Wall clock time and date at job start Tue Mar 31 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47420 * 270.00847 * 3 2 1 5 5 H 1.48506 * 109.46991 * 30.00349 * 3 2 1 6 6 H 1.48498 * 109.47368 * 150.00506 * 3 2 1 7 7 C 1.37881 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.45877 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31097 * 181.37135 * 10 9 7 12 12 N 1.46925 * 108.77717 * 305.37185 * 11 10 9 13 13 C 1.34784 * 120.62826 * 233.58665 * 12 11 10 14 14 O 1.21282 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00090 * 179.97438 * 13 12 11 16 16 H 1.09003 * 113.23188 * 47.51799 * 15 13 12 17 17 C 1.52884 * 113.99173 * 179.97438 * 15 13 12 18 18 C 1.50760 * 89.82787 * 113.97634 * 17 15 13 19 19 C 1.38236 * 149.34418 * 180.02562 * 18 17 15 20 20 C 1.38172 * 120.12888 * 180.02562 * 19 18 17 21 21 C 1.38239 * 119.74541 * 359.94775 * 20 19 18 22 22 C 1.37972 * 120.18135 * 0.02562 * 21 20 19 23 23 C 1.38365 * 90.24726 * 359.96995 * 18 17 15 24 24 C 1.46918 * 118.74057 * 53.85646 * 12 11 10 25 25 C 1.53043 * 109.44975 * 300.06636 * 9 7 2 26 26 H 0.97001 * 120.00113 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.45482 * 60.02887 * 9 7 2 28 28 H 1.09000 * 109.49503 * 61.42473 * 10 9 7 29 29 H 1.08999 * 109.50226 * 301.32348 * 10 9 7 30 30 H 1.09000 * 109.58981 * 185.58265 * 11 10 9 31 31 H 1.08997 * 109.70216 * 65.22870 * 11 10 9 32 32 H 1.09002 * 113.16581 * 358.72093 * 17 15 13 33 33 H 1.09001 * 113.16643 * 229.23049 * 17 15 13 34 34 H 1.08007 * 119.93382 * 359.95534 * 19 18 17 35 35 H 1.07997 * 120.12846 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.90738 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.84165 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.58555 * 65.93181 * 24 12 11 39 39 H 1.09010 * 109.58611 * 186.35295 * 24 12 11 40 40 H 1.09005 * 109.49403 * 298.57449 * 25 9 7 41 41 H 1.08996 * 109.49501 * 58.66968 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 -0.0364 12 7 0.5232 -5.0091 1.0812 13 6 0.5130 -6.0357 1.9546 14 8 1.2956 -6.9527 1.8217 15 6 -0.4707 -6.0441 3.0962 16 1 -1.4895 -5.8097 2.7876 17 6 -0.3625 -7.2717 4.0009 18 6 0.0924 -6.3897 5.1358 19 6 0.5020 -6.2587 6.4495 20 6 0.8168 -5.0127 6.9569 21 6 0.7216 -3.8976 6.1454 22 6 0.3134 -4.0271 4.8338 23 6 -0.0042 -5.2777 4.3181 24 6 -0.4230 -3.8944 1.2252 25 6 0.3705 -2.5793 1.2487 26 1 -0.4850 0.8400 0.0004 27 1 0.6244 -2.5567 -0.8906 28 1 2.8563 -3.6196 0.9001 29 1 2.8875 -3.5912 -0.8800 30 1 2.1751 -5.8175 0.0624 31 1 0.9366 -5.0734 -0.9792 32 1 0.4003 -7.9788 3.6749 33 1 -1.3230 -7.7516 4.1891 34 1 0.5750 -7.1320 7.0809 35 1 1.1364 -4.9104 7.9834 36 1 0.9666 -2.9224 6.5395 37 1 0.2414 -3.1523 4.2046 38 1 -1.1150 -3.8915 0.3831 39 1 -0.9783 -4.0045 2.1568 40 1 0.9985 -2.5466 2.1391 41 1 -0.3220 -1.7377 1.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334465233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:12 Heat of formation + Delta-G solvation = 20.239428 kcal Electronic energy + Delta-G solvation = -22672.838410 eV Core-core repulsion = 19518.327627 eV Total energy + Delta-G solvation = -3154.510783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98252 -39.01720 -36.88937 -35.14105 -33.53804 -31.39569 -30.70893 -30.04259 -27.70313 -26.38982 -25.02708 -22.99179 -22.36900 -21.81154 -20.58660 -19.53505 -18.19901 -17.25358 -16.65098 -16.23905 -15.68140 -15.14439 -14.81583 -14.56038 -14.28080 -13.91766 -13.20196 -13.11939 -12.94777 -12.85365 -12.63141 -12.46439 -12.25191 -12.06784 -11.81008 -11.51690 -11.31721 -10.97370 -10.93200 -10.65750 -10.41562 -10.35330 -10.14058 -9.75936 -9.53522 -9.20013 -8.97867 -8.75245 -8.49892 -8.40576 -8.03269 -6.06006 -4.11948 1.31288 1.45062 2.84906 3.26224 3.33462 3.37037 3.40142 3.81982 4.19291 4.38649 4.44818 4.53327 4.84579 5.08023 5.13538 5.22582 5.24088 5.56500 5.60728 5.67305 5.74758 5.78344 5.89308 5.92105 6.01765 6.05592 6.12754 6.15008 6.25135 6.42186 6.43060 6.55712 6.63318 6.76034 6.86692 7.00113 7.02493 7.12180 7.24503 7.63417 7.88073 7.89089 8.00636 8.37384 8.50159 8.91390 9.53314 10.99510 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.005107 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.462658 B = 5481.711109 C = 6482.498966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.594 5.594 13 C 0.530 3.470 14 O -0.554 6.554 15 C -0.071 4.071 16 H 0.121 0.879 17 C -0.055 4.055 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.085 4.085 23 C -0.116 4.116 24 C 0.101 3.899 25 C -0.122 4.122 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -10.048 9.584 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.325 5.325 13 C 0.317 3.683 14 O -0.433 6.433 15 C -0.092 4.092 16 H 0.139 0.861 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.021 4.021 25 C -0.160 4.160 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.299 -10.369 9.498 14.443 hybrid contribution 0.407 1.263 0.016 1.327 sum -2.892 -9.105 9.515 13.483 Atomic orbital electron populations 1.69828 1.05833 1.26470 1.50971 1.24943 0.94856 0.99009 0.95059 0.86631 0.79929 0.83541 0.78134 1.20697 1.21240 1.19985 1.21201 0.92949 0.90548 1.50251 0.92730 1.18635 0.92643 0.91732 0.93981 1.22004 0.98925 0.94200 1.00992 1.21719 0.91776 0.99794 0.87789 1.48187 1.35760 1.20953 1.27643 1.19855 0.84088 0.81989 0.82337 1.90626 1.41364 1.36560 1.74744 1.21365 0.99899 0.96130 0.91831 0.86134 1.21469 1.02510 0.96029 0.89181 1.21704 0.98776 0.97826 0.93987 1.20111 1.00553 0.97469 0.93423 1.21017 1.00290 0.92279 0.99688 1.20974 1.00415 0.98925 0.93548 1.20771 0.97453 0.96719 0.95308 1.21807 1.00970 0.94035 0.94820 1.22177 0.91574 0.87667 1.00706 1.22092 0.99939 0.94417 0.99580 0.92973 0.95447 0.92989 0.92113 0.90365 0.92087 0.87718 0.89095 0.86445 0.85698 0.85613 0.85612 0.91817 0.91415 0.94186 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 11.31 55.43 0.63 -23.43 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.67 16 11 C 0.11 2.04 6.43 -3.71 -0.02 2.02 16 12 N -0.59 -10.68 2.97 -172.51 -0.51 -11.20 16 13 C 0.53 9.37 7.26 -10.98 -0.08 9.29 16 14 O -0.55 -11.19 15.13 5.56 0.08 -11.11 16 15 C -0.07 -1.02 3.02 -92.54 -0.28 -1.30 16 16 H 0.12 1.45 7.41 -51.93 -0.38 1.07 16 17 C -0.05 -0.70 7.54 -31.54 -0.24 -0.93 16 18 C -0.12 -1.69 7.60 -104.55 -0.79 -2.48 16 19 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 20 C -0.11 -1.34 10.06 -39.61 -0.40 -1.74 16 21 C -0.12 -1.56 10.03 -39.68 -0.40 -1.95 16 22 C -0.08 -1.26 10.05 -39.41 -0.40 -1.65 16 23 C -0.12 -1.73 6.52 -107.50 -0.70 -2.43 16 24 C 0.10 1.77 6.33 -3.49 -0.02 1.75 16 25 C -0.12 -2.62 5.17 -26.39 -0.14 -2.76 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.45 7.04 -51.93 -0.37 1.08 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.13 1.93 7.61 -52.48 -0.40 1.53 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.04 5.68 -51.92 -0.30 0.75 16 40 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16 41 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -29.34 329.07 -10.31 -39.66 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.87 Total: 3.18 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -4.58 Total: -17.71 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.11 Total: -34.63 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.34 -10.31 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334465233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.895 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds