Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48492 * 109.47289 * 240.00484 * 3 2 1 5 5 H 1.48508 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00128 * 3 2 1 7 7 C 1.38950 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 197.99437 * 7 2 1 9 9 N 1.37096 * 120.00373 * 17.99962 * 7 2 1 10 10 C 1.34780 * 119.99784 * 44.47646 * 9 7 2 11 11 O 1.21289 * 120.00091 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99738 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.46703 * 179.97438 * 12 10 9 14 14 C 1.38256 * 120.02836 * 90.00593 * 13 12 10 15 15 C 1.38107 * 119.93195 * 179.97438 * 14 13 12 16 16 C 1.38502 * 120.21291 * 359.96726 * 15 14 13 17 17 C 1.38215 * 119.85044 * 0.03449 * 16 15 14 18 18 C 1.38098 * 120.03259 * 269.99268 * 13 12 10 19 19 C 1.51377 * 109.75188 * 179.97438 * 17 16 15 20 20 C 1.54341 * 105.17367 * 342.82039 * 19 17 16 21 21 C 1.51675 * 130.30672 * 179.83332 * 16 15 14 22 22 C 1.46493 * 119.99993 * 224.47830 * 9 7 2 23 23 C 1.52998 * 117.50321 * 3.20167 * 22 9 7 24 24 C 1.53008 * 117.49715 * 294.54149 * 22 9 7 25 25 H 0.96992 * 119.99964 * 354.95160 * 1 2 3 26 26 H 1.08996 * 109.47057 * 60.00003 * 12 10 9 27 27 H 1.08997 * 109.46901 * 299.99998 * 12 10 9 28 28 H 1.08001 * 120.03589 * 359.97438 * 14 13 12 29 29 H 1.07992 * 119.89237 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.89511 * 0.03697 * 18 13 12 31 31 H 1.09005 * 110.30128 * 223.89442 * 19 17 16 32 32 H 1.09007 * 110.38343 * 101.79311 * 19 17 16 33 33 H 1.08998 * 110.82232 * 144.56444 * 20 19 17 34 34 H 1.09000 * 110.82260 * 267.91918 * 20 19 17 35 35 H 1.09006 * 110.25435 * 78.28883 * 21 16 15 36 36 H 1.09005 * 110.49247 * 316.04423 * 21 16 15 37 37 H 1.08999 * 115.55358 * 148.87826 * 22 9 7 38 38 H 1.09006 * 117.49333 * 0.02562 * 23 22 9 39 39 H 1.08996 * 117.50218 * 145.02272 * 23 22 9 40 40 H 1.08998 * 117.49705 * 214.97766 * 24 22 9 41 41 H 1.08991 * 117.49687 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0493 -1.2263 0.2884 9 7 1.3738 -2.3615 -0.3679 10 6 0.5768 -2.3773 -1.4547 11 8 0.4219 -1.3672 -2.1080 12 6 -0.1218 -3.6503 -1.8582 13 6 -0.9450 -3.4008 -3.0957 14 6 -0.3862 -3.5840 -4.3469 15 6 -1.1426 -3.3553 -5.4796 16 6 -2.4601 -2.9435 -5.3664 17 6 -3.0186 -2.7604 -4.1155 18 6 -2.2582 -2.9894 -2.9808 19 6 -4.4574 -2.3120 -4.2583 20 6 -4.5848 -1.8212 -5.7160 21 6 -3.4848 -2.6272 -6.4391 22 6 1.5614 -3.5816 0.4208 23 6 2.4175 -3.4812 1.6848 24 6 2.9616 -4.1979 0.4465 25 1 -0.4850 0.8367 0.0739 26 1 -0.7735 -3.9793 -1.0489 27 1 0.6198 -4.4221 -2.0642 28 1 0.6408 -3.9055 -4.4386 29 1 -0.7053 -3.4982 -6.4567 30 1 -2.6939 -2.8462 -2.0030 31 1 -4.6704 -1.4980 -3.5652 32 1 -5.1349 -3.1470 -4.0796 33 1 -5.5686 -2.0595 -6.1204 34 1 -4.3889 -0.7511 -5.7832 35 1 -3.8982 -3.5486 -6.8494 36 1 -3.0357 -2.0277 -7.2309 37 1 0.7111 -4.2633 0.4417 38 1 2.8408 -2.5071 1.9298 39 1 2.1306 -4.0970 2.5372 40 1 3.0324 -5.2849 0.4848 41 1 3.7430 -3.6957 -0.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299296333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = 2.712745 kcal Electronic energy + Delta-G solvation = -22323.663989 eV Core-core repulsion = 19168.393192 eV Total energy + Delta-G solvation = -3155.270797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11884 -40.19091 -37.86661 -36.69098 -34.75122 -33.10727 -32.58178 -31.31166 -28.81294 -27.76370 -26.17676 -23.48567 -23.13969 -22.79030 -21.74174 -21.63576 -20.48853 -18.25445 -17.78320 -17.06171 -16.72686 -16.66153 -16.20426 -15.92453 -15.54550 -15.43679 -14.98268 -14.48230 -14.10401 -14.02095 -13.68990 -13.54532 -13.38491 -13.17892 -12.86350 -12.78878 -12.48593 -12.40787 -12.19814 -12.12484 -12.05191 -12.01486 -11.70446 -11.62243 -11.54680 -11.19984 -10.71520 -9.97323 -9.60457 -9.20276 -8.93638 -8.19364 -5.97392 0.48009 0.54201 1.33246 1.42237 1.45224 2.25582 2.43559 2.77977 3.12621 3.23344 3.38402 3.53253 3.69822 3.94724 4.13727 4.15511 4.18870 4.19234 4.22075 4.32221 4.38949 4.51160 4.60004 4.68239 4.69657 4.75998 4.82776 4.90717 4.93597 4.95843 5.06498 5.09308 5.25685 5.32802 5.33853 5.37332 5.46678 5.50330 5.55524 5.74403 5.78951 6.17568 6.22463 7.05467 7.24218 7.72641 8.40551 8.88989 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.005064 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.952232 B = 5527.876395 C = 6448.886298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.022 3.978 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.355 4.355 8 H 0.076 0.924 9 N -0.447 5.447 10 C 0.474 3.526 11 O -0.580 6.580 12 C -0.084 4.084 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.082 4.082 20 C -0.115 4.115 21 C -0.074 4.074 22 C 0.043 3.957 23 C -0.172 4.172 24 C -0.179 4.179 25 H 0.257 0.743 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -10.690 -7.350 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.184 4.184 3 Si 0.792 3.208 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.093 0.907 9 N -0.168 5.168 10 C 0.263 3.737 11 O -0.460 6.460 12 C -0.124 4.124 13 C -0.065 4.065 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.062 4.062 23 C -0.209 4.209 24 C -0.217 4.217 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.884 -10.041 -7.729 13.970 hybrid contribution 0.599 1.231 0.597 1.494 sum -5.284 -8.810 -7.131 12.506 Atomic orbital electron populations 1.69935 1.07928 1.27415 1.45332 1.26027 0.95481 1.02476 0.94383 0.85425 0.78176 0.78431 0.78762 1.20920 1.21462 1.17885 1.19020 0.94513 0.85270 1.49473 0.90678 1.43006 1.44024 1.07839 1.21928 1.20575 0.82523 0.89734 0.80896 1.90498 1.63956 1.36962 1.54633 1.20584 0.99042 0.96619 0.96174 1.19426 0.93638 0.98781 0.94688 1.21046 0.99806 1.01361 0.91929 1.20818 0.93329 1.00240 0.98838 1.21055 0.94914 0.99898 0.96063 1.20884 0.97598 0.99849 0.93244 1.20532 0.94250 1.00620 0.97934 1.21123 0.91207 1.01055 0.98555 1.22317 0.99949 0.99666 0.93293 1.21135 0.93256 1.01121 0.95530 1.22029 0.95041 0.90629 0.98494 1.23113 1.03690 1.02050 0.92055 1.23332 0.96784 1.00463 1.01170 0.93399 0.88896 0.87171 0.85485 0.84069 0.88032 0.91801 0.88683 0.87711 0.91711 0.88383 0.89991 0.85726 0.90226 0.86489 0.85620 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.40 11.75 21.66 0.25 -54.14 16 2 C 0.02 1.31 4.39 84.93 0.37 1.68 16 3 Si 0.97 47.09 29.59 68.60 2.03 49.12 16 4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.25 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.36 -20.02 7.91 84.04 0.66 -19.36 16 8 H 0.08 4.10 7.27 -2.91 -0.02 4.08 16 9 N -0.45 -22.82 2.83 -613.12 -1.74 -24.55 16 10 C 0.47 24.86 6.96 87.66 0.61 25.47 16 11 O -0.58 -36.23 13.81 -3.06 -0.04 -36.27 16 12 C -0.08 -3.35 4.45 29.10 0.13 -3.22 16 13 C -0.06 -2.59 4.37 -19.89 -0.09 -2.67 16 14 C -0.12 -4.42 9.70 22.24 0.22 -4.20 16 15 C -0.11 -3.59 10.04 22.30 0.22 -3.37 16 16 C -0.12 -3.64 6.15 -19.50 -0.12 -3.76 16 17 C -0.12 -3.92 6.14 -19.59 -0.12 -4.04 16 18 C -0.12 -4.56 9.69 22.30 0.22 -4.34 16 19 C -0.08 -2.12 6.77 30.52 0.21 -1.91 16 20 C -0.11 -2.33 7.07 31.51 0.22 -2.10 16 21 C -0.07 -1.57 6.80 30.62 0.21 -1.36 16 22 C 0.04 1.67 5.87 44.99 0.26 1.93 16 23 C -0.17 -5.90 9.80 30.62 0.30 -5.60 16 24 C -0.18 -5.63 10.36 30.62 0.32 -5.31 16 25 H 0.26 15.59 8.32 -92.71 -0.77 14.82 16 26 H 0.09 3.41 7.51 -2.39 -0.02 3.39 16 27 H 0.11 3.67 8.05 -2.39 -0.02 3.65 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 37 H 0.13 4.18 6.96 -2.39 -0.02 4.16 16 38 H 0.08 3.19 6.73 -2.38 -0.02 3.17 16 39 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -76.98 338.05 5.14 -71.84 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 1.01 Total: 26.17 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.63 Total: -32.16 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.48 Total: -78.69 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.04 Total: -36.27 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.98 5.14 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.549 kcal (2) G-P(sol) polarization free energy of solvation -76.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds