Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47486 * 2 1 4 4 C 1.53005 * 109.46883 * 120.00572 * 2 1 3 5 5 N 1.46897 * 109.47306 * 65.47725 * 4 2 1 6 6 C 1.46908 * 110.99680 * 197.61540 * 5 4 2 7 7 C 1.50695 * 109.47010 * 66.04597 * 6 5 4 8 8 H 1.07999 * 120.00436 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99757 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00083 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99968 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47060 * 90.00306 * 11 9 7 13 13 H 1.48505 * 109.47188 * 210.00069 * 11 9 7 14 14 H 1.48499 * 109.47376 * 330.00119 * 11 9 7 15 15 C 1.46899 * 111.00101 * 73.66317 * 5 4 2 16 16 C 1.53000 * 109.47011 * 200.05046 * 15 5 4 17 17 N 1.46493 * 109.47068 * 182.07111 * 16 15 5 18 18 C 1.35047 * 126.03666 * 124.99865 * 17 16 15 19 19 C 1.35377 * 107.73167 * 179.97438 * 18 17 16 20 20 Cl 1.73597 * 126.04611 * 179.97438 * 19 18 17 21 21 C 1.39933 * 107.90356 * 0.02562 * 19 18 17 22 22 N 1.30848 * 108.21494 * 359.75842 * 21 19 18 23 23 H 1.08997 * 109.47826 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47075 * 300.00239 * 1 2 3 25 25 H 1.08997 * 109.47024 * 59.99557 * 1 2 3 26 26 H 1.09004 * 109.47075 * 239.99761 * 2 1 3 27 27 H 1.09000 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47351 * 300.00243 * 3 2 1 29 29 H 1.09005 * 109.46760 * 60.00161 * 3 2 1 30 30 H 1.09000 * 109.46571 * 305.47287 * 4 2 1 31 31 H 1.09007 * 109.46857 * 185.48182 * 4 2 1 32 32 H 1.08999 * 109.46599 * 186.04704 * 6 5 4 33 33 H 1.09000 * 109.47021 * 306.04246 * 6 5 4 34 34 H 0.97003 * 120.00536 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46937 * 320.04847 * 15 5 4 36 36 H 1.09000 * 109.47006 * 80.04681 * 15 5 4 37 37 H 1.08998 * 109.46876 * 302.07376 * 16 15 5 38 38 H 1.08999 * 109.47051 * 62.07354 * 16 15 5 39 39 H 1.08004 * 126.13456 * 359.94359 * 18 17 16 40 40 H 1.07997 * 125.89107 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 1.6612 -2.1393 1.1848 6 6 1.7507 -2.7687 2.5092 7 6 0.7179 -2.1628 3.4242 8 1 0.0610 -1.3875 3.0587 9 6 0.6116 -2.5984 4.7280 10 7 1.4119 -3.5423 5.1733 11 14 -0.6682 -1.8470 5.8624 12 1 -1.9324 -2.6197 5.7630 13 1 -0.1730 -1.8859 7.2619 14 1 -0.9164 -0.4381 5.4642 15 6 2.4828 -2.8596 0.2030 16 6 1.7725 -4.1513 -0.2068 17 7 2.6140 -4.8938 -1.1483 18 6 3.0208 -6.1742 -1.0111 19 6 3.7780 -6.4841 -2.0897 20 17 4.5427 -8.0121 -2.3959 21 6 3.8361 -5.3544 -2.9134 22 7 3.1349 -4.4026 -2.3524 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.5987 -0.2673 2.1365 31 1 3.1256 -0.6372 1.2997 32 1 1.5698 -3.8395 2.4155 33 1 2.7452 -2.6032 2.9237 34 1 1.3369 -3.8490 6.0905 35 1 2.6319 -2.2324 -0.6760 36 1 3.4493 -3.1010 0.6453 37 1 1.5904 -4.7620 0.6775 38 1 0.8223 -3.9082 -0.6824 39 1 2.7849 -6.8327 -0.1882 40 1 4.3652 -5.2818 -3.8520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312887334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = 45.860298 kcal Electronic energy + Delta-G solvation = -20410.992764 eV Core-core repulsion = 17287.452887 eV Total energy + Delta-G solvation = -3123.539877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25638 -39.29866 -37.36913 -35.88847 -34.99425 -33.74077 -31.24214 -29.83418 -28.68743 -27.86282 -26.14853 -24.77682 -22.52068 -22.19638 -21.60597 -20.58823 -18.55999 -18.40092 -17.07449 -16.41419 -16.26086 -16.05369 -15.67161 -15.40232 -14.92621 -14.73701 -14.58928 -14.20512 -14.13093 -13.76405 -13.50239 -13.27050 -12.97242 -12.82291 -12.67301 -12.57276 -12.46386 -12.41456 -12.26088 -11.93126 -11.74393 -11.55409 -11.48037 -11.32780 -11.07972 -10.59906 -10.58225 -9.43014 -9.08707 -8.19533 -6.27619 0.73759 0.96363 1.42634 1.43178 1.53643 1.60097 1.79873 2.41131 3.11507 3.17875 3.58298 3.82673 3.98632 4.00086 4.02268 4.22231 4.30000 4.38544 4.40465 4.59322 4.62350 4.72495 4.83192 4.88574 4.94040 4.94589 5.11186 5.15126 5.23501 5.25828 5.34456 5.40034 5.55016 5.64554 5.67440 5.81344 6.05325 6.29407 6.52487 6.58027 6.88281 7.41839 8.91489 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.004225 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.421391 B = 6625.042432 C = 8234.427746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.141 4.141 4 C 0.070 3.930 5 N -0.527 5.527 6 C 0.206 3.794 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.006 3.994 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.056 3.944 16 C 0.148 3.852 17 N -0.363 5.363 18 C 0.072 3.928 19 C -0.200 4.200 20 Cl -0.039 7.039 21 C 0.062 3.938 22 N -0.309 5.309 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.016 0.984 33 H -0.043 1.043 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.200 0.800 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -1.335 -14.624 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 C -0.199 4.199 4 C -0.058 4.058 5 N -0.251 5.251 6 C 0.080 3.920 7 C -0.554 4.554 8 H 0.083 0.917 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.786 3.214 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.190 1.190 15 C -0.073 4.073 16 C 0.027 3.973 17 N -0.145 5.145 18 C -0.077 4.077 19 C -0.239 4.239 20 Cl -0.011 7.011 21 C -0.124 4.124 22 N -0.130 5.130 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.034 0.966 33 H -0.026 1.026 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.217 0.783 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.954 -0.280 -14.626 14.759 hybrid contribution 0.854 -0.973 1.455 1.947 sum 2.808 -1.253 -13.171 13.526 Atomic orbital electron populations 1.21612 0.94562 1.01685 1.00716 1.21090 0.96814 0.95941 0.96566 1.21778 1.00724 0.95090 1.02282 1.22080 0.96282 0.88176 0.99222 1.61932 1.52795 1.02387 1.08027 1.19466 0.93553 0.94201 0.84755 1.21424 1.17667 1.20853 0.95501 0.91670 1.25791 0.98087 0.95573 0.99736 1.70064 1.39845 1.30336 1.17171 0.85508 0.79087 0.79182 0.77624 1.19886 1.21227 1.18960 1.22144 0.93515 0.95034 0.96652 1.21713 0.92326 0.93057 0.90199 1.48634 1.39640 1.09414 1.16798 1.22757 0.97154 0.87465 1.00307 1.20835 1.11296 0.91450 1.00317 1.98314 1.80124 1.27044 1.95592 1.24342 0.98131 0.88911 1.01022 1.77427 1.16257 1.23507 0.95849 0.93072 0.94040 0.92008 0.91517 0.92882 0.91019 0.92951 0.91713 0.96829 0.96553 1.02571 0.92814 0.89622 0.96885 0.88220 0.88139 0.78345 0.76666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.08 71.98 0.65 -3.07 16 2 C -0.09 -2.49 2.94 -10.79 -0.03 -2.52 16 3 C -0.14 -3.41 9.19 71.98 0.66 -2.75 16 4 C 0.07 2.61 4.18 86.31 0.36 2.97 16 5 N -0.53 -20.91 3.84 -900.77 -3.46 -24.37 16 6 C 0.21 10.23 4.55 85.55 0.39 10.62 16 7 C -0.52 -27.57 8.26 25.60 0.21 -27.36 16 8 H 0.07 3.42 7.28 -2.91 -0.02 3.40 16 9 C 0.01 0.34 5.46 84.66 0.46 0.81 16 10 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 11 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 C 0.06 1.91 5.01 86.30 0.43 2.35 16 16 C 0.15 4.49 6.65 86.38 0.57 5.07 16 17 N -0.36 -10.39 3.68 -347.94 -1.28 -11.67 16 18 C 0.07 1.80 11.43 83.54 0.95 2.76 16 19 C -0.20 -4.74 6.65 22.02 0.15 -4.59 16 20 Cl -0.04 -0.80 29.30 -2.72 -0.08 -0.88 16 21 C 0.06 1.46 12.02 85.25 1.02 2.48 16 22 N -0.31 -8.83 12.42 -56.98 -0.71 -9.54 16 23 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.91 6.51 -2.39 -0.02 1.89 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 2.71 6.58 -2.39 -0.02 2.69 16 31 H 0.01 0.51 8.03 -2.38 -0.02 0.49 16 32 H 0.02 0.85 6.62 -2.39 -0.02 0.83 16 33 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.09 2.79 6.30 -2.39 -0.02 2.78 16 36 H 0.01 0.49 7.99 -2.39 -0.02 0.47 16 37 H 0.10 3.14 6.68 -2.39 -0.02 3.13 16 38 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.20 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.22 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -60.46 343.98 3.63 -56.83 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.01 Total: 11.82 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.84 Total: -13.24 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -5.17 Total: -99.41 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -60.46 3.63 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312887334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.692 kcal (2) G-P(sol) polarization free energy of solvation -60.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds