Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48506 * 109.46856 * 270.00289 * 3 2 1 5 5 H 1.48502 * 109.47052 * 29.99788 * 3 2 1 6 6 H 1.48499 * 109.47297 * 149.99952 * 3 2 1 7 7 C 1.39042 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00442 * 186.13480 * 7 2 1 9 9 N 1.36878 * 120.00081 * 6.12962 * 7 2 1 10 10 C 1.34771 * 119.99991 * 48.28115 * 9 7 2 11 11 O 1.21585 * 120.00271 * 355.51087 * 10 9 7 12 12 C 1.47732 * 120.00188 * 175.77873 * 10 9 7 13 13 C 1.39398 * 119.88480 * 308.51296 * 12 10 9 14 14 C 1.37924 * 119.60012 * 179.74815 * 13 12 10 15 15 C 1.38107 * 119.93797 * 0.69318 * 14 13 12 16 16 C 1.39038 * 120.86555 * 359.69404 * 15 14 13 17 17 C 1.37402 * 119.77833 * 359.73855 * 16 15 14 18 18 C 1.50607 * 122.63653 * 180.80595 * 17 16 15 19 19 C 1.52736 * 110.60980 * 342.03727 * 18 17 16 20 20 C 1.53324 * 108.38781 * 51.02777 * 19 18 17 21 21 C 1.50660 * 117.69039 * 179.42045 * 16 15 14 22 22 C 1.46508 * 119.99785 * 228.28848 * 9 7 2 23 23 C 1.52987 * 117.50021 * 3.42475 * 22 9 7 24 24 C 1.52989 * 60.00221 * 252.51354 * 23 22 9 25 25 H 0.96997 * 120.00212 * 4.99895 * 1 2 3 26 26 H 1.07998 * 120.20359 * 0.02562 * 13 12 10 27 27 H 1.08003 * 120.03277 * 180.41601 * 14 13 12 28 28 H 1.07992 * 119.56694 * 179.71133 * 15 14 13 29 29 H 1.08997 * 109.25185 * 102.32805 * 18 17 16 30 30 H 1.09001 * 109.24905 * 221.74897 * 18 17 16 31 31 H 1.08992 * 109.68192 * 291.30106 * 19 18 17 32 32 H 1.09001 * 109.67937 * 170.75052 * 19 18 17 33 33 H 1.08996 * 109.68406 * 170.54622 * 20 19 18 34 34 H 1.09004 * 109.68255 * 49.98954 * 20 19 18 35 35 H 1.09001 * 109.25577 * 282.47478 * 21 16 15 36 36 H 1.08998 * 109.25151 * 41.90560 * 21 16 15 37 37 H 1.08999 * 115.54445 * 149.13399 * 22 9 7 38 38 H 1.08998 * 117.50142 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49948 * 145.02356 * 23 22 9 40 40 H 1.09007 * 117.50335 * 252.51142 * 24 23 22 41 41 H 1.09004 * 117.52265 * 107.47946 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4951 2.0464 -1.4002 5 1 1.4450 2.6527 0.7000 6 1 3.5452 1.4403 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0843 -1.2069 0.0994 9 7 1.3305 -2.3861 -0.1276 10 6 0.4063 -2.5316 -1.0977 11 8 0.1164 -1.5882 -1.8077 12 6 -0.2589 -3.8360 -1.2946 13 6 0.5069 -4.9931 -1.4276 14 6 -0.1204 -6.2085 -1.6059 15 6 -1.4988 -6.2704 -1.6660 16 6 -2.2705 -5.1205 -1.5424 17 6 -1.6585 -3.9050 -1.3527 18 6 -2.4317 -2.6224 -1.1933 19 6 -3.8615 -2.7896 -1.7036 20 6 -4.4644 -4.0399 -1.0522 21 6 -3.7671 -5.2688 -1.6320 22 6 1.6089 -3.4929 0.7910 23 6 2.6098 -3.2393 1.9199 24 6 3.0014 -4.1242 0.7349 25 1 -0.4850 0.8368 -0.0732 26 1 1.5847 -4.9390 -1.3867 27 1 0.4659 -7.1103 -1.7030 28 1 -1.9835 -7.2245 -1.8104 29 1 -2.4563 -2.3463 -0.1392 30 1 -1.9382 -1.8326 -1.7596 31 1 -3.8532 -2.9080 -2.7870 32 1 -4.4522 -1.9141 -1.4340 33 1 -5.5318 -4.0876 -1.2676 34 1 -4.3082 -4.0037 0.0260 35 1 -4.0549 -5.3857 -2.6768 36 1 -4.0747 -6.1532 -1.0740 37 1 0.7661 -4.1508 1.0034 38 1 3.0615 -2.2491 1.9790 39 1 2.4257 -3.7303 2.8755 40 1 3.0749 -5.1975 0.9107 41 1 3.7102 -3.7163 0.0143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294438745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 2.044439 kcal Electronic energy + Delta-G solvation = -23291.375942 eV Core-core repulsion = 20136.076165 eV Total energy + Delta-G solvation = -3155.299777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34602 -39.73432 -37.72082 -36.83531 -34.80731 -33.32764 -32.66911 -31.08898 -29.85636 -27.09357 -24.74094 -24.04208 -23.54053 -23.07112 -22.58883 -21.05406 -20.19160 -18.43650 -17.88241 -16.89404 -16.74934 -16.34137 -16.24962 -15.82666 -15.44753 -15.03307 -14.79802 -14.66025 -14.45970 -14.10791 -13.78113 -13.56627 -13.28036 -12.99948 -12.92697 -12.82953 -12.65768 -12.50564 -12.27531 -12.19771 -12.03260 -11.76669 -11.56119 -11.44101 -11.20143 -11.12030 -10.74880 -9.89091 -9.44935 -9.37762 -8.95861 -8.07398 -6.05245 0.30505 0.54779 1.36232 1.40922 1.47958 2.27711 2.41983 2.88253 3.11201 3.16492 3.38009 3.80675 3.84463 4.01900 4.06238 4.11340 4.18885 4.26959 4.31646 4.34526 4.46692 4.56539 4.59020 4.68574 4.79391 4.85459 4.95367 4.97240 5.06933 5.09502 5.13482 5.17733 5.24888 5.29645 5.42762 5.44895 5.45366 5.49975 5.61829 5.68073 5.88597 6.16960 6.25717 7.05497 7.21656 7.68078 8.38293 8.91711 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.006926 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.288444 B = 4041.781183 C = 5217.025421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.353 4.353 8 H 0.078 0.922 9 N -0.437 5.437 10 C 0.509 3.491 11 O -0.567 6.567 12 C -0.133 4.133 13 C -0.102 4.102 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.093 4.093 17 C -0.059 4.059 18 C -0.083 4.083 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.072 4.072 22 C 0.052 3.948 23 C -0.172 4.172 24 C -0.176 4.176 25 H 0.255 0.745 26 H 0.122 0.878 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 -15.152 0.310 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.481 4.481 8 H 0.096 0.904 9 N -0.157 5.157 10 C 0.298 3.702 11 O -0.448 6.448 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.140 4.140 15 C -0.126 4.126 16 C -0.093 4.093 17 C -0.060 4.060 18 C -0.120 4.120 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.109 4.109 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.214 4.214 25 H 0.064 0.936 26 H 0.140 0.860 27 H 0.176 0.824 28 H 0.178 0.822 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.118 -14.525 0.039 15.401 hybrid contribution 0.707 1.787 0.020 1.922 sum -4.410 -12.738 0.059 13.480 Atomic orbital electron populations 1.70031 1.07589 1.27169 1.44287 1.26224 0.95804 1.02520 0.95167 0.85278 0.78868 0.78563 0.77622 1.21521 1.20855 1.17704 1.19119 0.90961 0.83569 1.54407 0.90444 1.42825 1.36416 1.11255 1.25180 1.18623 0.82644 0.87381 0.81559 1.90529 1.64178 1.42013 1.48054 1.20418 0.94588 0.94211 1.04452 1.21317 0.99743 0.91797 0.99230 1.21309 0.95262 0.97227 1.00201 1.21614 0.93703 0.98453 0.98849 1.19915 0.97577 0.91436 1.00378 1.19790 0.91931 0.95607 0.98697 1.20412 0.96427 0.95128 1.00016 1.21522 0.93749 0.99319 1.00328 1.21548 1.00447 0.93520 0.99639 1.20523 0.88443 0.99192 1.02704 1.21793 0.93150 0.93380 0.96982 1.23148 1.02830 1.01266 0.93659 1.23333 0.97744 0.99609 1.00764 0.93579 0.85981 0.82356 0.82218 0.94195 0.92335 0.91789 0.91725 0.88767 0.92734 0.89293 0.88103 0.87698 0.89795 0.86697 0.85724 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.33 11.08 21.68 0.24 -53.09 16 2 C 0.01 0.55 4.77 84.96 0.41 0.96 16 3 Si 0.97 46.37 29.56 68.60 2.03 48.40 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.35 -20.07 7.80 84.10 0.66 -19.41 16 8 H 0.08 4.24 7.40 -2.91 -0.02 4.22 16 9 N -0.44 -23.15 2.83 -616.52 -1.74 -24.89 16 10 C 0.51 28.07 5.90 86.75 0.51 28.58 16 11 O -0.57 -36.30 12.24 -3.98 -0.05 -36.35 16 12 C -0.13 -5.94 4.77 -20.00 -0.10 -6.04 16 13 C -0.10 -3.62 8.09 22.47 0.18 -3.43 16 14 C -0.12 -3.20 10.03 22.16 0.22 -2.98 16 15 C -0.11 -2.65 9.60 22.43 0.22 -2.44 16 16 C -0.09 -2.79 5.73 -19.88 -0.11 -2.91 16 17 C -0.06 -2.41 5.77 -19.60 -0.11 -2.52 16 18 C -0.08 -3.63 5.03 29.73 0.15 -3.48 16 19 C -0.11 -3.59 5.98 30.62 0.18 -3.41 16 20 C -0.11 -2.77 5.98 30.61 0.18 -2.59 16 21 C -0.07 -1.58 5.67 29.75 0.17 -1.41 16 22 C 0.05 2.17 4.61 44.98 0.21 2.37 16 23 C -0.17 -6.17 9.81 30.59 0.30 -5.87 16 24 C -0.18 -5.77 9.62 30.59 0.29 -5.48 16 25 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.12 4.24 6.85 -2.91 -0.02 4.22 16 27 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.16 2.52 8.05 -2.91 -0.02 2.49 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 3.16 5.78 -2.39 -0.01 3.15 16 31 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.43 8.10 -2.38 -0.02 1.41 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.63 8.12 -2.39 -0.02 1.61 16 37 H 0.11 4.23 7.03 -2.39 -0.02 4.22 16 38 H 0.08 3.42 6.82 -2.39 -0.02 3.40 16 39 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -76.51 325.80 4.85 -71.66 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.02 Total: 24.33 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 3.36 Total: -30.06 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.50 Total: -77.99 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.05 Total: -36.35 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.51 4.85 -71.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294438745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.702 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds