Wall clock time and date at job start Tue Mar 31 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 13 13 N 1.46496 * 109.47337 * 300.00145 * 12 2 1 14 14 C 1.34774 * 120.00339 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99971 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.86775 * 303.99001 * 16 14 13 18 18 C 1.54096 * 109.87933 * 64.99567 * 16 14 13 19 19 C 1.54810 * 104.18457 * 121.45664 * 18 16 14 20 20 C 1.55002 * 102.09393 * 20.88109 * 19 18 16 21 21 H 1.08998 * 110.61463 * 81.47566 * 20 19 18 22 22 C 1.50703 * 110.61653 * 204.31774 * 20 19 18 23 23 O 1.20824 * 119.99714 * 114.99894 * 22 20 19 24 24 O 1.34229 * 120.00228 * 294.99696 * 22 20 19 25 25 O 1.43747 * 109.87988 * 182.83507 * 16 14 13 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 35 35 H 0.97005 * 119.99865 * 0.02562 * 13 12 2 36 36 H 1.08997 * 110.49058 * 240.12772 * 18 16 14 37 37 H 1.08993 * 110.49018 * 2.65379 * 18 16 14 38 38 H 1.09001 * 110.90946 * 139.07619 * 19 18 16 39 39 H 1.09001 * 110.91021 * 262.65032 * 19 18 16 40 40 H 0.96703 * 117.00030 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 7 1.5518 -0.0307 2.4453 14 6 1.8770 -0.4915 3.6694 15 8 2.5735 -1.4781 3.7806 16 6 1.3742 0.2185 4.9000 17 1 1.6745 1.2660 4.8720 18 6 -0.1616 0.1155 4.9736 19 6 -0.4303 -0.5847 6.3279 20 6 0.8864 -0.3147 7.1000 21 1 0.8770 0.6837 7.5372 22 6 1.0994 -1.3576 8.1669 23 8 2.0368 -2.1161 8.0915 24 8 0.2477 -1.4437 9.2008 25 8 1.9020 -0.4128 6.0786 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 0.7093 1.1618 -3.4844 33 1 1.6768 -1.7489 1.2491 34 1 3.1300 -0.7216 1.2489 35 1 0.9937 0.7577 2.3564 36 1 -0.6116 1.1081 4.9616 37 1 -0.5436 -0.4857 4.1487 38 1 -1.2803 -0.1317 6.8382 39 1 -0.5876 -1.6543 6.1884 40 1 0.4257 -2.1282 9.8603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315915281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:12 Heat of formation + Delta-G solvation = -199.760012 kcal Electronic energy + Delta-G solvation = -23043.570436 eV Core-core repulsion = 19436.377747 eV Total energy + Delta-G solvation = -3607.192689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85907 -40.94596 -39.49384 -38.00775 -37.15002 -35.09677 -33.41740 -32.76560 -31.32450 -27.63081 -27.53431 -27.13690 -25.53696 -23.22131 -22.30089 -21.52208 -20.61960 -19.38870 -18.68659 -17.88624 -17.85668 -17.41121 -17.14826 -16.57206 -16.42896 -16.07745 -15.71552 -15.20772 -14.80549 -14.68187 -14.50626 -14.41239 -13.98272 -13.23287 -13.19951 -13.09130 -12.85383 -12.76807 -12.67616 -12.58482 -12.54911 -12.23535 -12.14668 -11.99087 -11.66890 -11.47343 -11.30311 -11.20863 -10.71767 -10.51736 -10.39723 -9.98566 -8.02908 -6.18051 1.06919 1.40442 1.44794 1.47815 1.54482 1.61042 2.19201 2.47067 2.99422 3.20771 3.39297 3.69175 3.78061 3.89835 4.01099 4.22112 4.37768 4.43975 4.50110 4.59594 4.72941 4.85182 4.95414 4.99755 5.02315 5.08154 5.12334 5.21474 5.35931 5.47155 5.57090 5.63224 5.68203 5.69815 6.18333 6.22978 6.44646 6.64713 6.85902 6.91858 7.29496 7.49675 8.95947 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.041590 B = 0.003223 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.076809 B = 8685.724666 C = 8943.853160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.700 5.700 14 C 0.497 3.503 15 O -0.587 6.587 16 C 0.062 3.938 17 H 0.139 0.861 18 C -0.141 4.141 19 C -0.130 4.130 20 C 0.075 3.925 21 H 0.158 0.842 22 C 0.486 3.514 23 O -0.548 6.548 24 O -0.495 6.495 25 O -0.366 6.366 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.414 0.586 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.063 0.937 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 5.200 20.118 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.570 4.570 5 H 0.058 0.942 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.024 3.976 13 N -0.354 5.354 14 C 0.283 3.717 15 O -0.467 6.467 16 C 0.002 3.998 17 H 0.156 0.844 18 C -0.179 4.179 19 C -0.168 4.168 20 C 0.017 3.983 21 H 0.175 0.825 22 C 0.329 3.671 23 O -0.437 6.437 24 O -0.310 6.310 25 O -0.285 6.285 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.252 0.748 36 H 0.160 0.840 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -7.970 4.602 19.761 21.799 hybrid contribution 0.676 -1.082 -0.886 1.554 sum -7.294 3.519 18.875 20.539 Atomic orbital electron populations 1.21667 0.96654 0.98709 1.00775 1.18352 0.93585 0.93053 0.89818 1.21684 0.97852 0.97684 1.00740 1.21315 1.31711 1.12140 0.91811 0.94173 1.25391 0.95139 0.95595 1.00764 1.69890 1.36919 1.23122 1.23569 0.85754 0.78173 0.78719 0.80431 1.20370 1.20581 1.20649 1.21276 0.96873 0.95092 0.84372 1.45962 1.52786 1.32051 1.04578 1.21287 0.80096 0.84532 0.85773 1.90703 1.39894 1.28733 1.87404 1.22950 0.96330 0.97801 0.82763 0.84355 1.23093 0.90728 1.05580 0.98459 1.23134 0.96648 1.02271 0.94709 1.22954 0.89306 0.98250 0.87763 0.82537 1.23263 0.78728 0.83165 0.81938 1.90788 1.32763 1.43377 1.76799 1.84415 1.52864 1.59178 1.34510 1.89092 1.38027 1.80687 1.20679 0.93689 0.96465 0.91827 0.93820 0.96570 0.91761 0.92963 0.94657 0.94810 0.74825 0.83981 0.90281 0.83980 0.91766 0.70500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 8.08 71.98 0.58 -4.50 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -28.12 8.01 25.60 0.21 -27.92 16 5 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 6 C 0.03 1.63 5.15 84.65 0.44 2.06 16 7 N -0.90 -46.88 9.35 21.45 0.20 -46.68 16 8 Si 0.94 42.60 29.54 68.60 2.03 44.62 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.31 4.50 86.38 0.39 6.70 16 13 N -0.70 -23.12 4.93 -463.08 -2.28 -25.40 16 14 C 0.50 17.20 6.95 87.66 0.61 17.81 16 15 O -0.59 -27.60 16.53 15.68 0.26 -27.34 16 16 C 0.06 1.41 3.84 30.22 0.12 1.52 16 17 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 18 C -0.14 -1.96 6.61 31.58 0.21 -1.75 16 19 C -0.13 -1.67 6.57 31.90 0.21 -1.47 16 20 C 0.08 1.32 3.87 30.53 0.12 1.43 16 21 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 22 C 0.49 10.33 7.70 71.24 0.55 10.88 16 23 O -0.55 -17.99 17.33 28.16 0.49 -17.50 16 24 O -0.50 -5.80 13.42 -51.41 -0.69 -6.49 16 25 O -0.37 -10.56 10.03 -121.19 -1.22 -11.77 16 26 H 0.04 1.50 6.86 -2.39 -0.02 1.49 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 3.01 6.07 -2.38 -0.01 2.99 16 29 H 0.04 1.50 6.86 -2.39 -0.02 1.48 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 32 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 10.84 6.16 -92.70 -0.57 10.27 16 36 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.37 7.69 -2.39 -0.02 1.35 16 38 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 1.11 8.05 -2.39 -0.02 1.09 16 40 H 0.43 1.78 9.10 -74.06 -0.67 1.11 16 Total: -1.00 -79.51 330.38 2.59 -76.92 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -0.17 Total: 11.15 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.98 Total: 2.49 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -2.08 Total: -72.08 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -1.16 Total: -63.10 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -79.51 2.59 -76.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315915281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.837 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds