Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 H 1.09002 * 115.54813 * 325.71628 * 13 11 10 15 15 C 1.53022 * 117.49989 * 111.39025 * 13 11 10 16 16 C 1.52784 * 117.50583 * 179.97438 * 13 11 10 17 17 C 1.53201 * 117.77054 * 0.11808 * 16 13 11 18 18 C 1.53459 * 107.60905 * 190.59803 * 17 16 13 19 19 C 1.52584 * 109.05873 * 294.08852 * 18 17 16 20 20 C 1.50463 * 111.37533 * 54.13780 * 19 18 17 21 21 C 1.38796 * 118.43788 * 158.63970 * 20 19 18 22 22 C 1.37986 * 120.40875 * 179.69306 * 21 20 19 23 23 C 1.38260 * 119.99667 * 0.02562 * 22 21 20 24 24 C 1.38104 * 119.73433 * 0.12229 * 23 22 21 25 25 C 1.37918 * 122.11807 * 338.58644 * 20 19 18 26 26 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 28 28 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 29 29 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 30 30 H 1.08998 * 117.50531 * 214.95361 * 15 13 11 31 31 H 1.08997 * 117.50611 * 359.97438 * 15 13 11 32 32 H 1.08997 * 109.83107 * 310.12205 * 17 16 13 33 33 H 1.08999 * 109.82974 * 71.07274 * 17 16 13 34 34 H 1.09003 * 109.54175 * 53.95918 * 18 17 16 35 35 H 1.09000 * 109.54154 * 174.21558 * 18 17 16 36 36 H 1.08989 * 109.10039 * 174.62311 * 19 18 17 37 37 H 1.09002 * 109.09891 * 293.72010 * 19 18 17 38 38 H 1.07998 * 119.79722 * 359.66604 * 21 20 19 39 39 H 1.08003 * 120.00163 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.13489 * 180.09848 * 23 22 21 41 41 H 1.08004 * 119.87553 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 1 3.6565 -5.8608 -0.5415 15 6 2.8146 -6.8816 1.2805 16 6 2.1613 -7.4458 0.0193 17 6 0.6372 -7.6006 0.0165 18 6 0.3199 -9.0763 0.2933 19 6 0.8204 -9.9211 -0.8747 20 6 2.2771 -9.6656 -1.1517 21 6 2.9973 -10.6296 -1.8434 22 6 4.3339 -10.4345 -2.1250 23 6 4.9639 -9.2733 -1.7172 24 6 4.2508 -8.3136 -1.0261 25 6 2.9098 -8.5106 -0.7422 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 3.1566 -3.4355 0.0009 30 1 3.7917 -7.2752 1.5603 31 1 2.1604 -6.6139 2.1102 32 1 0.2006 -6.9761 0.7958 33 1 0.2381 -7.3128 -0.9561 34 1 0.8183 -9.3906 1.2103 35 1 -0.7573 -9.2039 0.4002 36 1 0.6823 -10.9758 -0.6369 37 1 0.2409 -9.6774 -1.7652 38 1 2.5087 -11.5383 -2.1627 39 1 4.8880 -11.1889 -2.6639 40 1 6.0096 -9.1176 -1.9378 41 1 4.7406 -7.4054 -0.7069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336421324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = -5.367579 kcal Electronic energy + Delta-G solvation = -21868.828234 eV Core-core repulsion = 18713.207048 eV Total energy + Delta-G solvation = -3155.621186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72283 -38.84359 -36.62565 -34.86640 -34.12969 -32.30861 -30.68375 -30.28564 -27.79127 -26.87959 -24.11742 -23.09204 -22.71811 -22.06689 -21.15995 -19.42879 -18.78045 -17.10673 -16.73798 -15.77589 -15.38656 -15.25564 -15.12292 -14.56153 -14.46111 -13.92668 -13.78400 -13.46928 -13.23950 -13.00385 -12.65640 -12.50601 -12.17064 -12.05851 -11.88486 -11.76627 -11.39783 -11.20890 -11.03209 -10.93591 -10.88813 -10.42465 -10.30095 -10.04362 -9.88280 -9.39668 -8.94784 -8.76803 -8.73181 -8.42562 -7.86640 -6.16950 -4.23726 1.25434 1.29618 3.11464 3.24086 3.30174 3.32574 3.59932 3.97288 4.21354 4.34230 4.59221 4.64931 4.73373 4.84611 4.93181 5.03016 5.15453 5.16324 5.19336 5.24842 5.33398 5.46629 5.50599 5.61316 5.78252 5.82351 5.91363 5.93323 5.96775 6.01599 6.09024 6.11307 6.38082 6.42725 6.53109 6.66587 6.72547 6.94465 7.30913 7.45655 7.51712 7.67198 7.97032 8.64333 8.78482 9.12107 9.43051 10.93261 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.003410 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.492176 B = 8208.180842 C = 8848.108541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.527 3.473 12 O -0.550 6.550 13 C -0.175 4.175 14 H 0.119 0.881 15 C -0.138 4.138 16 C -0.056 4.056 17 C -0.071 4.071 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.068 4.068 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.034 4.034 26 H 0.266 0.734 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.390 0.610 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -20.754 -1.048 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.355 5.355 11 C 0.312 3.688 12 O -0.429 6.429 13 C -0.196 4.196 14 H 0.137 0.863 15 C -0.176 4.176 16 C -0.057 4.057 17 C -0.108 4.108 18 C -0.159 4.159 19 C -0.118 4.118 20 C -0.068 4.068 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.034 4.034 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.223 0.777 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.880 -20.736 -1.049 21.873 hybrid contribution 1.142 1.124 -0.177 1.612 sum 8.022 -19.611 -1.225 21.224 Atomic orbital electron populations 1.69974 1.06104 1.27294 1.48931 1.24954 0.94917 0.99450 0.94703 0.86416 0.79633 0.82643 0.78229 1.20459 1.20999 1.19735 1.21233 0.93273 0.90474 1.53172 0.91913 1.19105 0.88296 0.81928 0.97711 1.46419 1.11140 1.05948 1.72003 1.19456 0.88422 0.83574 0.77363 1.90636 1.16585 1.84455 1.51243 1.22520 1.01399 0.91498 1.04174 0.86291 1.23125 1.02457 1.00989 0.91010 1.20133 0.95809 0.90538 0.99224 1.21320 0.90603 0.94675 1.04212 1.21613 1.00717 0.95921 0.97646 1.20408 0.91744 1.00119 0.99523 1.19650 0.95971 0.93549 0.97679 1.21099 0.94442 0.99021 0.99498 1.21030 0.94920 0.97752 1.00645 1.21059 0.99782 0.94242 0.99057 1.21095 0.93852 0.99395 0.99325 1.18855 0.93070 0.93784 0.97741 0.92453 0.95537 0.95528 0.77710 0.88073 0.87765 0.89133 0.90929 0.91942 0.91398 0.91171 0.90629 0.86281 0.86343 0.86158 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 10 N -0.71 -15.00 5.55 -61.47 -0.34 -15.34 16 11 C 0.53 10.50 7.60 -10.98 -0.08 10.42 16 12 O -0.55 -12.68 13.17 5.55 0.07 -12.61 16 13 C -0.17 -2.61 5.46 -91.87 -0.50 -3.11 16 14 H 0.12 1.54 6.57 -51.93 -0.34 1.20 16 15 C -0.14 -1.78 9.33 -26.81 -0.25 -2.03 16 16 C -0.06 -0.79 2.24 -155.71 -0.35 -1.14 16 17 C -0.07 -1.05 4.01 -26.39 -0.11 -1.16 16 18 C -0.12 -1.41 5.92 -26.71 -0.16 -1.57 16 19 C -0.08 -0.86 5.66 -28.21 -0.16 -1.02 16 20 C -0.07 -0.82 5.75 -104.65 -0.60 -1.42 16 21 C -0.12 -1.27 9.63 -39.47 -0.38 -1.65 16 22 C -0.13 -1.23 10.04 -39.67 -0.40 -1.63 16 23 C -0.12 -1.26 10.06 -39.62 -0.40 -1.66 16 24 C -0.12 -1.37 8.90 -39.54 -0.35 -1.73 16 25 C -0.03 -0.44 5.60 -104.60 -0.59 -1.03 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.39 7.17 8.32 -40.82 -0.34 6.83 16 30 H 0.10 1.08 8.02 -51.93 -0.42 0.66 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.09 1.53 6.47 -51.93 -0.34 1.19 16 33 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 34 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.27 6.32 -52.48 -0.33 0.94 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -31.37 333.82 -10.22 -41.59 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.93 Total: 6.38 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -4.77 Total: -15.53 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.40 Total: -40.73 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.37 -10.22 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.226 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds