Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35450 * 117.00702 * 2 1 4 4 N 1.32340 * 119.18896 * 359.97438 * 3 2 1 5 5 C 1.32290 * 120.75454 * 180.02562 * 4 3 2 6 6 C 1.38616 * 119.17842 * 359.97438 * 5 4 3 7 7 C 1.38571 * 118.51729 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.41082 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47290 * 94.99720 * 8 7 6 10 10 C 1.39684 * 120.00083 * 180.02562 * 9 8 7 11 11 C 1.39342 * 119.95205 * 359.72458 * 10 9 8 12 12 C 1.38473 * 120.42502 * 179.72098 * 11 10 9 13 13 C 1.37692 * 120.32187 * 0.55869 * 12 11 10 14 14 C 1.40749 * 119.89284 * 359.71991 * 13 12 11 15 15 C 1.41413 * 120.20735 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00014 * 204.44699 * 15 14 13 17 17 C 1.39931 * 119.99684 * 24.44052 * 15 14 13 18 18 N 1.30826 * 120.00619 * 17.90973 * 17 15 14 19 19 Si 1.86811 * 119.99541 * 197.90587 * 17 15 14 20 20 H 1.48493 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46949 * 120.00270 * 19 17 15 22 22 H 1.48500 * 109.46997 * 239.99939 * 19 17 15 23 23 C 1.38275 * 119.95082 * 179.97438 * 10 9 8 24 24 N 1.32303 * 119.20152 * 180.27031 * 3 2 1 25 25 H 1.09002 * 109.46547 * 60.00495 * 1 2 3 26 26 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47017 * 300.00277 * 1 2 3 28 28 H 1.07996 * 120.40754 * 180.02562 * 5 4 3 29 29 H 1.07995 * 120.73755 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47345 * 214.99609 * 8 7 6 31 31 H 1.09004 * 109.47164 * 334.99738 * 8 7 6 32 32 H 0.96997 * 119.99840 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.78434 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.84200 * 180.27914 * 12 11 10 35 35 H 1.07998 * 120.05234 * 179.74811 * 13 12 11 36 36 H 0.96999 * 120.00156 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.16432 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2068 0.0000 4 7 1.3078 2.3065 -0.0005 5 6 1.8761 3.5011 -0.0010 6 6 3.2593 3.5914 -0.0005 7 6 3.9988 2.4196 0.0000 8 6 5.5050 2.4680 0.0000 9 7 5.9970 2.3641 1.3761 10 6 7.3703 2.3867 1.6304 11 6 8.2716 2.5024 0.5741 12 6 9.6348 2.5316 0.8155 13 6 10.1152 2.4350 2.1022 14 6 9.2170 2.3118 3.1789 15 6 9.7030 2.2127 4.5032 16 1 9.1022 1.7380 5.2647 17 6 10.9625 2.7296 4.8267 18 7 11.5380 3.5955 4.0326 19 14 11.8221 2.1832 6.3927 20 1 10.9671 1.2045 7.1110 21 1 13.1197 1.5479 6.0492 22 1 12.0633 3.3625 7.2622 23 6 7.8335 2.2891 2.9296 24 7 3.3661 1.2575 -0.0054 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2698 4.3948 -0.0010 29 1 3.7496 4.5537 -0.0013 30 1 5.8953 1.6381 -0.5890 31 1 5.8382 3.4104 -0.4347 32 1 5.3690 2.2796 2.1105 33 1 7.9044 2.5746 -0.4391 34 1 10.3249 2.6260 -0.0100 35 1 11.1794 2.4541 2.2852 36 1 12.4109 3.9540 4.2571 37 1 7.1360 2.1957 3.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = 20.994088 kcal Electronic energy + Delta-G solvation = -20678.805622 eV Core-core repulsion = 17420.787220 eV Total energy + Delta-G solvation = -3258.018402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35497 -39.79423 -39.33128 -36.97089 -35.37793 -34.45460 -32.75617 -31.66785 -30.05601 -28.50284 -27.23743 -27.06305 -25.00730 -23.73273 -22.57412 -21.90631 -19.57687 -19.20001 -18.97943 -17.52368 -17.33632 -17.17667 -16.58441 -16.34746 -16.04940 -15.82862 -15.20805 -14.95700 -14.80192 -14.62712 -14.41126 -13.99293 -13.73054 -13.36782 -12.92519 -12.88296 -12.74687 -12.48667 -12.36833 -12.20400 -12.13594 -11.95459 -11.61610 -11.19863 -11.06224 -10.51737 -10.32557 -10.09649 -9.32255 -8.60034 -7.98610 -6.31208 -0.22242 -0.00801 1.05587 1.34697 1.40070 1.51257 1.54511 1.59275 2.23739 2.45933 2.81237 2.89426 3.00771 3.30966 3.56717 3.86942 3.99834 4.21967 4.36430 4.36591 4.48048 4.51081 4.59928 4.67551 4.73689 4.77663 5.09473 5.15048 5.18043 5.21871 5.41573 5.55816 5.66998 5.91734 6.02857 6.09410 6.21287 6.31258 6.61219 6.88291 6.92843 6.96551 7.03817 7.21002 8.38431 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.002931 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.383442 B = 9549.819586 C = 9943.147566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.480 3.520 4 N -0.570 5.570 5 C 0.191 3.809 6 C -0.237 4.237 7 C 0.189 3.811 8 C 0.186 3.814 9 N -0.747 5.747 10 C 0.236 3.764 11 C -0.299 4.299 12 C -0.074 4.074 13 C -0.231 4.231 14 C 0.112 3.888 15 C -0.503 4.503 16 H 0.069 0.931 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.264 1.264 23 C -0.310 4.310 24 N -0.549 5.549 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.064 0.936 28 H 0.220 0.780 29 H 0.183 0.817 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.392 0.608 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.287 0.713 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.108 1.302 -8.182 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.177 3.823 4 N -0.300 5.300 5 C 0.026 3.974 6 C -0.260 4.260 7 C 0.044 3.956 8 C 0.062 3.938 9 N -0.379 5.379 10 C 0.135 3.865 11 C -0.322 4.322 12 C -0.092 4.092 13 C -0.252 4.252 14 C 0.110 3.890 15 C -0.533 4.533 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.448 5.448 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.334 4.334 24 N -0.276 5.276 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.083 0.917 28 H 0.237 0.763 29 H 0.201 0.799 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.346 0.240 -8.442 20.196 hybrid contribution 0.534 0.480 1.016 1.244 sum -17.811 0.720 -7.427 19.311 Atomic orbital electron populations 1.23254 0.73624 1.05360 1.03060 1.86075 1.25475 1.22972 1.87043 1.20876 0.85968 0.85625 0.89843 1.68165 1.41298 0.99649 1.20898 1.23792 0.92782 0.94882 0.85979 1.23009 0.96343 1.01120 1.05523 1.21604 0.96621 0.87501 0.89922 1.20084 0.85375 1.03193 0.85191 1.44211 1.03014 1.84361 1.06363 1.17447 0.83066 0.92977 0.92969 1.20191 0.92456 1.22782 0.96745 1.20746 0.95114 0.97563 0.95817 1.21132 0.98894 1.12831 0.92316 1.17687 0.91063 0.86565 0.93729 1.19807 1.02283 1.35577 0.95608 0.91252 1.26728 0.97064 0.92203 1.01804 1.69911 1.15603 1.20951 1.38294 0.85198 0.78303 0.79195 0.77191 1.18495 1.18809 1.18883 1.20489 0.94946 1.23895 0.94096 1.67303 1.08706 1.31763 1.19781 0.91386 0.85405 0.91719 0.76330 0.79924 0.91571 0.88233 0.77473 0.86325 0.87065 0.88522 0.90231 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.36 113.37 1.17 1.81 16 2 O -0.31 -8.13 10.55 -87.48 -0.92 -9.05 16 3 C 0.48 13.12 8.49 180.57 1.53 14.65 16 4 N -0.57 -12.34 9.23 -313.46 -2.89 -15.23 16 5 C 0.19 2.95 11.30 84.71 0.96 3.91 16 6 C -0.24 -4.18 9.83 22.44 0.22 -3.96 16 7 C 0.19 4.79 6.19 42.56 0.26 5.05 16 8 C 0.19 5.17 5.26 85.63 0.45 5.62 16 9 N -0.75 -26.22 5.72 -343.29 -1.96 -28.18 16 10 C 0.24 10.47 6.64 38.16 0.25 10.72 16 11 C -0.30 -12.98 9.32 22.59 0.21 -12.77 16 12 C -0.07 -3.49 10.02 22.20 0.22 -3.26 16 13 C -0.23 -12.64 8.70 22.75 0.20 -12.45 16 14 C 0.11 6.36 5.57 -21.31 -0.12 6.24 16 15 C -0.50 -28.40 9.05 23.46 0.21 -28.19 16 16 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 17 C 0.04 1.93 5.14 85.25 0.44 2.37 16 18 N -0.82 -44.16 10.96 21.82 0.24 -43.92 16 19 Si 0.98 39.46 29.60 68.60 2.03 41.49 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.31 -15.93 9.63 22.86 0.22 -15.71 16 24 N -0.55 -16.64 10.40 -301.52 -3.14 -19.77 16 25 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 26 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 28 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.07 1.99 7.93 -2.39 -0.02 1.97 16 31 H 0.10 2.34 7.87 -2.38 -0.02 2.32 16 32 H 0.39 13.42 8.47 -92.71 -0.79 12.64 16 33 H 0.12 4.33 6.70 -2.91 -0.02 4.31 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.10 5.53 6.15 -2.91 -0.02 5.51 16 36 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 37 H 0.09 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -70.13 323.16 -0.10 -70.22 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.32 Total: 30.41 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 6.23 Total: -25.96 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -7.75 Total: -107.11 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.92 Total: -9.05 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -70.13 -0.10 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.217 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds