Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48506 * 109.46856 * 270.00289 * 3 2 1 5 5 H 1.48502 * 109.47052 * 29.99788 * 3 2 1 6 6 H 1.48499 * 109.47297 * 149.99952 * 3 2 1 7 7 C 1.39042 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00442 * 186.13480 * 7 2 1 9 9 N 1.36878 * 120.00081 * 6.12962 * 7 2 1 10 10 C 1.34771 * 119.99991 * 48.28115 * 9 7 2 11 11 O 1.21585 * 120.00271 * 355.51087 * 10 9 7 12 12 C 1.47732 * 120.00188 * 175.77873 * 10 9 7 13 13 C 1.39398 * 119.88480 * 308.51296 * 12 10 9 14 14 C 1.37924 * 119.60012 * 179.74815 * 13 12 10 15 15 C 1.38107 * 119.93797 * 0.69318 * 14 13 12 16 16 C 1.39038 * 120.86555 * 359.69404 * 15 14 13 17 17 C 1.37402 * 119.77833 * 359.73855 * 16 15 14 18 18 C 1.50607 * 122.63653 * 180.80595 * 17 16 15 19 19 C 1.52736 * 110.60980 * 342.03727 * 18 17 16 20 20 C 1.53324 * 108.38781 * 51.02777 * 19 18 17 21 21 C 1.50660 * 117.69039 * 179.42045 * 16 15 14 22 22 C 1.46508 * 119.99785 * 228.28848 * 9 7 2 23 23 C 1.52987 * 117.50021 * 3.42475 * 22 9 7 24 24 C 1.52989 * 60.00221 * 252.51354 * 23 22 9 25 25 H 0.96997 * 120.00212 * 4.99895 * 1 2 3 26 26 H 1.07998 * 120.20359 * 0.02562 * 13 12 10 27 27 H 1.08003 * 120.03277 * 180.41601 * 14 13 12 28 28 H 1.07992 * 119.56694 * 179.71133 * 15 14 13 29 29 H 1.08997 * 109.25185 * 102.32805 * 18 17 16 30 30 H 1.09001 * 109.24905 * 221.74897 * 18 17 16 31 31 H 1.08992 * 109.68192 * 291.30106 * 19 18 17 32 32 H 1.09001 * 109.67937 * 170.75052 * 19 18 17 33 33 H 1.08996 * 109.68406 * 170.54622 * 20 19 18 34 34 H 1.09004 * 109.68255 * 49.98954 * 20 19 18 35 35 H 1.09001 * 109.25577 * 282.47478 * 21 16 15 36 36 H 1.08998 * 109.25151 * 41.90560 * 21 16 15 37 37 H 1.08999 * 115.54445 * 149.13399 * 22 9 7 38 38 H 1.08998 * 117.50142 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49948 * 145.02356 * 23 22 9 40 40 H 1.09007 * 117.50335 * 252.51142 * 24 23 22 41 41 H 1.09004 * 117.52265 * 107.47946 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4951 2.0464 -1.4002 5 1 1.4450 2.6527 0.7000 6 1 3.5452 1.4403 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0843 -1.2069 0.0994 9 7 1.3305 -2.3861 -0.1276 10 6 0.4063 -2.5316 -1.0977 11 8 0.1164 -1.5882 -1.8077 12 6 -0.2589 -3.8360 -1.2946 13 6 0.5069 -4.9931 -1.4276 14 6 -0.1204 -6.2085 -1.6059 15 6 -1.4988 -6.2704 -1.6660 16 6 -2.2705 -5.1205 -1.5424 17 6 -1.6585 -3.9050 -1.3527 18 6 -2.4317 -2.6224 -1.1933 19 6 -3.8615 -2.7896 -1.7036 20 6 -4.4644 -4.0399 -1.0522 21 6 -3.7671 -5.2688 -1.6320 22 6 1.6089 -3.4929 0.7910 23 6 2.6098 -3.2393 1.9199 24 6 3.0014 -4.1242 0.7349 25 1 -0.4850 0.8368 -0.0732 26 1 1.5847 -4.9390 -1.3867 27 1 0.4659 -7.1103 -1.7030 28 1 -1.9835 -7.2245 -1.8104 29 1 -2.4563 -2.3463 -0.1392 30 1 -1.9382 -1.8326 -1.7596 31 1 -3.8532 -2.9080 -2.7870 32 1 -4.4522 -1.9141 -1.4340 33 1 -5.5318 -4.0876 -1.2676 34 1 -4.3082 -4.0037 0.0260 35 1 -4.0549 -5.3857 -2.6768 36 1 -4.0747 -6.1532 -1.0740 37 1 0.7661 -4.1508 1.0034 38 1 3.0615 -2.2491 1.9790 39 1 2.4257 -3.7303 2.8755 40 1 3.0749 -5.1975 0.9107 41 1 3.7102 -3.7163 0.0143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294438745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 18.707539 kcal Electronic energy + Delta-G solvation = -23290.653376 eV Core-core repulsion = 20136.076165 eV Total energy + Delta-G solvation = -3154.577211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.86846 -38.10350 -35.97965 -35.56488 -32.87811 -31.82941 -30.81800 -29.80866 -28.46813 -25.15804 -23.38592 -22.50782 -22.25680 -21.64038 -20.94396 -19.28024 -18.92092 -16.71812 -16.07450 -15.51648 -15.16076 -14.85296 -14.61118 -14.27223 -13.79120 -13.51860 -13.49932 -13.24566 -12.82975 -12.66134 -12.19621 -12.04023 -11.93826 -11.51245 -11.28764 -11.11983 -10.97556 -10.93174 -10.81866 -10.59232 -10.50425 -10.18123 -10.11633 -9.93621 -9.81300 -9.66644 -8.72264 -8.18972 -8.01400 -7.86590 -6.99359 -6.00423 -3.92590 1.68187 1.87129 3.31116 3.36348 3.37802 3.97175 4.24118 4.41684 4.80997 4.91702 4.96890 5.10400 5.21432 5.26239 5.40081 5.47923 5.54783 5.63286 5.64768 5.73873 5.76891 5.84624 5.89724 5.95654 6.06139 6.16503 6.18716 6.23674 6.34589 6.39207 6.42325 6.51603 6.58644 6.76484 6.78658 6.88465 6.93609 6.95409 7.02765 7.31491 7.50913 7.63349 8.31729 9.09321 9.16766 9.65455 10.32005 11.01052 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.006926 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.288444 B = 4041.781183 C = 5217.025421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.077 0.923 9 N -0.422 5.422 10 C 0.520 3.480 11 O -0.511 6.511 12 C -0.099 4.099 13 C -0.097 4.097 14 C -0.135 4.135 15 C -0.122 4.122 16 C -0.095 4.095 17 C -0.031 4.031 18 C -0.093 4.093 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.073 4.073 22 C 0.081 3.919 23 C -0.175 4.175 24 C -0.210 4.210 25 H 0.262 0.738 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -10.972 0.041 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.142 5.142 10 C 0.307 3.693 11 O -0.388 6.388 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.095 4.095 17 C -0.031 4.031 18 C -0.130 4.130 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.110 4.110 22 C -0.025 4.025 23 C -0.212 4.212 24 C -0.249 4.249 25 H 0.073 0.927 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.721 -10.312 -0.268 11.345 hybrid contribution 0.540 0.599 0.120 0.815 sum -4.181 -9.713 -0.148 10.576 Atomic orbital electron populations 1.69863 1.06114 1.27163 1.42429 1.25347 0.95036 0.99089 0.95189 0.86233 0.79291 0.82559 0.78217 1.20518 1.21198 1.19826 1.18874 0.90681 0.82292 1.55040 0.90552 1.42611 1.36604 1.10580 1.24382 1.17845 0.82965 0.86129 0.82360 1.90588 1.62547 1.39570 1.46078 1.20628 0.93493 0.95306 1.00803 1.21272 0.99914 0.91580 0.98759 1.20867 0.94470 0.97379 1.02637 1.21079 0.93893 0.97369 1.01695 1.19484 0.95241 0.92524 1.02223 1.19720 0.92485 0.94556 0.96384 1.20683 0.93641 0.95610 1.03019 1.21547 0.96579 0.97227 1.00028 1.21562 0.98667 0.94985 1.00529 1.20392 0.91185 0.98405 1.01029 1.21674 0.91327 0.93642 0.95847 1.23081 1.04329 1.01590 0.92241 1.23330 1.01363 0.97693 1.02509 0.92727 0.85787 0.86531 0.86907 0.90670 0.87107 0.92212 0.91869 0.92114 0.91784 0.91218 0.91432 0.88060 0.87502 0.89879 0.89812 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.72 11.08 55.50 0.62 -23.11 16 2 C 0.06 1.77 4.77 -17.45 -0.08 1.69 16 3 Si 0.91 21.47 29.56 -169.99 -5.03 16.45 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.34 -9.23 7.80 -15.00 -0.12 -9.35 16 8 H 0.08 2.01 7.40 -52.48 -0.39 1.62 16 9 N -0.42 -10.59 2.83 -108.84 -0.31 -10.90 16 10 C 0.52 13.37 5.90 -12.38 -0.07 13.29 16 11 O -0.51 -14.96 12.24 5.29 0.06 -14.90 16 12 C -0.10 -2.12 4.77 -104.83 -0.50 -2.62 16 13 C -0.10 -1.76 8.09 -39.26 -0.32 -2.08 16 14 C -0.14 -2.06 10.03 -39.74 -0.40 -2.46 16 15 C -0.12 -1.80 9.60 -39.33 -0.38 -2.18 16 16 C -0.09 -1.55 5.73 -104.65 -0.60 -2.15 16 17 C -0.03 -0.60 5.77 -104.22 -0.60 -1.20 16 18 C -0.09 -1.88 5.03 -28.06 -0.14 -2.02 16 19 C -0.12 -1.83 5.98 -26.70 -0.16 -1.99 16 20 C -0.12 -1.60 5.98 -26.70 -0.16 -1.75 16 21 C -0.07 -0.96 5.67 -28.04 -0.16 -1.12 16 22 C 0.08 1.67 4.61 -67.94 -0.31 1.36 16 23 C -0.17 -3.21 9.81 -26.74 -0.26 -3.48 16 24 C -0.21 -3.63 9.62 -26.74 -0.26 -3.88 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.12 2.20 6.85 -52.49 -0.36 1.84 16 27 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 28 H 0.11 1.33 8.05 -52.49 -0.42 0.91 16 29 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.11 2.66 5.78 -51.93 -0.30 2.36 16 31 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.10 2.03 7.03 -51.93 -0.36 1.66 16 38 H 0.11 2.15 6.82 -51.93 -0.35 1.80 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -30.90 325.80 -10.23 -41.13 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.97 Total: 6.34 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -4.52 Total: -19.93 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.31 Total: -34.01 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.06 Total: -14.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.90 -10.23 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294438745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.840 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds