Wall clock time and date at job start Tue Mar 31 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 13 13 N 1.46496 * 109.47337 * 300.00145 * 12 2 1 14 14 C 1.34774 * 120.00339 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99971 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.86775 * 303.99001 * 16 14 13 18 18 C 1.54096 * 109.87933 * 64.99567 * 16 14 13 19 19 C 1.54810 * 104.18457 * 121.45664 * 18 16 14 20 20 C 1.55002 * 102.09393 * 20.88109 * 19 18 16 21 21 H 1.08998 * 110.61463 * 81.47566 * 20 19 18 22 22 C 1.50703 * 110.61653 * 204.31774 * 20 19 18 23 23 O 1.20824 * 119.99714 * 114.99894 * 22 20 19 24 24 O 1.34229 * 120.00228 * 294.99696 * 22 20 19 25 25 O 1.43747 * 109.87988 * 182.83507 * 16 14 13 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 35 35 H 0.97005 * 119.99865 * 0.02562 * 13 12 2 36 36 H 1.08997 * 110.49058 * 240.12772 * 18 16 14 37 37 H 1.08993 * 110.49018 * 2.65379 * 18 16 14 38 38 H 1.09001 * 110.90946 * 139.07619 * 19 18 16 39 39 H 1.09001 * 110.91021 * 262.65032 * 19 18 16 40 40 H 0.96703 * 117.00030 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 7 1.5518 -0.0307 2.4453 14 6 1.8770 -0.4915 3.6694 15 8 2.5735 -1.4781 3.7806 16 6 1.3742 0.2185 4.9000 17 1 1.6745 1.2660 4.8720 18 6 -0.1616 0.1155 4.9736 19 6 -0.4303 -0.5847 6.3279 20 6 0.8864 -0.3147 7.1000 21 1 0.8770 0.6837 7.5372 22 6 1.0994 -1.3576 8.1669 23 8 2.0368 -2.1161 8.0915 24 8 0.2477 -1.4437 9.2008 25 8 1.9020 -0.4128 6.0786 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 0.7093 1.1618 -3.4844 33 1 1.6768 -1.7489 1.2491 34 1 3.1300 -0.7216 1.2489 35 1 0.9937 0.7577 2.3564 36 1 -0.6116 1.1081 4.9616 37 1 -0.5436 -0.4857 4.1487 38 1 -1.2803 -0.1317 6.8382 39 1 -0.5876 -1.6543 6.1884 40 1 0.4257 -2.1282 9.8603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315915281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:13 Heat of formation + Delta-G solvation = -174.839824 kcal Electronic energy + Delta-G solvation = -23042.489815 eV Core-core repulsion = 19436.377747 eV Total energy + Delta-G solvation = -3606.112068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94859 -39.82399 -38.29869 -36.37311 -36.25791 -33.45246 -32.45668 -31.21167 -30.21659 -26.20251 -25.76250 -25.35693 -24.22924 -22.37506 -21.54987 -20.20885 -18.87046 -18.44120 -17.66601 -17.04906 -16.52588 -15.96559 -15.82021 -15.48312 -14.89211 -14.67369 -14.33522 -14.10599 -13.89906 -13.32669 -12.96028 -12.81670 -12.39585 -12.22809 -12.07430 -11.94562 -11.75259 -11.41586 -11.28552 -11.20834 -10.89532 -10.76247 -10.67731 -10.42118 -10.32413 -10.20836 -9.66997 -9.48952 -9.17052 -8.80267 -8.49080 -8.34752 -6.04640 -4.14473 1.89797 2.25281 2.93106 3.26154 3.32708 3.35254 3.41140 3.88489 4.15881 4.38635 4.46071 4.54352 4.65641 4.82286 4.98268 5.18446 5.22503 5.27643 5.39337 5.55326 5.69867 6.15436 6.17801 6.30073 6.37023 6.48213 6.74723 6.78023 6.90008 6.98165 6.98582 7.32198 7.52336 7.60983 7.67401 7.98071 7.98992 8.12252 8.35978 8.65052 8.86610 9.51678 10.96835 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041590 B = 0.003223 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.076809 B = 8685.724666 C = 8943.853160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.714 5.714 14 C 0.502 3.498 15 O -0.526 6.526 16 C 0.058 3.942 17 H 0.101 0.899 18 C -0.147 4.147 19 C -0.137 4.137 20 C 0.083 3.917 21 H 0.114 0.886 22 C 0.482 3.518 23 O -0.485 6.485 24 O -0.514 6.514 25 O -0.319 6.319 26 H 0.006 0.994 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.398 0.602 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 3.108 18.587 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.011 3.989 13 N -0.366 5.366 14 C 0.286 3.714 15 O -0.402 6.402 16 C -0.004 4.004 17 H 0.119 0.881 18 C -0.185 4.185 19 C -0.175 4.175 20 C 0.024 3.976 21 H 0.131 0.869 22 C 0.322 3.678 23 O -0.370 6.370 24 O -0.328 6.328 25 O -0.237 6.237 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.861 2.468 18.202 19.281 hybrid contribution 0.064 -0.404 -0.491 0.639 sum -5.797 2.064 17.711 18.750 Atomic orbital electron populations 1.21831 0.97736 0.99181 1.00074 1.18362 0.92812 0.92784 0.90512 1.21836 0.98678 0.98303 1.00077 1.21034 1.31409 1.12121 0.89866 0.92348 1.24872 0.94839 0.94919 0.98865 1.69804 1.36771 1.22773 1.23146 0.86516 0.78651 0.79790 0.82949 1.19732 1.21064 1.21047 1.21749 0.98308 0.95798 0.83094 1.46219 1.52908 1.31961 1.05560 1.20209 0.81523 0.85287 0.84412 1.90730 1.37148 1.25830 1.86499 1.22792 0.94071 0.97524 0.85973 0.88103 1.22987 0.93711 1.03103 0.98716 1.23086 0.96313 1.03124 0.94986 1.22486 0.89683 0.96730 0.88675 0.86851 1.22845 0.79602 0.83971 0.81424 1.90803 1.30039 1.40909 1.75258 1.84454 1.54503 1.58711 1.35093 1.89133 1.35530 1.79875 1.19137 0.97511 0.95433 0.89565 0.97499 0.95380 0.89560 0.93054 0.92639 0.92588 0.76709 0.88690 0.88840 0.88175 0.89614 0.72605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.24 9.35 55.43 0.52 -22.72 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.79 4.50 -4.05 -0.02 2.77 16 13 N -0.71 -12.22 4.93 -60.30 -0.30 -12.51 16 14 C 0.50 8.83 6.95 -10.98 -0.08 8.76 16 15 O -0.53 -11.93 16.53 -14.02 -0.23 -12.16 16 16 C 0.06 0.73 3.84 -27.31 -0.10 0.63 16 17 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.15 -1.34 6.61 -25.21 -0.17 -1.50 16 19 C -0.14 -1.14 6.57 -24.72 -0.16 -1.31 16 20 C 0.08 0.85 3.87 -26.82 -0.10 0.75 16 21 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.48 5.44 7.70 36.01 0.28 5.72 16 23 O -0.49 -7.80 17.33 -25.22 -0.44 -8.24 16 24 O -0.51 -3.68 13.42 -39.25 -0.53 -4.21 16 25 O -0.32 -4.80 10.03 -64.29 -0.64 -5.45 16 26 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 32 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 5.85 6.16 -40.82 -0.25 5.60 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.41 1.29 9.10 45.56 0.41 1.71 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -34.18 330.38 -6.78 -40.96 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.92 Total: 3.64 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.20 Total: 0.13 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.22 Total: -35.24 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.84 Total: -30.06 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.18 -6.78 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315915281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.880 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds