Wall clock time and date at job start Tue Mar 31 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48506 * 109.46781 * 274.98636 * 3 2 1 5 5 H 1.48497 * 109.47362 * 34.98240 * 3 2 1 6 6 H 1.48496 * 109.47387 * 154.98904 * 3 2 1 7 7 C 1.37876 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 189.58204 * 7 2 1 9 9 C 1.50702 * 119.99864 * 9.58625 * 7 2 1 10 10 C 1.53038 * 109.46368 * 185.44801 * 9 7 2 11 11 C 1.53191 * 109.31847 * 178.61239 * 10 9 7 12 12 N 1.46928 * 108.77332 * 54.63225 * 11 10 9 13 13 C 1.34770 * 120.62984 * 126.37267 * 12 11 10 14 14 O 1.21282 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00080 * 179.97438 * 13 12 11 16 16 H 1.08995 * 112.50848 * 309.67581 * 15 13 12 17 17 C 1.52883 * 113.22071 * 179.79723 * 15 13 12 18 18 C 1.51431 * 84.73160 * 244.54733 * 17 15 13 19 19 C 1.38954 * 145.52534 * 179.27210 * 18 17 15 20 20 C 1.37971 * 120.32585 * 180.59677 * 19 18 17 21 21 C 1.38246 * 120.17412 * 0.23736 * 20 19 18 22 22 C 1.38180 * 119.74850 * 0.02562 * 21 20 19 23 23 C 1.38237 * 120.12312 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73801 * 306.64393 * 12 11 10 25 25 C 1.52768 * 109.00752 * 53.31214 * 24 12 11 26 26 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.45984 * 305.42049 * 9 7 2 28 28 H 1.09004 * 109.49770 * 58.65409 * 10 9 7 29 29 H 1.09000 * 109.49597 * 298.56686 * 10 9 7 30 30 H 1.09002 * 109.58241 * 294.85206 * 11 10 9 31 31 H 1.08995 * 109.58589 * 174.42086 * 11 10 9 32 32 H 1.09002 * 113.99219 * 358.71314 * 17 15 13 33 33 H 1.09003 * 113.99058 * 130.66688 * 17 15 13 34 34 H 1.08003 * 119.83675 * 0.88266 * 19 18 17 35 35 H 1.07995 * 119.91250 * 180.25439 * 20 19 18 36 36 H 1.08006 * 120.12381 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.93328 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.58397 * 173.14265 * 24 12 11 39 39 H 1.08999 * 109.59128 * 293.56900 * 24 12 11 40 40 H 1.08997 * 109.56326 * 185.55190 * 25 24 12 41 41 H 1.08997 * 109.35745 * 65.49823 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3949 5 1 1.5033 2.6200 0.8027 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1562 9 6 1.2667 -2.4901 -0.2162 10 6 2.2326 -3.6632 -0.0346 11 6 1.4718 -4.9797 -0.2214 12 7 0.7933 -4.9529 -1.5244 13 6 0.9772 -5.9476 -2.4149 14 8 1.7088 -6.8762 -2.1443 15 6 0.2737 -5.9060 -3.7470 16 1 -0.7958 -5.7203 -3.6485 17 6 0.5962 -7.1067 -4.6367 18 6 1.2314 -6.0809 -5.5519 19 6 1.9176 -5.8773 -6.7429 20 6 2.2983 -4.6056 -7.1189 21 6 2.0036 -3.5242 -6.3096 22 6 1.3261 -3.7214 -5.1215 23 6 0.9451 -4.9953 -4.7434 24 6 -0.0847 -3.8180 -1.8404 25 6 0.6893 -2.5173 -1.6332 26 1 -0.4850 0.8401 -0.0004 27 1 0.4559 -2.5719 0.5077 28 1 2.6613 -3.6298 0.9670 29 1 3.0301 -3.5957 -0.7745 30 1 0.7335 -5.0909 0.5727 31 1 2.1725 -5.8140 -0.1914 32 1 1.3028 -7.8090 -4.1944 33 1 -0.2825 -7.5932 -5.0603 34 1 2.1500 -6.7181 -7.3796 35 1 2.8278 -4.4545 -8.0479 36 1 2.3024 -2.5291 -6.6046 37 1 1.0947 -2.8788 -4.4869 38 1 -0.4107 -3.8862 -2.8783 39 1 -0.9525 -3.8326 -1.1810 40 1 0.0194 -1.6683 -1.7694 41 1 1.5013 -2.4607 -2.3581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334465237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:14 Heat of formation + Delta-G solvation = 5.074733 kcal Electronic energy + Delta-G solvation = -22714.990187 eV Core-core repulsion = 19559.821813 eV Total energy + Delta-G solvation = -3155.168374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19635 -40.31141 -38.47704 -36.19918 -35.33179 -33.13238 -32.05823 -31.48982 -28.84222 -27.98850 -26.34526 -24.59547 -23.91447 -23.04155 -21.79121 -21.01681 -19.57998 -18.75823 -18.14063 -17.66812 -17.05579 -16.51054 -16.20977 -16.06627 -15.48052 -15.21917 -14.85990 -14.60987 -14.51646 -14.07004 -13.91121 -13.78056 -13.54268 -13.33676 -13.24679 -12.92466 -12.82825 -12.76623 -12.50414 -12.20268 -12.01300 -11.90359 -11.51254 -11.50946 -11.04910 -10.92598 -10.78739 -10.41395 -9.76660 -9.60116 -9.51414 -8.13106 -6.20592 0.32969 0.43199 1.39395 1.42462 1.50725 1.51497 2.03027 2.43442 2.80659 3.13847 3.17134 3.43156 3.49796 3.57150 4.06676 4.18642 4.21208 4.23907 4.26391 4.33174 4.43292 4.54173 4.64765 4.67615 4.70161 4.82326 4.83596 4.92839 4.96631 5.02806 5.14386 5.16971 5.22737 5.34438 5.46765 5.49108 5.57913 5.64700 5.74890 5.95608 6.00844 6.06016 6.37067 6.44509 6.88625 7.09087 7.45863 8.94547 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005217 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.671989 B = 5366.145333 C = 6394.919001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.598 5.598 13 C 0.524 3.476 14 O -0.581 6.581 15 C -0.065 4.065 16 H 0.138 0.862 17 C -0.049 4.049 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.145 4.145 24 C 0.115 3.885 25 C -0.105 4.105 26 H 0.262 0.738 27 H 0.009 0.991 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -10.443 -13.044 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.329 5.329 13 C 0.313 3.687 14 O -0.462 6.462 15 C -0.085 4.085 16 H 0.156 0.844 17 C -0.086 4.086 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.118 4.118 23 C -0.145 4.145 24 C -0.007 4.007 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.169 -10.782 -12.880 16.838 hybrid contribution 0.479 1.541 0.493 1.688 sum -0.690 -9.241 -12.387 15.469 Atomic orbital electron populations 1.70036 1.06881 1.27263 1.50836 1.25567 0.95511 1.01755 0.94732 0.85790 0.78927 0.80313 0.78118 1.20148 1.20907 1.19834 1.21475 0.93924 0.92608 1.49346 0.93703 1.18603 0.93741 0.91876 0.93109 1.21848 0.98227 0.94524 1.00521 1.21624 0.96595 0.98281 0.84186 1.48209 1.46289 1.21936 1.16495 1.20640 0.81203 0.81182 0.85625 1.90606 1.40423 1.36065 1.79098 1.21423 1.01589 0.95796 0.89725 0.84420 1.21740 1.01462 0.94241 0.91112 1.22592 0.98291 0.96825 0.95349 1.20859 0.97997 0.98179 0.95616 1.21352 0.99468 0.91737 1.00510 1.21321 0.98656 1.00538 0.93953 1.20518 0.98619 0.95400 0.97297 1.21309 1.01564 0.94323 0.97335 1.21806 0.92308 0.85070 1.01565 1.21614 0.98601 0.95530 0.98586 0.92897 0.97235 0.91815 0.94326 0.90813 0.90180 0.88407 0.85178 0.84014 0.82797 0.83892 0.86946 0.88826 0.91167 0.91945 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.45 12.16 21.45 0.26 -50.19 16 2 C 0.02 1.29 5.19 84.65 0.44 1.72 16 3 Si 0.94 42.70 29.55 68.60 2.03 44.73 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -28.87 8.48 25.60 0.22 -28.66 16 8 H 0.04 2.44 7.77 -2.91 -0.02 2.42 16 9 C 0.05 2.17 1.93 -11.51 -0.02 2.15 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 11 C 0.12 4.21 6.43 86.36 0.56 4.77 16 12 N -0.60 -21.03 2.98 -819.73 -2.44 -23.47 16 13 C 0.52 17.85 7.20 87.66 0.63 18.48 16 14 O -0.58 -22.87 15.08 -3.03 -0.05 -22.92 16 15 C -0.06 -1.71 2.81 -14.66 -0.04 -1.75 16 16 H 0.14 2.93 7.56 -2.39 -0.02 2.91 16 17 C -0.05 -1.09 7.91 30.04 0.24 -0.85 16 18 C -0.13 -3.26 7.32 -21.79 -0.16 -3.42 16 19 C -0.11 -2.33 10.05 22.38 0.22 -2.11 16 20 C -0.11 -2.31 10.03 22.21 0.22 -2.08 16 21 C -0.13 -3.03 10.06 22.26 0.22 -2.81 16 22 C -0.10 -2.88 9.94 22.26 0.22 -2.65 16 23 C -0.14 -4.09 6.31 -19.82 -0.12 -4.21 16 24 C 0.11 3.94 6.24 86.22 0.54 4.47 16 25 C -0.10 -4.51 5.19 30.53 0.16 -4.35 16 26 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.01 0.50 8.09 -2.38 -0.02 0.48 16 28 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 2.92 7.00 -2.39 -0.02 2.90 16 32 H 0.10 2.48 7.02 -2.39 -0.02 2.46 16 33 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.11 3.44 7.33 -2.91 -0.02 3.42 16 38 H 0.09 2.76 5.36 -2.39 -0.01 2.74 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 2.98 6.87 -2.39 -0.02 2.97 16 41 H 0.03 1.49 7.41 -2.39 -0.02 1.47 16 Total: -1.00 -63.98 329.08 4.31 -59.67 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.02 Total: 18.03 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.48 Total: -25.85 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.18 Total: -73.66 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -63.98 4.31 -59.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334465237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.746 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds