Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00268 * 2 1 4 4 H 1.48510 * 109.47054 * 274.99197 * 3 2 1 5 5 H 1.48498 * 109.47050 * 34.98954 * 3 2 1 6 6 H 1.48496 * 109.47241 * 154.99259 * 3 2 1 7 7 C 1.37882 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99629 * 189.55085 * 7 2 1 9 9 C 1.50693 * 120.00487 * 9.55538 * 7 2 1 10 10 C 1.53117 * 109.52230 * 185.43237 * 9 7 2 11 11 C 1.53038 * 109.27630 * 182.37762 * 10 9 7 12 12 N 1.46843 * 109.52862 * 59.17603 * 11 10 9 13 13 C 1.46903 * 111.00274 * 174.16382 * 12 11 10 14 14 C 1.50695 * 109.46970 * 170.00212 * 13 12 11 15 15 C 1.37863 * 120.01960 * 259.99331 * 14 13 12 16 16 C 1.38714 * 120.69388 * 180.02562 * 15 14 13 17 17 C 1.37758 * 120.27500 * 0.02562 * 16 15 14 18 18 C 1.39378 * 119.60183 * 0.25376 * 17 16 15 19 19 C 1.46786 * 134.34433 * 180.41674 * 18 17 16 20 20 C 1.33990 * 106.18336 * 179.49418 * 19 18 17 21 21 O 1.34447 * 110.16404 * 359.78472 * 20 19 18 22 22 C 1.34832 * 110.89113 * 359.97438 * 21 20 19 23 23 C 1.46848 * 111.19666 * 298.26041 * 12 11 10 24 24 C 1.53040 * 109.52425 * 61.73927 * 23 12 11 25 25 H 0.96997 * 119.99472 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51905 * 305.55183 * 9 7 2 27 27 H 1.08992 * 109.50893 * 62.43388 * 10 9 7 28 28 H 1.08999 * 109.53436 * 302.33103 * 10 9 7 29 29 H 1.09002 * 109.46227 * 299.15602 * 11 10 9 30 30 H 1.09008 * 109.45554 * 179.19040 * 11 10 9 31 31 H 1.08993 * 109.47186 * 49.99664 * 13 12 11 32 32 H 1.09003 * 109.46578 * 289.99485 * 13 12 11 33 33 H 1.08000 * 119.65447 * 0.03151 * 15 14 13 34 34 H 1.08004 * 119.86602 * 180.02562 * 16 15 14 35 35 H 1.08001 * 120.20058 * 179.97438 * 17 16 15 36 36 H 1.07998 * 126.90791 * 359.28116 * 19 18 17 37 37 H 1.07999 * 124.91755 * 179.75910 * 20 19 18 38 38 H 1.08997 * 109.46559 * 181.75713 * 23 12 11 39 39 H 1.09006 * 109.46208 * 301.72454 * 23 12 11 40 40 H 1.08998 * 109.50552 * 180.88235 * 24 23 12 41 41 H 1.08993 * 109.50331 * 60.76237 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3949 5 1 1.5034 2.6199 0.8028 6 1 3.5955 1.4119 0.5918 7 6 2.0044 -1.1942 -0.0005 8 1 3.0733 -1.2007 0.1547 9 6 1.2666 -2.4900 -0.2177 10 6 2.2320 -3.6648 -0.0378 11 6 1.4916 -4.9746 -0.3177 12 7 0.9637 -4.9570 -1.6878 13 6 0.3665 -6.2525 -2.0387 14 6 -0.3763 -6.1261 -3.3438 15 6 -1.7467 -5.9763 -3.3457 16 6 -2.4445 -5.8593 -4.5388 17 6 -1.7739 -5.8921 -5.7417 18 6 -0.3890 -6.0490 -5.7539 19 6 0.6264 -6.1185 -6.8115 20 6 1.8038 -6.2679 -6.1896 21 8 1.6243 -6.2934 -4.8574 22 6 0.3192 -6.1612 -4.5455 23 6 -0.0016 -3.8656 -1.8709 24 6 0.6942 -2.5227 -1.6375 25 1 -0.4849 0.8401 0.0004 26 1 0.4544 -2.5722 0.5045 27 1 2.6103 -3.6719 0.9843 28 1 3.0649 -3.5619 -0.7334 29 1 0.6677 -5.0839 0.3876 30 1 2.1800 -5.8122 -0.2044 31 1 -0.3261 -6.5576 -1.2544 32 1 1.1535 -6.9999 -2.1395 33 1 -2.2826 -5.9496 -2.4085 34 1 -3.5181 -5.7420 -4.5247 35 1 -2.3185 -5.8013 -6.6700 36 1 0.4580 -6.0640 -7.8769 37 1 2.7587 -6.3555 -6.6865 38 1 -0.3980 -3.8977 -2.8858 39 1 -0.8186 -3.9801 -1.1584 40 1 -0.0262 -1.7137 -1.7581 41 1 1.5025 -2.4015 -2.3586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336229069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = 7.879878 kcal Electronic energy + Delta-G solvation = -22496.473300 eV Core-core repulsion = 19341.426567 eV Total energy + Delta-G solvation = -3155.046733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.30972 -40.17527 -38.61972 -35.96229 -34.17628 -32.96023 -31.59415 -31.30448 -30.20611 -28.18347 -26.07116 -24.05561 -23.66412 -23.18787 -22.95248 -21.28977 -20.35782 -18.46456 -18.27733 -17.88993 -17.20744 -16.72709 -16.51828 -16.24906 -15.84176 -15.39477 -14.95599 -14.69648 -14.45950 -14.29198 -14.11402 -13.61031 -13.51588 -13.33112 -13.22537 -12.96124 -12.78962 -12.70309 -12.49330 -12.36323 -12.10883 -11.92749 -11.73429 -11.36012 -11.01282 -10.72428 -10.67887 -10.41865 -9.51494 -9.23910 -8.98022 -8.12727 -6.20570 -0.03082 0.44295 1.39142 1.40916 1.49626 1.50928 2.01278 2.43373 2.68624 3.16542 3.18250 3.55134 3.69231 3.92997 4.07630 4.19644 4.24408 4.30065 4.38803 4.43396 4.46850 4.57187 4.61104 4.67909 4.75653 4.79504 4.84627 4.94115 4.98048 5.05536 5.20903 5.28133 5.32865 5.43177 5.48725 5.50377 5.56197 5.61829 5.78109 5.93313 5.97592 6.23578 6.25572 6.32266 6.39689 6.90935 7.45708 8.96007 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.004298 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.523390 B = 6512.730178 C = 6615.968716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.098 3.902 14 C -0.082 4.082 15 C -0.099 4.099 16 C -0.135 4.135 17 C -0.081 4.081 18 C -0.155 4.155 19 C -0.224 4.224 20 C 0.004 3.996 21 O -0.209 6.209 22 C 0.044 3.956 23 C 0.076 3.924 24 C -0.088 4.088 25 H 0.260 0.740 26 H -0.004 1.004 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.183 0.817 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.018 0.982 40 H 0.041 0.959 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -15.655 -12.363 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.061 4.061 12 N -0.262 5.262 13 C -0.029 4.029 14 C -0.083 4.083 15 C -0.117 4.117 16 C -0.153 4.153 17 C -0.099 4.099 18 C -0.156 4.156 19 C -0.242 4.242 20 C -0.060 4.060 21 O -0.110 6.110 22 C -0.003 4.003 23 C -0.051 4.051 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.986 -15.491 -12.447 19.971 hybrid contribution -0.376 1.141 0.546 1.320 sum -2.362 -14.350 -11.901 18.792 Atomic orbital electron populations 1.70087 1.07282 1.27172 1.51275 1.25723 0.95562 1.02320 0.94764 0.85683 0.79038 0.79761 0.78050 1.20340 1.20804 1.19148 1.21560 0.94102 0.92656 1.48918 0.93138 1.18649 0.93664 0.92730 0.92373 1.21533 0.98310 0.94027 0.99779 1.22078 0.98134 0.98493 0.87437 1.62048 1.36101 1.02803 1.25298 1.21030 0.97344 0.91636 0.92899 1.18794 0.93342 1.04760 0.91396 1.21130 0.91751 0.98889 0.99979 1.21319 1.01451 1.01300 0.91237 1.20863 0.91255 0.98181 0.99607 1.20422 0.95800 1.06375 0.93018 1.22846 0.90780 1.10169 1.00446 1.24817 1.01915 1.00248 0.79062 1.84055 1.25426 1.75404 1.26132 1.19607 0.81905 1.03278 0.95530 1.21949 0.92640 0.91371 0.99174 1.21350 0.98216 0.94463 0.98576 0.93077 0.98616 0.92540 0.93280 0.95469 0.89358 0.92759 0.89667 0.84039 0.82610 0.83103 0.79925 0.74053 0.91883 0.96334 0.94034 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 12.20 21.45 0.26 -54.70 16 2 C 0.01 0.86 5.23 84.66 0.44 1.30 16 3 Si 0.95 44.92 29.55 68.60 2.03 46.95 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.68 8.48 25.60 0.22 -30.47 16 8 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 9 C 0.04 2.33 2.03 -11.46 -0.02 2.31 16 10 C -0.10 -4.28 5.32 30.65 0.16 -4.12 16 11 C 0.07 2.38 5.42 86.33 0.47 2.85 16 12 N -0.54 -19.76 4.80 -900.91 -4.32 -24.09 16 13 C 0.10 2.93 5.42 85.55 0.46 3.39 16 14 C -0.08 -2.43 3.69 -19.80 -0.07 -2.50 16 15 C -0.10 -2.52 8.61 22.29 0.19 -2.33 16 16 C -0.14 -2.97 10.03 22.27 0.22 -2.74 16 17 C -0.08 -1.82 10.10 22.43 0.23 -1.60 16 18 C -0.16 -4.12 6.40 -20.21 -0.13 -4.25 16 19 C -0.22 -4.71 11.14 23.54 0.26 -4.45 16 20 C 0.00 0.08 11.96 66.85 0.80 0.88 16 21 O -0.21 -6.24 10.58 -9.15 -0.10 -6.33 16 22 C 0.04 1.36 7.11 22.98 0.16 1.53 16 23 C 0.08 3.15 4.80 86.33 0.41 3.57 16 24 C -0.09 -4.40 5.19 30.65 0.16 -4.24 16 25 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.00 -0.25 8.09 -2.39 -0.02 -0.27 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 2.68 8.12 -2.38 -0.02 2.66 16 31 H 0.05 1.46 7.93 -2.39 -0.02 1.44 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.14 3.18 8.02 -2.91 -0.02 3.16 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.24 2.68 8.06 -2.91 -0.02 2.65 16 38 H 0.06 2.54 6.03 -2.39 -0.01 2.53 16 39 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.04 2.31 7.00 -2.39 -0.02 2.29 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.18 331.73 2.84 -66.33 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.01 Total: 12.71 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 3.97 Total: -40.88 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.06 Total: -78.78 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.10 Total: -6.33 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.18 2.84 -66.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336229069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.214 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds