Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48492 * 109.47289 * 240.00484 * 3 2 1 5 5 H 1.48508 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00128 * 3 2 1 7 7 C 1.38950 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 197.99437 * 7 2 1 9 9 N 1.37096 * 120.00373 * 17.99962 * 7 2 1 10 10 C 1.34780 * 119.99784 * 44.47646 * 9 7 2 11 11 O 1.21289 * 120.00091 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99738 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.46703 * 179.97438 * 12 10 9 14 14 C 1.38256 * 120.02836 * 90.00593 * 13 12 10 15 15 C 1.38107 * 119.93195 * 179.97438 * 14 13 12 16 16 C 1.38502 * 120.21291 * 359.96726 * 15 14 13 17 17 C 1.38215 * 119.85044 * 0.03449 * 16 15 14 18 18 C 1.38098 * 120.03259 * 269.99268 * 13 12 10 19 19 C 1.51377 * 109.75188 * 179.97438 * 17 16 15 20 20 C 1.54341 * 105.17367 * 342.82039 * 19 17 16 21 21 C 1.51675 * 130.30672 * 179.83332 * 16 15 14 22 22 C 1.46493 * 119.99993 * 224.47830 * 9 7 2 23 23 C 1.52998 * 117.50321 * 3.20167 * 22 9 7 24 24 C 1.53008 * 117.49715 * 294.54149 * 22 9 7 25 25 H 0.96992 * 119.99964 * 354.95160 * 1 2 3 26 26 H 1.08996 * 109.47057 * 60.00003 * 12 10 9 27 27 H 1.08997 * 109.46901 * 299.99998 * 12 10 9 28 28 H 1.08001 * 120.03589 * 359.97438 * 14 13 12 29 29 H 1.07992 * 119.89237 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.89511 * 0.03697 * 18 13 12 31 31 H 1.09005 * 110.30128 * 223.89442 * 19 17 16 32 32 H 1.09007 * 110.38343 * 101.79311 * 19 17 16 33 33 H 1.08998 * 110.82232 * 144.56444 * 20 19 17 34 34 H 1.09000 * 110.82260 * 267.91918 * 20 19 17 35 35 H 1.09006 * 110.25435 * 78.28883 * 21 16 15 36 36 H 1.09005 * 110.49247 * 316.04423 * 21 16 15 37 37 H 1.08999 * 115.55358 * 148.87826 * 22 9 7 38 38 H 1.09006 * 117.49333 * 0.02562 * 23 22 9 39 39 H 1.08996 * 117.50218 * 145.02272 * 23 22 9 40 40 H 1.08998 * 117.49705 * 214.97766 * 24 22 9 41 41 H 1.08991 * 117.49687 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0493 -1.2263 0.2884 9 7 1.3738 -2.3615 -0.3679 10 6 0.5768 -2.3773 -1.4547 11 8 0.4219 -1.3672 -2.1080 12 6 -0.1218 -3.6503 -1.8582 13 6 -0.9450 -3.4008 -3.0957 14 6 -0.3862 -3.5840 -4.3469 15 6 -1.1426 -3.3553 -5.4796 16 6 -2.4601 -2.9435 -5.3664 17 6 -3.0186 -2.7604 -4.1155 18 6 -2.2582 -2.9894 -2.9808 19 6 -4.4574 -2.3120 -4.2583 20 6 -4.5848 -1.8212 -5.7160 21 6 -3.4848 -2.6272 -6.4391 22 6 1.5614 -3.5816 0.4208 23 6 2.4175 -3.4812 1.6848 24 6 2.9616 -4.1979 0.4465 25 1 -0.4850 0.8367 0.0739 26 1 -0.7735 -3.9793 -1.0489 27 1 0.6198 -4.4221 -2.0642 28 1 0.6408 -3.9055 -4.4386 29 1 -0.7053 -3.4982 -6.4567 30 1 -2.6939 -2.8462 -2.0030 31 1 -4.6704 -1.4980 -3.5652 32 1 -5.1349 -3.1470 -4.0796 33 1 -5.5686 -2.0595 -6.1204 34 1 -4.3889 -0.7511 -5.7832 35 1 -3.8982 -3.5486 -6.8494 36 1 -3.0357 -2.0277 -7.2309 37 1 0.7111 -4.2633 0.4417 38 1 2.8408 -2.5071 1.9298 39 1 2.1306 -4.0970 2.5372 40 1 3.0324 -5.2849 0.4848 41 1 3.7430 -3.6957 -0.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299296333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = 20.637014 kcal Electronic energy + Delta-G solvation = -22322.886735 eV Core-core repulsion = 19168.393192 eV Total energy + Delta-G solvation = -3154.493542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80427 -38.46342 -36.29573 -35.31327 -32.77568 -31.55601 -30.86402 -29.93521 -27.55540 -26.28408 -24.37756 -22.19983 -21.69869 -21.16659 -20.57998 -20.18042 -18.82927 -16.35085 -16.01808 -15.78035 -15.54765 -14.85342 -14.74136 -14.44153 -14.05398 -13.76943 -13.29910 -12.86146 -12.76408 -12.71407 -12.56304 -12.16728 -11.75213 -11.48880 -11.28850 -11.07541 -11.07279 -10.89107 -10.81100 -10.71868 -10.61531 -10.48688 -10.28191 -10.15082 -9.93217 -9.70838 -8.67175 -8.28680 -8.08613 -7.78187 -6.96724 -6.06588 -3.82019 1.80861 1.88279 3.32397 3.39711 3.43224 4.11078 4.19735 4.33968 4.63994 4.75558 4.81163 4.93935 5.07506 5.28217 5.34438 5.35143 5.44127 5.56218 5.61609 5.73535 5.77398 5.79573 5.81747 5.89263 5.92210 5.97932 6.04995 6.14101 6.17303 6.23429 6.24270 6.25260 6.44648 6.55913 6.63488 6.77418 6.86360 6.95628 7.03522 7.17953 7.48511 7.65696 8.32452 9.11782 9.22675 9.71814 10.36593 11.02558 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.005064 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.952232 B = 5527.876395 C = 6448.886298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.075 0.925 9 N -0.431 5.431 10 C 0.488 3.512 11 O -0.523 6.523 12 C -0.100 4.100 13 C -0.039 4.039 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.088 4.088 19 C -0.080 4.080 20 C -0.120 4.120 21 C -0.077 4.077 22 C 0.076 3.924 23 C -0.174 4.174 24 C -0.209 4.209 25 H 0.263 0.737 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -9.016 -6.349 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.475 4.475 8 H 0.093 0.907 9 N -0.153 5.153 10 C 0.275 3.725 11 O -0.399 6.399 12 C -0.141 4.141 13 C -0.039 4.039 14 C -0.126 4.126 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.158 4.158 21 C -0.114 4.114 22 C -0.031 4.031 23 C -0.212 4.212 24 C -0.248 4.248 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.773 -8.328 -6.770 12.187 hybrid contribution 0.512 0.790 0.291 0.986 sum -5.261 -7.538 -6.479 11.246 Atomic orbital electron populations 1.69809 1.06494 1.27383 1.42961 1.25224 0.94805 0.99271 0.94305 0.86295 0.79305 0.82111 0.78408 1.20012 1.21245 1.20419 1.18766 0.94264 0.83877 1.50638 0.90732 1.42765 1.44430 1.06808 1.21283 1.19635 0.82886 0.88543 0.81464 1.90552 1.62020 1.34534 1.52830 1.20730 0.98734 0.99096 0.95519 1.19315 0.93307 0.97133 0.94172 1.20820 0.99092 1.00900 0.91820 1.20441 0.93039 1.01171 0.98108 1.20485 0.94390 1.01436 0.95105 1.20412 0.95751 1.00400 0.93403 1.20423 0.93570 0.99059 0.97553 1.20998 0.93019 1.00610 0.97096 1.22274 0.98371 1.00152 0.94985 1.21025 0.94212 0.99706 0.96441 1.21696 0.92448 0.91702 0.97219 1.23062 1.04611 1.02426 0.91078 1.23324 0.99927 0.98389 1.03139 0.92652 0.89946 0.89846 0.86374 0.86919 0.86603 0.90874 0.90726 0.91016 0.91098 0.90866 0.91206 0.88082 0.87532 0.89872 0.89851 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.96 11.75 55.50 0.65 -24.31 16 2 C 0.07 2.12 4.39 -17.46 -0.08 2.05 16 3 Si 0.91 22.34 29.59 -169.99 -5.03 17.31 16 4 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.35 -9.60 7.91 -14.93 -0.12 -9.72 16 8 H 0.08 1.99 7.27 -52.48 -0.38 1.61 16 9 N -0.43 -10.83 2.83 -107.73 -0.31 -11.14 16 10 C 0.49 12.44 6.96 -10.98 -0.08 12.36 16 11 O -0.52 -15.63 13.81 5.55 0.08 -15.56 16 12 C -0.10 -1.97 4.45 -29.03 -0.13 -2.10 16 13 C -0.04 -0.76 4.37 -104.67 -0.46 -1.21 16 14 C -0.11 -1.94 9.70 -39.62 -0.38 -2.32 16 15 C -0.11 -1.78 10.04 -39.53 -0.40 -2.18 16 16 C -0.11 -1.82 6.15 -104.05 -0.64 -2.46 16 17 C -0.10 -1.69 6.14 -104.20 -0.64 -2.33 16 18 C -0.09 -1.67 9.69 -39.54 -0.38 -2.06 16 19 C -0.08 -1.07 6.77 -26.85 -0.18 -1.26 16 20 C -0.12 -1.38 7.07 -25.32 -0.18 -1.56 16 21 C -0.08 -0.94 6.80 -26.69 -0.18 -1.12 16 22 C 0.08 1.51 5.87 -67.93 -0.40 1.11 16 23 C -0.17 -3.15 9.80 -26.69 -0.26 -3.41 16 24 C -0.21 -3.55 10.36 -26.69 -0.28 -3.83 16 25 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 26 H 0.08 1.50 7.51 -51.93 -0.39 1.11 16 27 H 0.08 1.42 8.05 -51.93 -0.42 1.01 16 28 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 38 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -33.56 338.05 -10.40 -43.96 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.11 Total: 4.67 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -4.78 Total: -20.03 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.35 Total: -35.45 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.56 -10.40 -43.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.599 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds