Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47486 * 2 1 4 4 C 1.53005 * 109.46883 * 120.00572 * 2 1 3 5 5 N 1.46897 * 109.47306 * 65.47725 * 4 2 1 6 6 C 1.46908 * 110.99680 * 197.61540 * 5 4 2 7 7 C 1.50695 * 109.47010 * 66.04597 * 6 5 4 8 8 H 1.07999 * 120.00436 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99757 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00083 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99968 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47060 * 90.00306 * 11 9 7 13 13 H 1.48505 * 109.47188 * 210.00069 * 11 9 7 14 14 H 1.48499 * 109.47376 * 330.00119 * 11 9 7 15 15 C 1.46899 * 111.00101 * 73.66317 * 5 4 2 16 16 C 1.53000 * 109.47011 * 200.05046 * 15 5 4 17 17 N 1.46493 * 109.47068 * 182.07111 * 16 15 5 18 18 C 1.35047 * 126.03666 * 124.99865 * 17 16 15 19 19 C 1.35377 * 107.73167 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 126.04611 * 179.97438 * 19 18 17 21 21 C 1.39933 * 107.90356 * 0.02562 * 19 18 17 22 22 N 1.30848 * 108.21494 * 359.75842 * 21 19 18 23 23 H 1.08997 * 109.47826 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47075 * 300.00239 * 1 2 3 25 25 H 1.08997 * 109.47024 * 59.99557 * 1 2 3 26 26 H 1.09004 * 109.47075 * 239.99761 * 2 1 3 27 27 H 1.09000 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47351 * 300.00243 * 3 2 1 29 29 H 1.09005 * 109.46760 * 60.00161 * 3 2 1 30 30 H 1.09000 * 109.46571 * 305.47287 * 4 2 1 31 31 H 1.09007 * 109.46857 * 185.48182 * 4 2 1 32 32 H 1.08999 * 109.46599 * 186.04704 * 6 5 4 33 33 H 1.09000 * 109.47021 * 306.04246 * 6 5 4 34 34 H 0.97003 * 120.00536 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46937 * 320.04847 * 15 5 4 36 36 H 1.09000 * 109.47006 * 80.04681 * 15 5 4 37 37 H 1.08998 * 109.46876 * 302.07376 * 16 15 5 38 38 H 1.08999 * 109.47051 * 62.07354 * 16 15 5 39 39 H 1.08004 * 126.13456 * 359.94359 * 18 17 16 40 40 H 1.07997 * 125.89107 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 1.6612 -2.1393 1.1848 6 6 1.7507 -2.7687 2.5092 7 6 0.7179 -2.1628 3.4242 8 1 0.0610 -1.3875 3.0587 9 6 0.6116 -2.5984 4.7280 10 7 1.4119 -3.5423 5.1733 11 14 -0.6682 -1.8470 5.8624 12 1 -1.9324 -2.6197 5.7630 13 1 -0.1730 -1.8859 7.2619 14 1 -0.9164 -0.4381 5.4642 15 6 2.4828 -2.8596 0.2030 16 6 1.7725 -4.1513 -0.2068 17 7 2.6140 -4.8938 -1.1483 18 6 3.0208 -6.1742 -1.0111 19 6 3.7780 -6.4841 -2.0897 20 17 4.5427 -8.0121 -2.3959 21 6 3.8361 -5.3544 -2.9134 22 7 3.1349 -4.4026 -2.3524 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.5987 -0.2673 2.1365 31 1 3.1256 -0.6372 1.2997 32 1 1.5698 -3.8395 2.4155 33 1 2.7452 -2.6032 2.9237 34 1 1.3369 -3.8490 6.0905 35 1 2.6319 -2.2324 -0.6760 36 1 3.4493 -3.1010 0.6453 37 1 1.5904 -4.7620 0.6775 38 1 0.8223 -3.9082 -0.6824 39 1 2.7849 -6.8327 -0.1882 40 1 4.3652 -5.2818 -3.8520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312887334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = 61.110496 kcal Electronic energy + Delta-G solvation = -20410.331466 eV Core-core repulsion = 17287.452887 eV Total energy + Delta-G solvation = -3122.878579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20927 -37.78484 -36.42001 -34.58690 -33.28945 -32.17191 -30.13916 -28.37726 -27.05164 -26.70429 -24.62794 -23.18780 -21.16231 -21.08859 -20.34123 -19.20965 -17.34131 -16.52001 -15.62546 -15.02114 -14.80430 -14.74941 -14.36514 -14.00018 -13.69707 -13.41795 -13.33063 -13.09307 -12.50373 -12.28520 -12.01569 -11.85660 -11.76697 -11.48105 -11.41466 -11.14968 -11.05047 -10.77033 -10.73798 -10.52214 -10.42073 -10.31028 -10.02397 -9.71656 -9.52012 -9.26426 -8.52072 -8.39983 -7.41332 -6.11800 -4.13241 1.78421 1.99510 2.58493 2.84126 3.26462 3.33298 3.36220 4.33858 4.49148 4.78140 4.90965 5.09631 5.24164 5.28861 5.32443 5.43712 5.49812 5.57069 5.64143 5.69330 5.91519 5.98304 6.03195 6.14448 6.23235 6.26719 6.35046 6.41143 6.46715 6.53919 6.83294 6.86184 6.91685 7.13130 7.23550 7.57229 7.70494 7.93789 8.07140 8.41278 8.94772 9.51707 10.99029 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.004225 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.421391 B = 6625.042432 C = 8234.427746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.070 3.930 5 N -0.531 5.531 6 C 0.191 3.809 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.046 3.954 16 C 0.137 3.863 17 N -0.350 5.350 18 C 0.078 3.922 19 C -0.197 4.197 20 Cl -0.052 7.052 21 C 0.056 3.944 22 N -0.280 5.280 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.018 0.982 32 H 0.029 0.971 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.183 0.817 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -1.837 -13.291 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.058 4.058 5 N -0.256 5.256 6 C 0.066 3.934 7 C -0.546 4.546 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.083 4.083 16 C 0.016 3.984 17 N -0.132 5.132 18 C -0.071 4.071 19 C -0.235 4.235 20 Cl -0.024 7.024 21 C -0.131 4.131 22 N -0.102 5.102 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.200 0.800 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.423 -0.786 -13.268 13.510 hybrid contribution 0.622 -0.761 1.118 1.488 sum 3.045 -1.547 -12.150 12.621 Atomic orbital electron populations 1.21660 0.94792 1.02583 0.99945 1.21149 0.96728 0.94867 0.98486 1.21811 1.00421 0.96733 1.01331 1.22052 0.96675 0.88782 0.98318 1.61963 1.52051 1.01693 1.09900 1.19803 0.96029 0.94704 0.82881 1.21133 1.17547 1.21081 0.94884 0.91629 1.24975 0.96166 0.95180 0.98136 1.69945 1.38135 1.28925 1.16755 0.86523 0.81547 0.79676 0.79832 1.20606 1.21339 1.19808 1.22200 0.94531 0.94126 0.97478 1.21979 0.92240 0.94085 0.90075 1.48747 1.38885 1.08898 1.16633 1.22353 0.97410 0.87774 0.99565 1.20718 1.11517 0.90802 1.00502 1.98307 1.80439 1.27992 1.95684 1.23807 0.99256 0.89604 1.00419 1.77464 1.15013 1.22293 0.95433 0.91343 0.93145 0.94493 0.91999 0.93309 0.93180 0.92705 0.89259 0.96329 0.95318 0.99078 0.92860 0.90565 0.95177 0.87569 0.88641 0.80025 0.79594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.08 37.16 0.34 -1.67 16 2 C -0.09 -1.42 2.94 -90.62 -0.27 -1.69 16 3 C -0.15 -1.90 9.19 37.16 0.34 -1.56 16 4 C 0.07 1.28 4.18 -3.82 -0.02 1.26 16 5 N -0.53 -10.32 3.84 -236.06 -0.91 -11.23 16 6 C 0.19 4.56 4.55 -4.97 -0.02 4.54 16 7 C -0.51 -13.31 8.26 -34.44 -0.28 -13.59 16 8 H 0.07 1.71 7.28 -52.49 -0.38 1.32 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 11 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.05 0.78 5.01 -3.82 -0.02 0.76 16 16 C 0.14 2.07 6.65 -4.05 -0.03 2.04 16 17 N -0.35 -5.10 3.68 -61.33 -0.23 -5.32 16 18 C 0.08 1.02 11.43 -17.16 -0.20 0.82 16 19 C -0.20 -2.47 6.65 -39.97 -0.27 -2.74 16 20 Cl -0.05 -0.59 29.30 -51.86 -1.52 -2.10 16 21 C 0.06 0.70 12.02 -17.34 -0.21 0.49 16 22 N -0.28 -4.16 12.42 30.64 0.38 -3.78 16 23 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 31 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 32 H 0.03 0.71 6.62 -51.93 -0.34 0.37 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.08 1.26 6.30 -51.93 -0.33 0.93 16 36 H 0.03 0.55 7.99 -51.93 -0.42 0.14 16 37 H 0.11 1.63 6.68 -51.93 -0.35 1.29 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.18 1.94 8.06 -52.48 -0.42 1.51 16 40 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -28.17 343.98 -8.35 -36.52 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.25 Total: -0.38 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.72 Total: -9.90 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.02 Total: -45.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.17 -8.35 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312887334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.629 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds