Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35450 * 117.00702 * 2 1 4 4 N 1.32340 * 119.18896 * 359.97438 * 3 2 1 5 5 C 1.32290 * 120.75454 * 180.02562 * 4 3 2 6 6 C 1.38616 * 119.17842 * 359.97438 * 5 4 3 7 7 C 1.38571 * 118.51729 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.41082 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47290 * 94.99720 * 8 7 6 10 10 C 1.39684 * 120.00083 * 180.02562 * 9 8 7 11 11 C 1.39342 * 119.95205 * 359.72458 * 10 9 8 12 12 C 1.38473 * 120.42502 * 179.72098 * 11 10 9 13 13 C 1.37692 * 120.32187 * 0.55869 * 12 11 10 14 14 C 1.40749 * 119.89284 * 359.71991 * 13 12 11 15 15 C 1.41413 * 120.20735 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00014 * 204.44699 * 15 14 13 17 17 C 1.39931 * 119.99684 * 24.44052 * 15 14 13 18 18 N 1.30826 * 120.00619 * 17.90973 * 17 15 14 19 19 Si 1.86811 * 119.99541 * 197.90587 * 17 15 14 20 20 H 1.48493 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46949 * 120.00270 * 19 17 15 22 22 H 1.48500 * 109.46997 * 239.99939 * 19 17 15 23 23 C 1.38275 * 119.95082 * 179.97438 * 10 9 8 24 24 N 1.32303 * 119.20152 * 180.27031 * 3 2 1 25 25 H 1.09002 * 109.46547 * 60.00495 * 1 2 3 26 26 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47017 * 300.00277 * 1 2 3 28 28 H 1.07996 * 120.40754 * 180.02562 * 5 4 3 29 29 H 1.07995 * 120.73755 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47345 * 214.99609 * 8 7 6 31 31 H 1.09004 * 109.47164 * 334.99738 * 8 7 6 32 32 H 0.96997 * 119.99840 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.78434 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.84200 * 180.27914 * 12 11 10 35 35 H 1.07998 * 120.05234 * 179.74811 * 13 12 11 36 36 H 0.96999 * 120.00156 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.16432 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2068 0.0000 4 7 1.3078 2.3065 -0.0005 5 6 1.8761 3.5011 -0.0010 6 6 3.2593 3.5914 -0.0005 7 6 3.9988 2.4196 0.0000 8 6 5.5050 2.4680 0.0000 9 7 5.9970 2.3641 1.3761 10 6 7.3703 2.3867 1.6304 11 6 8.2716 2.5024 0.5741 12 6 9.6348 2.5316 0.8155 13 6 10.1152 2.4350 2.1022 14 6 9.2170 2.3118 3.1789 15 6 9.7030 2.2127 4.5032 16 1 9.1022 1.7380 5.2647 17 6 10.9625 2.7296 4.8267 18 7 11.5380 3.5955 4.0326 19 14 11.8221 2.1832 6.3927 20 1 10.9671 1.2045 7.1110 21 1 13.1197 1.5479 6.0492 22 1 12.0633 3.3625 7.2622 23 6 7.8335 2.2891 2.9296 24 7 3.3661 1.2575 -0.0054 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2698 4.3948 -0.0010 29 1 3.7496 4.5537 -0.0013 30 1 5.8953 1.6381 -0.5890 31 1 5.8382 3.4104 -0.4347 32 1 5.3690 2.2796 2.1105 33 1 7.9044 2.5746 -0.4391 34 1 10.3249 2.6260 -0.0100 35 1 11.1794 2.4541 2.2852 36 1 12.4109 3.9540 4.2571 37 1 7.1360 2.1957 3.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313410931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = 43.191938 kcal Electronic energy + Delta-G solvation = -20677.843051 eV Core-core repulsion = 17420.787220 eV Total energy + Delta-G solvation = -3257.055831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44462 -38.68113 -37.78312 -35.49225 -33.96042 -32.98566 -31.68015 -29.75599 -28.57609 -27.76043 -25.82024 -25.18013 -24.10805 -22.60989 -20.76182 -20.13179 -18.63548 -18.05427 -17.36658 -16.58941 -16.09259 -15.50296 -15.37166 -14.98325 -14.73135 -14.36683 -14.32420 -13.88890 -13.46495 -13.13670 -12.70267 -12.50947 -12.22496 -12.05007 -11.60502 -11.56066 -11.34074 -11.17301 -11.05273 -10.93675 -10.58700 -10.38962 -9.78402 -9.39386 -9.31959 -9.22937 -9.20855 -8.76128 -7.37670 -6.70138 -6.24693 -4.29591 0.72313 0.83757 2.34167 2.85683 3.11605 3.17504 3.23029 3.36763 3.47486 3.77129 3.98622 4.13865 4.42063 4.42848 4.73051 4.85085 4.93332 4.97831 4.99238 5.27103 5.37195 5.69974 5.74943 5.87660 5.93021 6.31903 6.53325 6.56299 6.93180 7.00220 7.04774 7.13161 7.34109 7.37339 7.75770 7.88037 7.91588 8.15275 8.24594 8.49986 8.55830 8.79210 9.01358 9.11993 10.26013 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.002931 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.383442 B = 9549.819586 C = 9943.147566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.290 6.290 3 C 0.496 3.504 4 N -0.571 5.571 5 C 0.184 3.816 6 C -0.250 4.250 7 C 0.209 3.791 8 C 0.186 3.814 9 N -0.755 5.755 10 C 0.225 3.775 11 C -0.301 4.301 12 C -0.074 4.074 13 C -0.198 4.198 14 C 0.141 3.859 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.276 1.276 23 C -0.286 4.286 24 N -0.510 5.510 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.389 0.611 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.278 0.722 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 0.265 -7.483 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.191 6.191 3 C 0.194 3.806 4 N -0.301 5.301 5 C 0.019 3.981 6 C -0.273 4.273 7 C 0.062 3.938 8 C 0.060 3.940 9 N -0.390 5.390 10 C 0.128 3.872 11 C -0.324 4.324 12 C -0.093 4.093 13 C -0.218 4.218 14 C 0.138 3.862 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.729 3.271 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.310 4.310 24 N -0.235 5.235 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.191 0.809 29 H 0.173 0.827 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.826 -0.801 -7.715 18.528 hybrid contribution 0.269 0.768 0.938 1.241 sum -16.557 -0.033 -6.777 17.890 Atomic orbital electron populations 1.22984 0.75781 1.03530 1.02729 1.86110 1.23244 1.22695 1.87023 1.20717 0.86080 0.84779 0.89045 1.68052 1.41546 0.99351 1.21119 1.22971 0.92548 0.94350 0.88238 1.22714 0.95962 1.01198 1.07472 1.21760 0.97380 0.86674 0.88018 1.19973 0.83981 1.02538 0.87518 1.44177 1.04653 1.85683 1.04452 1.17412 0.80999 0.94922 0.93892 1.19850 0.93068 1.24208 0.95249 1.20433 0.93771 0.98998 0.96145 1.21193 0.99738 1.09812 0.91067 1.17336 0.89848 0.85823 0.93178 1.19582 1.00631 1.33750 0.95366 0.90596 1.25891 0.97048 0.92787 0.98275 1.69865 1.14986 1.20396 1.36455 0.86323 0.79636 0.79501 0.81591 1.18457 1.19745 1.20104 1.20384 0.95507 1.22378 0.92701 1.67453 1.07483 1.30304 1.18287 0.91984 0.87879 0.91918 0.80902 0.82720 0.90597 0.90492 0.77780 0.89582 0.89546 0.86725 0.91088 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.38 10.36 101.05 1.05 1.42 16 2 O -0.29 -3.81 10.55 -18.04 -0.19 -4.00 16 3 C 0.50 7.01 8.49 -91.25 -0.77 6.23 16 4 N -0.57 -6.82 9.23 -14.73 -0.14 -6.96 16 5 C 0.18 1.76 11.30 -17.21 -0.19 1.57 16 6 C -0.25 -2.62 9.83 -39.32 -0.39 -3.01 16 7 C 0.21 2.83 6.19 -82.26 -0.51 2.32 16 8 C 0.19 2.76 5.26 -5.19 -0.03 2.73 16 9 N -0.75 -13.68 5.72 -59.86 -0.34 -14.02 16 10 C 0.23 5.05 6.64 -83.86 -0.56 4.50 16 11 C -0.30 -6.74 9.32 -39.08 -0.36 -7.11 16 12 C -0.07 -1.78 10.02 -39.69 -0.40 -2.17 16 13 C -0.20 -5.25 8.70 -38.83 -0.34 -5.59 16 14 C 0.14 3.85 5.57 -106.85 -0.60 3.25 16 15 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 17 C 0.08 1.98 5.14 -17.35 -0.09 1.89 16 18 N -0.79 -20.74 10.96 55.55 0.61 -20.13 16 19 Si 0.90 18.94 29.60 -169.99 -5.03 13.91 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.29 -7.15 9.63 -38.68 -0.37 -7.53 16 24 N -0.51 -7.89 10.40 -10.95 -0.11 -8.00 16 25 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 31 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.39 6.79 8.47 -40.82 -0.35 6.45 16 33 H 0.09 1.70 6.70 -52.48 -0.35 1.35 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 3.14 6.15 -52.49 -0.32 2.82 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -30.97 323.16 -8.58 -39.55 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.34 Total: 9.17 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.90 Total: -14.38 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.02 Total: -49.11 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.19 Total: -4.00 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.97 -8.58 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.738 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds