Wall clock time and date at job start Tue Mar 31 2020 06:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48506 * 109.46781 * 274.98636 * 3 2 1 5 5 H 1.48497 * 109.47362 * 34.98240 * 3 2 1 6 6 H 1.48496 * 109.47387 * 154.98904 * 3 2 1 7 7 C 1.37876 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 189.58204 * 7 2 1 9 9 C 1.50702 * 119.99864 * 9.58625 * 7 2 1 10 10 C 1.53038 * 109.46368 * 185.44801 * 9 7 2 11 11 C 1.53191 * 109.31847 * 178.61239 * 10 9 7 12 12 N 1.46928 * 108.77332 * 54.63225 * 11 10 9 13 13 C 1.34770 * 120.62984 * 126.37267 * 12 11 10 14 14 O 1.21282 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00080 * 179.97438 * 13 12 11 16 16 H 1.08995 * 112.50848 * 309.67581 * 15 13 12 17 17 C 1.52883 * 113.22071 * 179.79723 * 15 13 12 18 18 C 1.51431 * 84.73160 * 244.54733 * 17 15 13 19 19 C 1.38954 * 145.52534 * 179.27210 * 18 17 15 20 20 C 1.37971 * 120.32585 * 180.59677 * 19 18 17 21 21 C 1.38246 * 120.17412 * 0.23736 * 20 19 18 22 22 C 1.38180 * 119.74850 * 0.02562 * 21 20 19 23 23 C 1.38237 * 120.12312 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73801 * 306.64393 * 12 11 10 25 25 C 1.52768 * 109.00752 * 53.31214 * 24 12 11 26 26 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.45984 * 305.42049 * 9 7 2 28 28 H 1.09004 * 109.49770 * 58.65409 * 10 9 7 29 29 H 1.09000 * 109.49597 * 298.56686 * 10 9 7 30 30 H 1.09002 * 109.58241 * 294.85206 * 11 10 9 31 31 H 1.08995 * 109.58589 * 174.42086 * 11 10 9 32 32 H 1.09002 * 113.99219 * 358.71314 * 17 15 13 33 33 H 1.09003 * 113.99058 * 130.66688 * 17 15 13 34 34 H 1.08003 * 119.83675 * 0.88266 * 19 18 17 35 35 H 1.07995 * 119.91250 * 180.25439 * 20 19 18 36 36 H 1.08006 * 120.12381 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.93328 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.58397 * 173.14265 * 24 12 11 39 39 H 1.08999 * 109.59128 * 293.56900 * 24 12 11 40 40 H 1.08997 * 109.56326 * 185.55190 * 25 24 12 41 41 H 1.08997 * 109.35745 * 65.49823 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3949 5 1 1.5033 2.6200 0.8027 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1562 9 6 1.2667 -2.4901 -0.2162 10 6 2.2326 -3.6632 -0.0346 11 6 1.4718 -4.9797 -0.2214 12 7 0.7933 -4.9529 -1.5244 13 6 0.9772 -5.9476 -2.4149 14 8 1.7088 -6.8762 -2.1443 15 6 0.2737 -5.9060 -3.7470 16 1 -0.7958 -5.7203 -3.6485 17 6 0.5962 -7.1067 -4.6367 18 6 1.2314 -6.0809 -5.5519 19 6 1.9176 -5.8773 -6.7429 20 6 2.2983 -4.6056 -7.1189 21 6 2.0036 -3.5242 -6.3096 22 6 1.3261 -3.7214 -5.1215 23 6 0.9451 -4.9953 -4.7434 24 6 -0.0847 -3.8180 -1.8404 25 6 0.6893 -2.5173 -1.6332 26 1 -0.4850 0.8401 -0.0004 27 1 0.4559 -2.5719 0.5077 28 1 2.6613 -3.6298 0.9670 29 1 3.0301 -3.5957 -0.7745 30 1 0.7335 -5.0909 0.5727 31 1 2.1725 -5.8140 -0.1914 32 1 1.3028 -7.8090 -4.1944 33 1 -0.2825 -7.5932 -5.0603 34 1 2.1500 -6.7181 -7.3796 35 1 2.8278 -4.4545 -8.0479 36 1 2.3024 -2.5291 -6.6046 37 1 1.0947 -2.8788 -4.4869 38 1 -0.4107 -3.8862 -2.8783 39 1 -0.9525 -3.8326 -1.1810 40 1 0.0194 -1.6683 -1.7694 41 1 1.5013 -2.4607 -2.3581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334465237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:15 Heat of formation + Delta-G solvation = 19.292683 kcal Electronic energy + Delta-G solvation = -22714.373650 eV Core-core repulsion = 19559.821813 eV Total energy + Delta-G solvation = -3154.551837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05455 -39.00351 -36.93163 -35.14892 -33.51039 -31.39660 -30.76042 -30.13262 -27.68225 -26.41927 -25.03947 -22.99562 -22.39634 -21.85541 -20.62111 -19.54865 -18.19880 -17.26859 -16.65849 -16.24946 -15.70040 -15.16284 -14.82045 -14.53120 -14.29617 -13.91476 -13.18156 -13.13589 -13.00966 -12.83200 -12.64745 -12.45088 -12.26215 -12.05445 -11.85783 -11.53642 -11.40547 -10.95903 -10.94714 -10.67260 -10.46475 -10.40528 -10.22123 -9.76069 -9.54720 -9.11584 -9.03293 -8.76450 -8.50694 -8.37955 -8.06036 -6.08505 -4.09799 1.31556 1.42210 2.85567 3.26344 3.34430 3.37716 3.40067 3.80144 4.17252 4.39767 4.42258 4.52149 4.81935 5.06560 5.13696 5.22062 5.23409 5.53403 5.56816 5.67649 5.71993 5.78097 5.87983 5.90550 6.01187 6.02331 6.12774 6.14390 6.22577 6.40990 6.42374 6.53603 6.59722 6.75301 6.85325 6.98830 7.01063 7.07612 7.15427 7.61088 7.85580 7.87155 7.92945 8.37260 8.48801 8.93779 9.54137 11.00207 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005217 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.671989 B = 5366.145333 C = 6394.919001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.594 5.594 13 C 0.527 3.473 14 O -0.554 6.554 15 C -0.064 4.064 16 H 0.115 0.885 17 C -0.060 4.060 18 C -0.121 4.121 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.119 4.119 24 C 0.102 3.898 25 C -0.117 4.117 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -9.705 -11.241 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.325 5.325 13 C 0.314 3.686 14 O -0.433 6.433 15 C -0.085 4.085 16 H 0.133 0.867 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.020 4.020 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.089 -10.042 -11.073 14.988 hybrid contribution 0.401 1.297 -0.058 1.359 sum -0.688 -8.745 -11.131 14.172 Atomic orbital electron populations 1.69948 1.05875 1.26553 1.50349 1.24936 0.94757 0.98978 0.94987 0.86683 0.80145 0.83833 0.77999 1.20729 1.21308 1.19913 1.21162 0.94123 0.90895 1.49052 0.92718 1.18643 0.94163 0.91813 0.92501 1.22004 0.99027 0.94254 1.00816 1.21736 0.96367 0.99849 0.83186 1.48159 1.46241 1.21627 1.16515 1.20021 0.81695 0.82065 0.84844 1.90624 1.39207 1.35094 1.78375 1.21307 1.00779 0.94606 0.91831 0.86720 1.21724 1.00582 0.95220 0.92132 1.22338 0.97992 0.96973 0.94789 1.20476 0.98926 0.97028 0.95811 1.20961 1.00332 0.92366 0.99805 1.21039 0.99074 0.99130 0.94398 1.20430 0.97198 0.95649 0.96328 1.21178 1.00332 0.93859 0.96532 1.21957 0.93044 0.87156 0.99853 1.21874 0.99133 0.94191 1.00379 0.93008 0.94712 0.91993 0.93075 0.92015 0.90331 0.87136 0.88549 0.86603 0.85887 0.85427 0.85460 0.91357 0.91737 0.89598 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 12.16 55.43 0.67 -23.59 16 2 C 0.06 1.73 5.19 -17.82 -0.09 1.64 16 3 Si 0.89 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.56 8.48 -34.44 -0.29 -13.85 16 8 H 0.05 1.46 7.77 -52.49 -0.41 1.05 16 9 C 0.05 1.11 1.93 -91.73 -0.18 0.93 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.11 2.03 6.43 -3.71 -0.02 2.00 16 12 N -0.59 -10.60 2.98 -173.03 -0.52 -11.12 16 13 C 0.53 9.21 7.20 -10.99 -0.08 9.13 16 14 O -0.55 -11.08 15.08 5.56 0.08 -10.99 16 15 C -0.06 -0.91 2.81 -96.59 -0.27 -1.18 16 16 H 0.12 1.37 7.56 -51.93 -0.39 0.98 16 17 C -0.06 -0.74 7.91 -27.58 -0.22 -0.96 16 18 C -0.12 -1.64 7.32 -107.59 -0.79 -2.43 16 19 C -0.10 -1.27 10.05 -39.41 -0.40 -1.66 16 20 C -0.12 -1.35 10.03 -39.68 -0.40 -1.75 16 21 C -0.12 -1.50 10.06 -39.60 -0.40 -1.90 16 22 C -0.08 -1.14 9.94 -39.60 -0.39 -1.53 16 23 C -0.12 -1.75 6.31 -104.55 -0.66 -2.41 16 24 C 0.10 1.77 6.24 -3.93 -0.02 1.75 16 25 C -0.12 -2.48 5.19 -26.83 -0.14 -2.61 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 32 H 0.11 1.49 7.02 -51.93 -0.36 1.13 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.90 7.33 -52.49 -0.38 1.52 16 38 H 0.07 1.04 5.36 -51.93 -0.28 0.76 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 2.00 6.87 -51.93 -0.36 1.64 16 41 H 0.04 0.91 7.41 -51.93 -0.39 0.53 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -29.56 329.08 -10.18 -39.75 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.87 Total: 2.83 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.49 Total: -17.49 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.16 Total: -34.71 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.56 -10.18 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334465237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.040 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds