Wall clock time and date at job start Tue Mar 31 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48497 * 109.46978 * 269.99879 * 3 2 1 5 5 H 1.48501 * 109.46964 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47042 * 149.99857 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.33993 * 126.90581 * 259.68642 * 14 13 12 16 16 O 1.34456 * 110.15189 * 179.89007 * 15 14 13 17 17 C 1.34804 * 110.88796 * 0.39140 * 16 15 14 18 18 C 1.38944 * 133.49248 * 179.82006 * 17 16 15 19 19 C 1.37854 * 119.81479 * 180.02562 * 18 17 16 20 20 C 1.38733 * 120.68782 * 359.95978 * 19 18 17 21 21 C 1.36741 * 120.41839 * 359.97438 * 20 19 18 22 22 C 1.39409 * 119.71504 * 0.02562 * 21 20 19 23 23 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 24 24 C 1.53041 * 109.51486 * 61.75514 * 23 12 11 25 25 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 27 27 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 28 28 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 29 29 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 30 30 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 31 31 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 32 32 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 33 33 H 1.07999 * 124.92722 * 0.02562 * 15 14 13 34 34 H 1.08002 * 120.08971 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.65329 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.79257 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.14216 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.46836 * 301.74653 * 23 12 11 39 39 H 1.08995 * 109.45748 * 181.76188 * 23 12 11 40 40 H 1.08996 * 109.50341 * 180.87808 * 24 23 12 41 41 H 1.09004 * 109.53393 * 60.77542 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3374 -6.1178 -2.4137 16 8 -2.9234 -6.0844 -3.6234 17 6 -2.0070 -6.2042 -4.6048 18 6 -2.0890 -6.2313 -5.9916 19 6 -0.9418 -6.3696 -6.7434 20 6 0.2975 -6.4816 -6.1300 21 6 0.4001 -6.4558 -4.7667 22 6 -0.7490 -6.3167 -3.9897 23 6 -0.3407 -3.9383 -1.2761 24 6 0.3751 -2.5858 -1.2525 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 0.8889 27 1 2.8426 -3.6321 0.9114 28 1 2.8994 -3.5846 -0.8674 29 1 2.1801 -5.8162 -0.0739 30 1 0.8312 -5.0704 0.8161 31 1 0.7593 -7.0770 -1.6864 32 1 -0.4892 -6.6064 -0.5081 33 1 -2.8600 -6.0445 -1.4714 34 1 -3.0488 -6.1442 -6.4791 35 1 -1.0086 -6.3908 -7.8211 36 1 1.1870 -6.5889 -6.7331 37 1 1.3672 -6.5429 -4.2939 38 1 -0.9757 -4.0285 -0.3948 39 1 -0.9539 -4.0090 -2.1744 40 1 -0.3629 -1.7838 -1.2369 41 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334889799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:25 Heat of formation + Delta-G solvation = 26.308979 kcal Electronic energy + Delta-G solvation = -22347.416333 eV Core-core repulsion = 19193.168745 eV Total energy + Delta-G solvation = -3154.247588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41069 -38.25610 -37.80383 -34.57633 -32.74142 -31.04833 -30.32157 -29.78608 -29.25322 -26.68467 -24.38358 -23.24732 -22.32236 -22.02230 -21.46085 -19.71885 -18.55950 -17.24239 -16.89181 -16.39335 -16.07489 -15.71642 -15.06904 -14.39957 -14.28262 -14.20644 -13.84036 -13.60854 -13.09564 -12.77458 -12.56381 -12.37817 -12.24061 -12.11052 -11.70805 -11.51272 -11.41715 -10.92061 -10.84499 -10.71148 -10.42811 -10.19188 -9.95542 -9.86024 -9.39930 -8.93245 -8.67706 -8.59229 -8.26529 -8.10825 -7.68890 -5.94349 -3.99524 0.96661 1.40590 2.37369 2.85655 3.33386 3.39924 3.43056 3.76208 4.47175 4.48978 4.57484 4.64986 4.95195 5.01287 5.16569 5.35983 5.36795 5.44772 5.54115 5.66137 5.68043 5.76740 5.90067 5.99957 6.14604 6.23279 6.27986 6.31229 6.35006 6.46320 6.51516 6.65566 6.66094 6.68147 6.87794 7.10284 7.18282 7.22781 7.47699 7.64305 7.71536 7.86219 8.08303 8.19586 8.51638 9.04141 9.64733 11.11863 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.004175 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.370003 B = 6705.646683 C = 7020.515130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.529 5.529 13 C 0.123 3.877 14 C -0.158 4.158 15 C 0.004 3.996 16 O -0.195 6.195 17 C 0.047 3.953 18 C -0.112 4.112 19 C -0.097 4.097 20 C -0.142 4.142 21 C -0.057 4.057 22 C -0.110 4.110 23 C 0.057 3.943 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.204 0.796 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -15.234 -8.648 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.005 4.005 14 C -0.160 4.160 15 C -0.061 4.061 16 O -0.096 6.096 17 C 0.000 4.000 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.160 4.160 21 C -0.075 4.075 22 C -0.111 4.111 23 C -0.070 4.070 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.221 0.779 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.598 -15.002 -9.082 17.902 hybrid contribution -0.051 0.888 0.811 1.204 sum -3.649 -14.114 -8.270 16.761 Atomic orbital electron populations 1.69879 1.05879 1.26251 1.51140 1.24965 0.94821 0.98982 0.95225 0.86644 0.79887 0.83698 0.78061 1.20741 1.21340 1.19984 1.21213 0.92865 0.90693 1.50052 0.92777 1.18686 0.92697 0.91750 0.93945 1.21671 0.98695 0.93694 1.00282 1.22134 0.95792 0.99393 0.89397 1.62132 1.23529 1.01490 1.38297 1.20421 0.93769 0.93304 0.92998 1.21006 0.94144 1.07599 0.93228 1.23757 0.92629 1.02819 0.86942 1.83993 1.35925 1.75897 1.13759 1.19661 0.87048 1.02995 0.90306 1.19876 0.99798 1.05340 0.88025 1.20879 0.91543 0.99504 0.99582 1.20761 0.97743 1.03027 0.94460 1.20350 0.97336 0.96734 0.93043 1.19740 0.93855 1.04911 0.92620 1.22309 0.93199 0.92927 0.98537 1.21647 1.00139 0.93045 0.99291 0.93140 0.96205 0.93164 0.92488 0.92394 0.95764 0.90305 0.94407 0.77931 0.85390 0.85116 0.85558 0.85297 0.96267 0.92417 0.89092 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 11.37 55.43 0.63 -25.11 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.17 8.57 -34.44 -0.29 -14.47 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 11 C 0.06 1.07 5.43 -3.83 -0.02 1.05 16 12 N -0.53 -9.47 4.80 -236.11 -1.13 -10.60 16 13 C 0.12 1.78 5.83 -4.97 -0.03 1.75 16 14 C -0.16 -2.32 4.06 -102.66 -0.42 -2.74 16 15 C 0.00 0.06 11.07 29.24 0.32 0.38 16 16 O -0.19 -2.85 10.58 3.90 0.04 -2.81 16 17 C 0.05 0.69 7.42 -38.47 -0.29 0.40 16 18 C -0.11 -1.35 10.07 -39.46 -0.40 -1.74 16 19 C -0.10 -1.03 10.01 -39.54 -0.40 -1.42 16 20 C -0.14 -1.60 9.98 -39.94 -0.40 -2.00 16 21 C -0.06 -0.76 10.05 -39.69 -0.40 -1.16 16 22 C -0.11 -1.65 6.38 -105.16 -0.67 -2.32 16 23 C 0.06 1.16 4.95 -3.83 -0.02 1.14 16 24 C -0.10 -2.50 5.12 -26.65 -0.14 -2.63 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 1.15 6.04 -51.93 -0.31 0.84 16 40 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 41 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -30.30 331.09 -10.16 -40.46 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.09 Total: 0.08 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.58 Total: -23.52 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.50 Total: -35.71 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.30 -10.16 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334889799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.766 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds