Wall clock time and date at job start Tue Mar 31 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00268 * 2 1 4 4 H 1.48510 * 109.47054 * 274.99197 * 3 2 1 5 5 H 1.48498 * 109.47050 * 34.98954 * 3 2 1 6 6 H 1.48496 * 109.47241 * 154.99259 * 3 2 1 7 7 C 1.37882 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99629 * 189.55085 * 7 2 1 9 9 C 1.50693 * 120.00487 * 9.55538 * 7 2 1 10 10 C 1.53117 * 109.52230 * 185.43237 * 9 7 2 11 11 C 1.53038 * 109.27630 * 182.37762 * 10 9 7 12 12 N 1.46843 * 109.52862 * 59.17603 * 11 10 9 13 13 C 1.46903 * 111.00274 * 174.16382 * 12 11 10 14 14 C 1.50695 * 109.46970 * 170.00212 * 13 12 11 15 15 C 1.37863 * 120.01960 * 259.99331 * 14 13 12 16 16 C 1.38714 * 120.69388 * 180.02562 * 15 14 13 17 17 C 1.37758 * 120.27500 * 0.02562 * 16 15 14 18 18 C 1.39378 * 119.60183 * 0.25376 * 17 16 15 19 19 C 1.46786 * 134.34433 * 180.41674 * 18 17 16 20 20 C 1.33990 * 106.18336 * 179.49418 * 19 18 17 21 21 O 1.34447 * 110.16404 * 359.78472 * 20 19 18 22 22 C 1.34832 * 110.89113 * 359.97438 * 21 20 19 23 23 C 1.46848 * 111.19666 * 298.26041 * 12 11 10 24 24 C 1.53040 * 109.52425 * 61.73927 * 23 12 11 25 25 H 0.96997 * 119.99472 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51905 * 305.55183 * 9 7 2 27 27 H 1.08992 * 109.50893 * 62.43388 * 10 9 7 28 28 H 1.08999 * 109.53436 * 302.33103 * 10 9 7 29 29 H 1.09002 * 109.46227 * 299.15602 * 11 10 9 30 30 H 1.09008 * 109.45554 * 179.19040 * 11 10 9 31 31 H 1.08993 * 109.47186 * 49.99664 * 13 12 11 32 32 H 1.09003 * 109.46578 * 289.99485 * 13 12 11 33 33 H 1.08000 * 119.65447 * 0.03151 * 15 14 13 34 34 H 1.08004 * 119.86602 * 180.02562 * 16 15 14 35 35 H 1.08001 * 120.20058 * 179.97438 * 17 16 15 36 36 H 1.07998 * 126.90791 * 359.28116 * 19 18 17 37 37 H 1.07999 * 124.91755 * 179.75910 * 20 19 18 38 38 H 1.08997 * 109.46559 * 181.75713 * 23 12 11 39 39 H 1.09006 * 109.46208 * 301.72454 * 23 12 11 40 40 H 1.08998 * 109.50552 * 180.88235 * 24 23 12 41 41 H 1.08993 * 109.50331 * 60.76237 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3949 5 1 1.5034 2.6199 0.8028 6 1 3.5955 1.4119 0.5918 7 6 2.0044 -1.1942 -0.0005 8 1 3.0733 -1.2007 0.1547 9 6 1.2666 -2.4900 -0.2177 10 6 2.2320 -3.6648 -0.0378 11 6 1.4916 -4.9746 -0.3177 12 7 0.9637 -4.9570 -1.6878 13 6 0.3665 -6.2525 -2.0387 14 6 -0.3763 -6.1261 -3.3438 15 6 -1.7467 -5.9763 -3.3457 16 6 -2.4445 -5.8593 -4.5388 17 6 -1.7739 -5.8921 -5.7417 18 6 -0.3890 -6.0490 -5.7539 19 6 0.6264 -6.1185 -6.8115 20 6 1.8038 -6.2679 -6.1896 21 8 1.6243 -6.2934 -4.8574 22 6 0.3192 -6.1612 -4.5455 23 6 -0.0016 -3.8656 -1.8709 24 6 0.6942 -2.5227 -1.6375 25 1 -0.4849 0.8401 0.0004 26 1 0.4544 -2.5722 0.5045 27 1 2.6103 -3.6719 0.9843 28 1 3.0649 -3.5619 -0.7334 29 1 0.6677 -5.0839 0.3876 30 1 2.1800 -5.8122 -0.2044 31 1 -0.3261 -6.5576 -1.2544 32 1 1.1535 -6.9999 -2.1395 33 1 -2.2826 -5.9496 -2.4085 34 1 -3.5181 -5.7420 -4.5247 35 1 -2.3185 -5.8013 -6.6700 36 1 0.4580 -6.0640 -7.8769 37 1 2.7587 -6.3555 -6.6865 38 1 -0.3980 -3.8977 -2.8858 39 1 -0.8186 -3.9801 -1.1584 40 1 -0.0262 -1.7137 -1.7581 41 1 1.5025 -2.4015 -2.3586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336229069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:48 Heat of formation + Delta-G solvation = 25.731043 kcal Electronic energy + Delta-G solvation = -22495.699216 eV Core-core repulsion = 19341.426567 eV Total energy + Delta-G solvation = -3154.272649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34591 -38.77992 -37.38971 -34.30887 -32.71661 -31.50917 -30.10363 -29.78285 -29.22910 -26.54367 -24.43008 -22.81446 -22.22009 -22.03313 -21.44547 -20.18264 -18.55362 -17.29923 -16.96398 -16.35092 -16.01464 -15.55588 -15.15173 -14.49537 -14.39251 -14.20205 -13.62527 -13.21726 -12.88797 -12.84689 -12.63997 -12.46900 -12.15787 -12.05815 -11.95396 -11.44194 -11.33530 -11.00725 -10.80841 -10.73491 -10.37576 -10.18128 -10.03004 -10.00355 -9.38090 -8.85141 -8.69389 -8.51455 -8.24490 -8.11615 -7.66560 -5.95694 -3.96003 0.93182 1.43989 2.39379 2.91437 3.34670 3.41723 3.45034 3.71054 4.46493 4.49879 4.58290 4.61894 4.94877 5.01621 5.21832 5.35152 5.36766 5.42891 5.53945 5.59519 5.74608 5.78695 5.91506 5.93850 6.14460 6.22400 6.26565 6.36484 6.40965 6.43220 6.50291 6.63132 6.68354 6.69621 6.87973 7.10806 7.18640 7.25007 7.42855 7.64616 7.71897 7.87422 8.07745 8.10749 8.53346 9.07846 9.66738 11.13641 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.004298 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.523390 B = 6512.730178 C = 6615.968716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.528 5.528 13 C 0.093 3.907 14 C -0.059 4.059 15 C -0.092 4.092 16 C -0.133 4.133 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.219 4.219 20 C 0.009 3.991 21 O -0.183 6.183 22 C 0.075 3.925 23 C 0.057 3.943 24 C -0.098 4.098 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.154 0.846 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -14.840 -11.108 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.253 5.253 13 C -0.035 4.035 14 C -0.059 4.059 15 C -0.111 4.111 16 C -0.152 4.152 17 C -0.097 4.097 18 C -0.137 4.137 19 C -0.238 4.238 20 C -0.056 4.056 21 O -0.083 6.083 22 C 0.027 3.973 23 C -0.070 4.070 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.172 0.828 37 H 0.221 0.779 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.087 -14.659 -11.190 18.559 hybrid contribution -0.331 0.911 0.205 0.991 sum -2.418 -13.748 -10.985 17.763 Atomic orbital electron populations 1.69971 1.05919 1.26316 1.50690 1.24957 0.94738 0.98948 0.95166 0.86692 0.80091 0.83962 0.77940 1.20771 1.21413 1.19923 1.21189 0.94041 0.91070 1.48671 0.92757 1.18696 0.93969 0.91800 0.92762 1.21665 0.99229 0.93783 0.99626 1.22143 0.97788 0.99443 0.87343 1.62142 1.36117 1.01708 1.25312 1.21031 0.96790 0.93583 0.92047 1.18699 0.92594 1.02946 0.91698 1.20874 0.92121 0.99284 0.98774 1.20951 1.00018 1.02367 0.91821 1.20453 0.91589 0.99377 0.98279 1.19954 0.94707 1.06311 0.92688 1.22443 0.91462 1.10523 0.99396 1.23965 1.00096 1.01238 0.80303 1.84089 1.25301 1.74819 1.24101 1.19284 0.81355 1.01990 0.94630 1.22293 0.92975 0.92663 0.99108 1.21578 0.99411 0.92956 0.99662 0.93178 0.95428 0.93035 0.92570 0.95661 0.92379 0.94172 0.90375 0.85067 0.85411 0.85813 0.82806 0.77875 0.92327 0.95933 0.90862 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 12.20 55.43 0.68 -25.34 16 2 C 0.06 1.78 5.23 -17.82 -0.09 1.69 16 3 Si 0.89 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.37 8.48 -34.44 -0.29 -14.66 16 8 H 0.05 1.52 7.77 -52.48 -0.41 1.11 16 9 C 0.05 1.18 2.03 -91.65 -0.19 0.99 16 10 C -0.11 -2.27 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.12 5.42 -3.84 -0.02 1.10 16 12 N -0.53 -9.85 4.80 -236.11 -1.13 -10.99 16 13 C 0.09 1.44 5.42 -4.98 -0.03 1.41 16 14 C -0.06 -0.89 3.69 -104.52 -0.39 -1.27 16 15 C -0.09 -1.22 8.61 -39.54 -0.34 -1.56 16 16 C -0.13 -1.59 10.03 -39.58 -0.40 -1.99 16 17 C -0.08 -0.96 10.10 -39.33 -0.40 -1.36 16 18 C -0.14 -1.89 6.40 -105.16 -0.67 -2.56 16 19 C -0.22 -2.52 11.14 -37.62 -0.42 -2.94 16 20 C 0.01 0.11 11.96 29.24 0.35 0.46 16 21 O -0.18 -2.78 10.58 3.85 0.04 -2.74 16 22 C 0.08 1.18 7.11 -38.49 -0.27 0.90 16 23 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 24 C -0.10 -2.38 5.19 -26.65 -0.14 -2.51 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.95 8.12 -51.92 -0.42 0.53 16 31 H 0.04 0.57 7.93 -51.93 -0.41 0.16 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.13 1.56 8.02 -52.49 -0.42 1.14 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.06 1.17 6.03 -51.93 -0.31 0.86 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.96 7.00 -51.93 -0.36 1.60 16 41 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -31.30 331.73 -10.02 -41.32 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.12 Total: -0.33 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.45 Total: -23.59 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.46 Total: -36.33 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.30 -10.02 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336229069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.048 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds