Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48497 * 109.46978 * 269.99879 * 3 2 1 5 5 H 1.48501 * 109.46964 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47042 * 149.99857 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.33993 * 126.90581 * 259.68642 * 14 13 12 16 16 O 1.34456 * 110.15189 * 179.89007 * 15 14 13 17 17 C 1.34804 * 110.88796 * 0.39140 * 16 15 14 18 18 C 1.38944 * 133.49248 * 179.82006 * 17 16 15 19 19 C 1.37854 * 119.81479 * 180.02562 * 18 17 16 20 20 C 1.38733 * 120.68782 * 359.95978 * 19 18 17 21 21 C 1.36741 * 120.41839 * 359.97438 * 20 19 18 22 22 C 1.39409 * 119.71504 * 0.02562 * 21 20 19 23 23 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 24 24 C 1.53041 * 109.51486 * 61.75514 * 23 12 11 25 25 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 27 27 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 28 28 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 29 29 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 30 30 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 31 31 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 32 32 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 33 33 H 1.07999 * 124.92722 * 0.02562 * 15 14 13 34 34 H 1.08002 * 120.08971 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.65329 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.79257 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.14216 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.46836 * 301.74653 * 23 12 11 39 39 H 1.08995 * 109.45748 * 181.76188 * 23 12 11 40 40 H 1.08996 * 109.50341 * 180.87808 * 24 23 12 41 41 H 1.09004 * 109.53393 * 60.77542 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3374 -6.1178 -2.4137 16 8 -2.9234 -6.0844 -3.6234 17 6 -2.0070 -6.2042 -4.6048 18 6 -2.0890 -6.2313 -5.9916 19 6 -0.9418 -6.3696 -6.7434 20 6 0.2975 -6.4816 -6.1300 21 6 0.4001 -6.4558 -4.7667 22 6 -0.7490 -6.3167 -3.9897 23 6 -0.3407 -3.9383 -1.2761 24 6 0.3751 -2.5858 -1.2525 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 0.8889 27 1 2.8426 -3.6321 0.9114 28 1 2.8994 -3.5846 -0.8674 29 1 2.1801 -5.8162 -0.0739 30 1 0.8312 -5.0704 0.8161 31 1 0.7593 -7.0770 -1.6864 32 1 -0.4892 -6.6064 -0.5081 33 1 -2.8600 -6.0445 -1.4714 34 1 -3.0488 -6.1442 -6.4791 35 1 -1.0086 -6.3908 -7.8211 36 1 1.1870 -6.5889 -6.7331 37 1 1.3672 -6.5429 -4.2939 38 1 -0.9757 -4.0285 -0.3948 39 1 -0.9539 -4.0090 -2.1744 40 1 -0.3629 -1.7838 -1.2369 41 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334889799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = 9.541932 kcal Electronic energy + Delta-G solvation = -22348.143406 eV Core-core repulsion = 19193.168745 eV Total energy + Delta-G solvation = -3154.974661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.42291 -39.81782 -38.72392 -36.19954 -34.31580 -32.62180 -31.48222 -31.28681 -30.33020 -28.29989 -26.07033 -24.21232 -23.77418 -23.30049 -23.02076 -20.82605 -20.32235 -18.45817 -18.20311 -17.91173 -17.29028 -16.72919 -16.59641 -16.18035 -15.67611 -15.34342 -14.92530 -14.82258 -14.66008 -14.35268 -14.18133 -13.93262 -13.33443 -13.18091 -13.09996 -12.93362 -12.83082 -12.69132 -12.48711 -12.26547 -12.00712 -11.86535 -11.75254 -11.35273 -10.96811 -10.76935 -10.62771 -10.37770 -9.55582 -9.22992 -8.98557 -8.08175 -6.21471 0.01807 0.44767 1.34241 1.40266 1.41025 1.51126 1.89232 2.43498 2.80894 3.16670 3.20168 3.56653 3.63103 3.97574 4.13794 4.18501 4.23406 4.32744 4.40545 4.45100 4.51235 4.57321 4.65304 4.69253 4.74182 4.80205 4.89995 4.98103 5.04778 5.11791 5.24086 5.31917 5.33296 5.39229 5.50921 5.57234 5.58759 5.62408 5.76285 5.99864 6.02399 6.22088 6.29191 6.35155 6.40839 6.90478 7.46328 8.96409 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.004175 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.370003 B = 6705.646683 C = 7020.515130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.128 3.872 14 C -0.180 4.180 15 C 0.005 3.995 16 O -0.206 6.206 17 C 0.018 3.982 18 C -0.120 4.120 19 C -0.092 4.092 20 C -0.138 4.138 21 C -0.079 4.079 22 C -0.135 4.135 23 C 0.077 3.923 24 C -0.093 4.093 25 H 0.259 0.741 26 H -0.010 1.010 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.229 0.771 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.017 0.983 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -16.368 -9.673 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.262 5.262 13 C 0.001 3.999 14 C -0.181 4.181 15 C -0.060 4.060 16 O -0.107 6.107 17 C -0.028 4.028 18 C -0.138 4.138 19 C -0.109 4.109 20 C -0.156 4.156 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.051 4.051 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.008 0.992 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.988 -16.155 -10.109 19.290 hybrid contribution -0.237 1.223 1.058 1.634 sum -3.224 -14.933 -9.051 17.757 Atomic orbital electron populations 1.70023 1.07195 1.26984 1.51640 1.25746 0.95661 1.02370 0.94878 0.85646 0.78855 0.79553 0.78157 1.20329 1.20871 1.19148 1.21608 0.93012 0.92309 1.50198 0.93066 1.18659 0.93173 0.92757 0.92818 1.21536 0.97925 0.94020 1.00217 1.22076 0.96136 0.98409 0.89484 1.62033 1.23314 1.02511 1.38390 1.20445 0.94271 0.91372 0.93780 1.21119 0.94639 1.09028 0.93361 1.24282 0.92731 1.01552 0.87474 1.83973 1.36401 1.76128 1.14231 1.20130 0.87049 1.04362 0.91300 1.20316 1.01452 1.04790 0.87273 1.21349 0.90652 0.97616 1.01330 1.21165 0.99240 1.01296 0.93933 1.20557 0.97034 0.98014 0.94141 1.20032 0.94639 1.05828 0.93070 1.21944 0.93068 0.91670 0.98430 1.21401 0.99042 0.94742 0.97994 0.93161 0.99161 0.92558 0.93234 0.88972 0.95524 0.88714 0.92727 0.75443 0.83391 0.81507 0.82856 0.85230 0.96509 0.92335 0.92460 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 11.37 21.45 0.24 -54.17 16 2 C 0.01 0.66 5.31 84.66 0.45 1.11 16 3 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -30.26 8.57 25.60 0.22 -30.04 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.29 2.16 -11.46 -0.02 2.27 16 10 C -0.10 -4.15 5.32 30.65 0.16 -3.99 16 11 C 0.07 2.25 5.43 86.33 0.47 2.71 16 12 N -0.54 -18.61 4.80 -900.91 -4.32 -22.93 16 13 C 0.13 3.49 5.83 85.56 0.50 3.99 16 14 C -0.18 -5.13 4.06 -18.59 -0.08 -5.20 16 15 C 0.00 0.13 11.07 66.85 0.74 0.87 16 16 O -0.21 -5.97 10.58 -8.95 -0.09 -6.07 16 17 C 0.02 0.52 7.42 22.99 0.17 0.69 16 18 C -0.12 -2.70 10.07 22.35 0.23 -2.48 16 19 C -0.09 -1.70 10.01 22.30 0.22 -1.48 16 20 C -0.14 -2.83 9.98 22.04 0.22 -2.61 16 21 C -0.08 -2.06 10.05 22.20 0.22 -1.84 16 22 C -0.13 -3.97 6.38 -20.21 -0.13 -4.10 16 23 C 0.08 3.11 4.95 86.33 0.43 3.53 16 24 C -0.09 -4.68 5.12 30.65 0.16 -4.52 16 25 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.54 8.12 -2.39 -0.02 2.52 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.23 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.06 2.36 6.04 -2.39 -0.01 2.35 16 40 H 0.06 3.24 6.17 -2.39 -0.01 3.22 16 41 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -67.16 331.09 2.81 -64.34 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.01 Total: 13.25 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.96 Total: -41.07 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.08 Total: -77.10 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.09 Total: -6.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.16 2.81 -64.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334889799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.886 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds