Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47420 * 270.00847 * 3 2 1 5 5 H 1.48506 * 109.46991 * 30.00349 * 3 2 1 6 6 H 1.48498 * 109.47368 * 150.00506 * 3 2 1 7 7 C 1.37881 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.45877 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31097 * 181.37135 * 10 9 7 12 12 N 1.46925 * 108.77717 * 305.37185 * 11 10 9 13 13 C 1.34784 * 120.62826 * 233.58665 * 12 11 10 14 14 O 1.21282 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00090 * 179.97438 * 13 12 11 16 16 H 1.09003 * 113.23188 * 47.51799 * 15 13 12 17 17 C 1.52884 * 113.99173 * 179.97438 * 15 13 12 18 18 C 1.50760 * 89.82787 * 113.97634 * 17 15 13 19 19 C 1.38236 * 149.34418 * 180.02562 * 18 17 15 20 20 C 1.38172 * 120.12888 * 180.02562 * 19 18 17 21 21 C 1.38239 * 119.74541 * 359.94775 * 20 19 18 22 22 C 1.37972 * 120.18135 * 0.02562 * 21 20 19 23 23 C 1.38365 * 90.24726 * 359.96995 * 18 17 15 24 24 C 1.46918 * 118.74057 * 53.85646 * 12 11 10 25 25 C 1.53043 * 109.44975 * 300.06636 * 9 7 2 26 26 H 0.97001 * 120.00113 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.45482 * 60.02887 * 9 7 2 28 28 H 1.09000 * 109.49503 * 61.42473 * 10 9 7 29 29 H 1.08999 * 109.50226 * 301.32348 * 10 9 7 30 30 H 1.09000 * 109.58981 * 185.58265 * 11 10 9 31 31 H 1.08997 * 109.70216 * 65.22870 * 11 10 9 32 32 H 1.09002 * 113.16581 * 358.72093 * 17 15 13 33 33 H 1.09001 * 113.16643 * 229.23049 * 17 15 13 34 34 H 1.08007 * 119.93382 * 359.95534 * 19 18 17 35 35 H 1.07997 * 120.12846 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.90738 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.84165 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.58555 * 65.93181 * 24 12 11 39 39 H 1.09010 * 109.58611 * 186.35295 * 24 12 11 40 40 H 1.09005 * 109.49403 * 298.57449 * 25 9 7 41 41 H 1.08996 * 109.49501 * 58.66968 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 -0.0364 12 7 0.5232 -5.0091 1.0812 13 6 0.5130 -6.0357 1.9546 14 8 1.2956 -6.9527 1.8217 15 6 -0.4707 -6.0441 3.0962 16 1 -1.4895 -5.8097 2.7876 17 6 -0.3625 -7.2717 4.0009 18 6 0.0924 -6.3897 5.1358 19 6 0.5020 -6.2587 6.4495 20 6 0.8168 -5.0127 6.9569 21 6 0.7216 -3.8976 6.1454 22 6 0.3134 -4.0271 4.8338 23 6 -0.0042 -5.2777 4.3181 24 6 -0.4230 -3.8944 1.2252 25 6 0.3705 -2.5793 1.2487 26 1 -0.4850 0.8400 0.0004 27 1 0.6244 -2.5567 -0.8906 28 1 2.8563 -3.6196 0.9001 29 1 2.8875 -3.5912 -0.8800 30 1 2.1751 -5.8175 0.0624 31 1 0.9366 -5.0734 -0.9792 32 1 0.4003 -7.9788 3.6749 33 1 -1.3230 -7.7516 4.1891 34 1 0.5750 -7.1320 7.0809 35 1 1.1364 -4.9104 7.9834 36 1 0.9666 -2.9224 6.5395 37 1 0.2414 -3.1523 4.2046 38 1 -1.1150 -3.8915 0.3831 39 1 -0.9783 -4.0045 2.1568 40 1 0.9985 -2.5466 2.1391 41 1 -0.3220 -1.7377 1.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334465233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = 6.322971 kcal Electronic energy + Delta-G solvation = -22673.441873 eV Core-core repulsion = 19518.327627 eV Total energy + Delta-G solvation = -3155.114246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13767 -40.34068 -38.45073 -36.20580 -35.35703 -33.12797 -31.94635 -31.48944 -28.88564 -27.97400 -26.33307 -24.60195 -23.89675 -22.99327 -21.78577 -21.00844 -19.60048 -18.75929 -18.11907 -17.67158 -17.05143 -16.52461 -16.21840 -16.07685 -15.47010 -15.23131 -14.86433 -14.59982 -14.53369 -14.06982 -13.91068 -13.80218 -13.53059 -13.39852 -13.13164 -12.92582 -12.82574 -12.76194 -12.46597 -12.16967 -11.96597 -11.92772 -11.50721 -11.41159 -11.04598 -11.02270 -10.77547 -10.40529 -9.76972 -9.59448 -9.52216 -8.08803 -6.21664 0.30580 0.44539 1.40144 1.42537 1.49202 1.51220 2.02751 2.43304 2.80437 3.15004 3.17991 3.42499 3.46874 3.60225 4.07693 4.18087 4.20136 4.24545 4.27243 4.33897 4.46272 4.54271 4.64942 4.69116 4.71576 4.79863 4.83753 4.94034 4.96714 5.00463 5.14221 5.17024 5.23505 5.40915 5.45935 5.51953 5.57677 5.63748 5.74843 5.97568 6.05644 6.11368 6.38197 6.44996 6.87044 7.08973 7.45973 8.94678 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.005107 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.462658 B = 5481.711109 C = 6482.498966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.598 5.598 13 C 0.528 3.472 14 O -0.581 6.581 15 C -0.073 4.073 16 H 0.145 0.855 17 C -0.045 4.045 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.108 4.108 23 C -0.142 4.142 24 C 0.114 3.886 25 C -0.110 4.110 26 H 0.262 0.738 27 H 0.006 0.994 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -10.886 11.101 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.329 5.329 13 C 0.317 3.683 14 O -0.462 6.462 15 C -0.093 4.093 16 H 0.162 0.838 17 C -0.082 4.082 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.008 4.008 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.818 -11.208 11.017 16.173 hybrid contribution 0.615 1.546 -0.421 1.716 sum -3.203 -9.662 10.596 14.693 Atomic orbital electron populations 1.69933 1.06729 1.27145 1.51150 1.25583 0.95664 1.01766 0.94791 0.85742 0.78750 0.80104 0.78155 1.20277 1.20678 1.19977 1.21516 0.92803 0.92281 1.50718 0.93702 1.18606 0.93007 0.91811 0.93825 1.21847 0.98358 0.94509 1.00412 1.21621 0.92007 0.98197 0.88833 1.48231 1.35695 1.21239 1.27751 1.20450 0.84170 0.81128 0.82538 1.90607 1.42666 1.37524 1.75436 1.21456 0.99909 0.97432 0.90509 0.83757 1.21445 1.03764 0.94979 0.88005 1.22000 0.98983 0.97484 0.94758 1.20525 0.99373 0.98748 0.93214 1.21425 0.98819 0.91519 1.00952 1.21251 1.00102 1.00392 0.93031 1.20845 0.99098 0.96363 0.96299 1.21950 1.02321 0.94518 0.95464 1.22020 0.90969 0.85468 1.02375 1.21827 0.99204 0.95929 0.97917 0.92875 0.97596 0.94495 0.91700 0.90254 0.90671 0.89039 0.85791 0.83673 0.82446 0.84163 0.87332 0.91017 0.88941 0.95555 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.76 11.31 21.45 0.24 -49.51 16 2 C 0.02 1.13 5.30 84.66 0.45 1.58 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -28.86 8.56 25.60 0.22 -28.64 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.05 2.21 2.06 -11.51 -0.02 2.19 16 10 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 11 C 0.12 4.23 6.43 86.36 0.56 4.78 16 12 N -0.60 -21.22 2.97 -818.09 -2.43 -23.65 16 13 C 0.53 18.23 7.26 87.65 0.64 18.87 16 14 O -0.58 -23.21 15.13 -3.03 -0.05 -23.25 16 15 C -0.07 -1.95 3.02 -12.04 -0.04 -1.99 16 16 H 0.14 3.12 7.41 -2.39 -0.02 3.10 16 17 C -0.05 -1.04 7.54 27.48 0.21 -0.84 16 18 C -0.13 -3.36 7.60 -19.82 -0.15 -3.51 16 19 C -0.10 -2.17 10.04 22.25 0.22 -1.95 16 20 C -0.11 -2.25 10.06 22.25 0.22 -2.02 16 21 C -0.13 -3.18 10.03 22.21 0.22 -2.96 16 22 C -0.11 -3.19 10.05 22.38 0.22 -2.96 16 23 C -0.14 -4.10 6.52 -21.73 -0.14 -4.24 16 24 C 0.11 3.95 6.33 86.51 0.55 4.49 16 25 C -0.11 -4.85 5.17 30.82 0.16 -4.69 16 26 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.08 2.90 7.01 -2.39 -0.02 2.89 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 2.39 7.04 -2.39 -0.02 2.38 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.11 3.46 7.61 -2.91 -0.02 3.44 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.09 2.76 5.68 -2.38 -0.01 2.75 16 40 H 0.03 1.19 7.70 -2.38 -0.02 1.17 16 41 H 0.08 3.96 6.03 -2.39 -0.01 3.94 16 Total: -1.00 -63.70 329.07 4.30 -59.40 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.02 Total: 18.75 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.48 Total: -26.44 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -2.18 Total: -73.16 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -63.70 4.30 -59.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334465233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.724 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds