34 H 0.19 4.99 8.06 -2.91 -0.02 4.97 16 35 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.14 1.03 8.07 -2.39 -0.02 1.01 16 37 H 0.13 1.79 8.05 -2.39 -0.02 1.77 16 38 H 0.20 3.26 7.22 -2.91 -0.02 3.24 16 Total: -1.00 -68.01 328.74 4.63 -63.38 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.06 Total: 9.31 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.91 Total: -12.63 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -5.93 Total: -100.45 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 1.56 Total: -5.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.01 4.63 -63.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294045608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.082 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds