Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 H 1.09002 * 115.54813 * 325.71628 * 13 11 10 15 15 C 1.53022 * 117.49989 * 111.39025 * 13 11 10 16 16 C 1.52784 * 117.50583 * 179.97438 * 13 11 10 17 17 C 1.53201 * 117.77054 * 0.11808 * 16 13 11 18 18 C 1.53459 * 107.60905 * 190.59803 * 17 16 13 19 19 C 1.52584 * 109.05873 * 294.08852 * 18 17 16 20 20 C 1.50463 * 111.37533 * 54.13780 * 19 18 17 21 21 C 1.38796 * 118.43788 * 158.63970 * 20 19 18 22 22 C 1.37986 * 120.40875 * 179.69306 * 21 20 19 23 23 C 1.38260 * 119.99667 * 0.02562 * 22 21 20 24 24 C 1.38104 * 119.73433 * 0.12229 * 23 22 21 25 25 C 1.37918 * 122.11807 * 338.58644 * 20 19 18 26 26 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 28 28 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 29 29 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 30 30 H 1.08998 * 117.50531 * 214.95361 * 15 13 11 31 31 H 1.08997 * 117.50611 * 359.97438 * 15 13 11 32 32 H 1.08997 * 109.83107 * 310.12205 * 17 16 13 33 33 H 1.08999 * 109.82974 * 71.07274 * 17 16 13 34 34 H 1.09003 * 109.54175 * 53.95918 * 18 17 16 35 35 H 1.09000 * 109.54154 * 174.21558 * 18 17 16 36 36 H 1.08989 * 109.10039 * 174.62311 * 19 18 17 37 37 H 1.09002 * 109.09891 * 293.72010 * 19 18 17 38 38 H 1.07998 * 119.79722 * 359.66604 * 21 20 19 39 39 H 1.08003 * 120.00163 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.13489 * 180.09848 * 23 22 21 41 41 H 1.08004 * 119.87553 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 1 3.6565 -5.8608 -0.5415 15 6 2.8146 -6.8816 1.2805 16 6 2.1613 -7.4458 0.0193 17 6 0.6372 -7.6006 0.0165 18 6 0.3199 -9.0763 0.2933 19 6 0.8204 -9.9211 -0.8747 20 6 2.2771 -9.6656 -1.1517 21 6 2.9973 -10.6296 -1.8434 22 6 4.3339 -10.4345 -2.1250 23 6 4.9639 -9.2733 -1.7172 24 6 4.2508 -8.3136 -1.0261 25 6 2.9098 -8.5106 -0.7422 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 3.1566 -3.4355 0.0009 30 1 3.7917 -7.2752 1.5603 31 1 2.1604 -6.6139 2.1102 32 1 0.2006 -6.9761 0.7958 33 1 0.2381 -7.3128 -0.9561 34 1 0.8183 -9.3906 1.2103 35 1 -0.7573 -9.2039 0.4002 36 1 0.6823 -10.9758 -0.6369 37 1 0.2409 -9.6774 -1.7652 38 1 2.5087 -11.5383 -2.1627 39 1 4.8880 -11.1889 -2.6639 40 1 6.0096 -9.1176 -1.9378 41 1 4.7406 -7.4054 -0.7069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336421324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = -23.369576 kcal Electronic energy + Delta-G solvation = -21869.608859 eV Core-core repulsion = 18713.207048 eV Total energy + Delta-G solvation = -3156.401811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82213 -40.19324 -37.81513 -36.08006 -35.82018 -34.33897 -31.57039 -31.16436 -29.63094 -28.06507 -25.79091 -23.94107 -23.84316 -23.55694 -22.26377 -21.02731 -19.78725 -18.78379 -17.91986 -17.30773 -16.91713 -16.34824 -16.27332 -16.02301 -15.98778 -15.21376 -15.01773 -14.48101 -14.34082 -14.11271 -14.06983 -13.91189 -13.74883 -13.54236 -13.02734 -12.96950 -12.87690 -12.72025 -12.32223 -12.20887 -12.07074 -11.99667 -11.50160 -11.41700 -11.11482 -10.98391 -10.81257 -10.50719 -9.82378 -9.59971 -9.32754 -8.30624 -6.47375 0.42485 0.51157 1.41997 1.44503 1.55807 1.61679 2.29054 2.49942 2.69536 3.03974 3.11727 3.54225 3.58633 3.77468 3.85153 3.97848 4.09821 4.17655 4.28991 4.31844 4.35590 4.49626 4.64223 4.70141 4.72316 4.85826 4.94454 4.95723 5.04841 5.08291 5.11822 5.19576 5.21099 5.22373 5.37757 5.44868 5.51174 5.66324 5.68014 5.70326 5.81366 5.83669 6.16472 6.63480 6.90956 7.21919 7.48813 8.81591 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.003410 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.492176 B = 8208.180842 C = 8848.108541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.268 3.732 10 N -0.705 5.705 11 C 0.522 3.478 12 O -0.588 6.588 13 C -0.182 4.182 14 H 0.146 0.854 15 C -0.119 4.119 16 C -0.055 4.055 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.079 4.079 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.057 4.057 26 H 0.269 0.731 27 H -0.014 1.014 28 H -0.012 1.012 29 H 0.407 0.593 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.119 -22.174 -1.339 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.145 3.855 10 N -0.354 5.354 11 C 0.309 3.691 12 O -0.470 6.470 13 C -0.202 4.202 14 H 0.163 0.837 15 C -0.156 4.156 16 C -0.055 4.055 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.057 4.057 26 H 0.078 0.922 27 H 0.004 0.996 28 H 0.006 0.994 29 H 0.242 0.758 30 H 0.152 0.848 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.117 -22.189 -1.338 24.423 hybrid contribution 0.087 1.472 -0.113 1.479 sum 10.204 -20.717 -1.451 23.139 Atomic orbital electron populations 1.70138 1.08277 1.28584 1.49935 1.26079 0.95794 1.03931 0.93810 0.85148 0.78513 0.76897 0.78616 1.19602 1.20872 1.17872 1.21618 0.94284 0.90603 1.52959 0.89899 1.18529 0.88647 0.84283 0.94003 1.46171 1.11144 1.05406 1.72653 1.20370 0.88915 0.84189 0.75583 1.90628 1.18851 1.85061 1.52438 1.22412 1.01028 0.89922 1.06874 0.83665 1.23230 1.03632 0.98924 0.89824 1.20155 0.95171 0.90106 1.00106 1.21165 0.91632 0.96576 1.01433 1.21557 1.01382 0.93627 0.98629 1.20412 0.91335 1.01157 0.98671 1.19867 0.96503 0.93877 0.98289 1.21383 0.94867 0.99349 0.98851 1.21419 0.94862 0.98128 0.99874 1.21389 1.00903 0.93929 0.98238 1.21266 0.93389 1.00271 0.99689 1.18863 0.93824 0.93866 0.99120 0.92227 0.99624 0.99402 0.75767 0.84831 0.88778 0.92172 0.93822 0.91222 0.90712 0.88717 0.91006 0.84146 0.83715 0.83863 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.99 42.68 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 15.04 5.43 85.63 0.46 15.50 16 10 N -0.70 -30.89 5.55 -466.79 -2.59 -33.48 16 11 C 0.52 21.71 7.60 87.66 0.67 22.38 16 12 O -0.59 -29.19 13.17 -3.04 -0.04 -29.23 16 13 C -0.18 -5.37 5.46 -11.60 -0.06 -5.43 16 14 H 0.15 3.50 6.57 -2.39 -0.02 3.49 16 15 C -0.12 -2.93 9.33 30.54 0.29 -2.64 16 16 C -0.05 -1.52 2.24 -52.96 -0.12 -1.64 16 17 C -0.07 -2.21 4.01 30.82 0.12 -2.08 16 18 C -0.11 -2.65 5.92 30.61 0.18 -2.47 16 19 C -0.08 -1.58 5.66 29.64 0.17 -1.41 16 20 C -0.09 -1.88 5.75 -19.88 -0.11 -1.99 16 21 C -0.13 -2.25 9.63 22.34 0.22 -2.03 16 22 C -0.13 -2.00 10.04 22.21 0.22 -1.77 16 23 C -0.13 -2.16 10.06 22.24 0.22 -1.94 16 24 C -0.13 -2.63 8.90 22.30 0.20 -2.44 16 25 C -0.06 -1.37 5.60 -19.85 -0.11 -1.48 16 26 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 27 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 28 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.41 14.90 8.32 -92.71 -0.77 14.13 16 30 H 0.13 2.45 8.02 -2.39 -0.02 2.43 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 2.21 6.47 -2.39 -0.02 2.19 16 33 H 0.04 1.57 7.90 -2.39 -0.02 1.55 16 34 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.13 2.33 6.32 -2.91 -0.02 2.32 16 Total: -1.00 -71.96 333.82 2.99 -68.98 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.26 Total: 24.82 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.04 Total: -19.33 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -2.30 Total: -89.93 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.04 Total: -29.23 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.96 2.99 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.607 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds