Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47619 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00465 * 3 2 1 6 6 H 1.48509 * 109.46851 * 149.99955 * 3 2 1 7 7 C 1.37878 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00549 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.53124 * 109.52372 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.28148 * 182.37855 * 10 9 7 12 12 N 1.46844 * 109.52152 * 59.17731 * 11 10 9 13 13 C 1.46906 * 110.99887 * 174.16043 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00048 * 13 12 11 15 15 C 1.34000 * 124.92352 * 90.00048 * 14 13 12 16 16 C 1.46785 * 106.18401 * 179.97438 * 15 14 13 17 17 C 1.39401 * 134.36998 * 180.02562 * 16 15 14 18 18 C 1.36745 * 119.71576 * 179.97438 * 17 16 15 19 19 C 1.38737 * 120.41559 * 0.02562 * 18 17 16 20 20 C 1.37845 * 120.68739 * 359.97438 * 19 18 17 21 21 C 1.38942 * 119.81789 * 359.97438 * 20 19 18 22 22 O 1.34449 * 124.92320 * 269.69270 * 14 13 12 23 23 C 1.46850 * 111.19991 * 298.25708 * 12 11 10 24 24 C 1.53032 * 109.52098 * 61.74469 * 23 12 11 25 25 H 0.96999 * 119.99924 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.52672 * 300.12896 * 9 7 2 27 27 H 1.08997 * 109.50392 * 62.43277 * 10 9 7 28 28 H 1.09008 * 109.53016 * 302.33838 * 10 9 7 29 29 H 1.08995 * 109.46089 * 299.16330 * 11 10 9 30 30 H 1.09000 * 109.45256 * 179.18504 * 11 10 9 31 31 H 1.08993 * 109.47164 * 289.99991 * 13 12 11 32 32 H 1.08996 * 109.46920 * 50.00025 * 13 12 11 33 33 H 1.07996 * 126.90532 * 359.95774 * 15 14 13 34 34 H 1.07997 * 120.14653 * 359.95216 * 17 16 15 35 35 H 1.07995 * 119.79052 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.65609 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.08886 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.46314 * 181.76064 * 23 12 11 39 39 H 1.08998 * 109.46244 * 301.72632 * 23 12 11 40 40 H 1.09004 * 109.50441 * 180.87586 * 24 23 12 41 41 H 1.09002 * 109.53781 * 60.78566 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4750 -4.9852 -0.0605 12 7 0.6532 -5.0195 -1.2769 13 6 0.0068 -6.3287 -1.4388 14 6 -1.0111 -6.2526 -2.5475 15 6 -0.7588 -6.5044 -3.8392 16 6 -2.0285 -6.3102 -4.5496 17 6 -2.4263 -6.4149 -5.8815 18 6 -3.7255 -6.1592 -6.2230 19 6 -4.6484 -5.7963 -5.2528 20 6 -4.2734 -5.6877 -3.9308 21 6 -2.9586 -5.9441 -3.5623 22 8 -2.3055 -5.9280 -2.3831 23 6 -0.3406 -3.9383 -1.2771 24 6 0.3751 -2.5859 -1.2535 25 1 -0.4850 0.8400 -0.0004 26 1 0.6226 -2.5570 0.8882 27 1 2.8428 -3.6321 0.9102 28 1 2.8995 -3.5844 -0.8686 29 1 0.8315 -5.0705 0.8151 30 1 2.1804 -5.8160 -0.0752 31 1 0.7592 -7.0771 -1.6871 32 1 -0.4890 -6.6065 -0.5088 33 1 0.1885 -6.7921 -4.2708 34 1 -1.7114 -6.6964 -6.6405 35 1 -4.0349 -6.2396 -7.2546 36 1 -5.6713 -5.5967 -5.5363 37 1 -4.9998 -5.4040 -3.1836 38 1 -0.9540 -4.0090 -2.1754 39 1 -0.9756 -4.0286 -0.3959 40 1 -0.3628 -1.7838 -1.2379 41 1 0.9997 -2.4884 -2.1416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334260292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = 26.067874 kcal Electronic energy + Delta-G solvation = -22134.169074 eV Core-core repulsion = 18979.911032 eV Total energy + Delta-G solvation = -3154.258043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43617 -38.42484 -37.72069 -34.28141 -32.77698 -31.57298 -30.42609 -29.82102 -29.46049 -26.60766 -24.58470 -22.99123 -22.16030 -21.87861 -21.47939 -20.51062 -18.58515 -17.33076 -16.78149 -16.55651 -16.15233 -15.51908 -14.95483 -14.40226 -14.34786 -14.27840 -13.87154 -13.30571 -13.05822 -12.99414 -12.65070 -12.44988 -12.23288 -12.09621 -11.94246 -11.68644 -11.38344 -10.95333 -10.92818 -10.74873 -10.46315 -10.22798 -10.06885 -9.97542 -9.43605 -8.96955 -8.71593 -8.61797 -8.27719 -8.17689 -7.80920 -5.95052 -4.00639 0.89718 1.34681 2.38505 2.74663 3.33115 3.39720 3.42694 3.69934 4.35215 4.45367 4.48322 4.66624 4.87526 5.10968 5.17114 5.23505 5.24007 5.35127 5.44080 5.56994 5.66524 5.75694 5.83440 5.86402 6.07088 6.20439 6.20894 6.22504 6.29145 6.38184 6.46311 6.61322 6.61920 6.66944 6.84397 7.05435 7.11919 7.25977 7.40632 7.56120 7.61266 7.82295 8.05718 8.17095 8.49832 9.03084 9.63802 11.11192 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.003990 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.824599 B = 7015.426119 C = 7839.619194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.530 5.530 13 C 0.124 3.876 14 C 0.052 3.948 15 C -0.196 4.196 16 C -0.127 4.127 17 C -0.073 4.073 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.106 4.106 21 C 0.052 3.948 22 O -0.192 6.192 23 C 0.057 3.943 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.158 0.842 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.025 0.975 40 H 0.092 0.908 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -14.909 -8.681 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.256 5.256 13 C -0.003 4.003 14 C 0.005 3.995 15 C -0.216 4.216 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.118 4.118 20 C -0.124 4.124 21 C 0.005 3.995 22 O -0.094 6.094 23 C -0.070 4.070 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.176 0.824 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.111 0.889 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.159 -14.636 -8.795 18.153 hybrid contribution -0.088 0.827 0.519 0.981 sum -6.247 -13.809 -8.276 17.269 Atomic orbital electron populations 1.69880 1.05892 1.26313 1.51008 1.24973 0.94823 0.99028 0.95189 0.86634 0.79870 0.83652 0.78066 1.20726 1.21336 1.19971 1.21198 0.92875 0.90633 1.50196 0.92707 1.18695 0.92686 0.91815 0.93931 1.21680 0.98701 0.93490 1.00484 1.22167 0.95746 0.99751 0.89080 1.62318 1.23405 1.00910 1.38933 1.20789 0.91793 0.94602 0.93161 1.22198 0.81995 0.98711 0.96614 1.22178 0.97762 1.09619 0.92023 1.19993 0.93704 1.04497 0.94593 1.20272 0.96179 0.98873 0.93789 1.20735 0.93229 1.02203 0.99621 1.20876 0.99863 0.99599 0.91469 1.19961 0.91646 1.03875 0.96922 1.19645 0.94343 1.02210 0.83312 1.84020 1.20956 1.72951 1.31431 1.22346 0.92849 0.92948 0.98890 1.21661 1.00174 0.92832 0.99421 0.93095 0.96114 0.92920 0.92339 0.95407 0.92040 0.87817 0.93287 0.82417 0.85674 0.85584 0.85005 0.85163 0.92571 0.95709 0.88935 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.37 55.43 0.63 -25.17 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 11 C 0.06 1.05 5.42 -3.84 -0.02 1.03 16 12 N -0.53 -9.48 4.80 -236.12 -1.13 -10.61 16 13 C 0.12 1.79 5.78 -4.97 -0.03 1.76 16 14 C 0.05 0.81 4.92 -35.80 -0.18 0.63 16 15 C -0.20 -2.80 11.01 -37.62 -0.41 -3.21 16 16 C -0.13 -1.83 6.40 -105.16 -0.67 -2.50 16 17 C -0.07 -0.86 10.05 -39.69 -0.40 -1.26 16 18 C -0.14 -1.44 9.98 -39.94 -0.40 -1.83 16 19 C -0.10 -1.04 10.01 -39.54 -0.40 -1.44 16 20 C -0.11 -1.33 10.07 -39.46 -0.40 -1.73 16 21 C 0.05 0.80 7.42 -38.47 -0.29 0.52 16 22 O -0.19 -3.20 9.79 3.92 0.04 -3.16 16 23 C 0.06 1.18 4.97 -3.83 -0.02 1.16 16 24 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.06 1.17 6.03 -51.93 -0.31 0.86 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.52 6.18 -51.93 -0.32 2.20 16 41 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -30.28 331.07 -10.66 -40.94 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.09 Total: 0.25 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -4.07 Total: -23.71 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.50 Total: -35.79 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.28 -10.66 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334260292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.007 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds