Wall clock time and date at job start Tue Mar 31 2020 06:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99633 * 2 1 4 4 H 1.48500 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46684 * 299.99873 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99808 * 3 2 1 7 7 C 1.37871 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99429 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00456 * 0.02562 * 11 10 9 13 13 C 1.50710 * 119.99543 * 180.02562 * 11 10 9 14 14 H 1.08997 * 115.54770 * 282.94122 * 13 11 10 15 15 C 1.53036 * 117.50012 * 137.21387 * 13 11 10 16 16 C 1.52780 * 117.50113 * 68.62550 * 13 11 10 17 17 C 1.53199 * 117.76981 * 215.08185 * 16 13 11 18 18 C 1.53458 * 107.61549 * 190.63212 * 17 16 13 19 19 C 1.52581 * 109.06218 * 294.08171 * 18 17 16 20 20 C 1.50461 * 111.32686 * 54.11379 * 19 18 17 21 21 C 1.38804 * 118.41734 * 158.64767 * 20 19 18 22 22 C 1.37992 * 120.41330 * 179.69924 * 21 20 19 23 23 C 1.38270 * 119.98091 * 359.97438 * 22 21 20 24 24 C 1.37861 * 119.72616 * 0.03620 * 23 22 21 25 25 C 1.37842 * 122.19662 * 338.54373 * 20 19 18 26 26 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47174 * 60.00192 * 9 7 2 28 28 H 1.08998 * 109.46763 * 299.99734 * 9 7 2 29 29 H 0.97003 * 120.00440 * 0.02562 * 10 9 7 30 30 H 1.08994 * 117.50697 * 145.04914 * 15 13 11 31 31 H 1.09005 * 117.50788 * 359.97438 * 15 13 11 32 32 H 1.08993 * 109.83386 * 71.09892 * 17 16 13 33 33 H 1.09007 * 109.82710 * 310.15982 * 17 16 13 34 34 H 1.08995 * 109.54104 * 174.20785 * 18 17 16 35 35 H 1.09007 * 109.60482 * 53.99673 * 18 17 16 36 36 H 1.09000 * 109.09265 * 174.56938 * 19 18 17 37 37 H 1.08991 * 109.09825 * 293.65502 * 19 18 17 38 38 H 1.07997 * 119.79729 * 359.69028 * 21 20 19 39 39 H 1.08005 * 120.01266 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.12422 * 180.17562 * 23 22 21 41 41 H 1.08009 * 119.81884 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5617 -5.1050 0.0011 13 6 2.7335 -6.0287 0.0016 14 1 3.2064 -6.2433 -0.9566 15 6 2.4355 -7.2128 0.9242 16 6 3.5672 -6.2434 1.2638 17 6 5.0058 -6.7416 1.0927 18 6 5.5310 -7.1299 2.4814 19 6 5.6313 -5.8759 3.3448 20 6 4.3229 -5.1340 3.3864 21 6 4.0925 -4.2597 4.4395 22 6 2.9094 -3.5535 4.5151 23 6 1.9450 -3.7146 3.5374 24 6 2.1711 -4.5825 2.4905 25 6 3.3565 -5.2946 2.4167 26 1 -0.4850 0.8400 0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 3.1570 -3.4353 0.0009 30 1 2.7124 -8.2068 0.5730 31 1 1.5313 -7.1632 1.5310 32 1 5.6242 -5.9489 0.6719 33 1 5.0202 -7.6112 0.4355 34 1 6.5164 -7.5853 2.3842 35 1 4.8459 -7.8389 2.9464 36 1 5.9113 -6.1624 4.3585 37 1 6.3997 -5.2209 2.9344 38 1 4.8438 -4.1314 5.2047 39 1 2.7367 -2.8752 5.3376 40 1 1.0193 -3.1609 3.5928 41 1 1.4186 -4.7097 1.7262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336421325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:16 Heat of formation + Delta-G solvation = -7.851848 kcal Electronic energy + Delta-G solvation = -22987.341014 eV Core-core repulsion = 19831.612101 eV Total energy + Delta-G solvation = -3155.728912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20804 -40.02836 -38.08900 -36.16396 -35.63855 -34.32101 -31.55615 -31.21217 -29.61752 -28.08226 -25.79088 -24.00363 -23.78119 -23.54632 -22.17306 -21.26489 -19.72246 -19.01374 -17.88603 -17.12923 -17.06819 -16.76423 -16.44522 -16.07137 -15.91282 -15.05600 -14.88668 -14.59772 -14.26037 -14.16508 -13.96938 -13.75294 -13.64205 -13.48670 -13.07041 -12.96758 -12.83754 -12.79601 -12.27904 -12.18574 -12.01801 -11.82069 -11.49955 -11.31477 -11.25611 -10.99982 -10.84504 -10.65916 -9.93200 -9.51877 -9.33813 -8.31685 -6.47374 0.39609 0.49839 1.38546 1.39705 1.53122 1.65357 2.26277 2.44348 2.65235 3.03109 3.06009 3.53064 3.59922 3.74184 3.89254 3.96921 4.13869 4.19041 4.23925 4.35063 4.40657 4.51681 4.63515 4.70733 4.80904 4.90507 4.99858 5.04979 5.07886 5.11122 5.12824 5.14632 5.21610 5.26025 5.36085 5.45456 5.53339 5.62092 5.65786 5.72405 5.76662 5.82561 6.15479 6.61959 6.84419 7.20276 7.40724 8.80770 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005762 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.035658 B = 4858.276613 C = 5547.114620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.273 3.727 10 N -0.699 5.699 11 C 0.537 3.463 12 O -0.609 6.609 13 C -0.187 4.187 14 H 0.163 0.837 15 C -0.127 4.127 16 C -0.056 4.056 17 C -0.077 4.077 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.071 4.071 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.064 4.064 26 H 0.268 0.732 27 H -0.016 1.016 28 H -0.014 1.014 29 H 0.403 0.597 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 -14.330 6.876 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.094 0.906 9 C 0.151 3.849 10 N -0.347 5.347 11 C 0.327 3.673 12 O -0.494 6.494 13 C -0.207 4.207 14 H 0.180 0.820 15 C -0.164 4.164 16 C -0.056 4.056 17 C -0.114 4.114 18 C -0.148 4.148 19 C -0.115 4.115 20 C -0.071 4.071 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.064 4.064 26 H 0.077 0.923 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.238 0.762 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.757 -14.340 6.868 22.385 hybrid contribution -0.844 1.631 -0.173 1.844 sum 14.914 -12.709 6.695 20.706 Atomic orbital electron populations 1.70137 1.08166 1.28405 1.50180 1.25995 0.95725 1.03655 0.93893 0.85178 0.79063 0.77603 0.77820 1.17894 1.20182 1.20382 1.21535 0.93901 0.90611 1.52562 0.90553 1.18467 0.88491 0.84253 0.93730 1.46286 1.10903 1.05448 1.72032 1.20127 0.88868 0.84616 0.73706 1.90666 1.19186 1.85635 1.53867 1.22514 1.02033 0.97088 0.99100 0.82011 1.23244 0.98350 0.95078 0.99767 1.20459 0.95564 0.98684 0.90923 1.21380 0.89545 1.01806 0.98715 1.21493 1.02564 0.96674 0.94113 1.20477 0.92183 0.96573 1.02224 1.19969 0.96432 0.97318 0.93428 1.21424 0.97258 0.96702 0.99068 1.21280 0.94152 0.99926 0.98660 1.21028 0.99899 0.99111 0.95928 1.21749 0.98709 0.97420 0.98266 1.18900 0.93597 0.97568 0.96341 0.92283 0.99787 0.99565 0.76194 0.83701 0.90902 0.90307 0.88451 0.88387 0.91839 0.89027 0.89495 0.83031 0.84726 0.88895 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -30.94 9.28 25.60 0.24 -30.70 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.27 15.60 5.39 85.63 0.46 16.06 16 10 N -0.70 -31.70 4.04 -473.83 -1.91 -33.61 16 11 C 0.54 23.03 4.13 87.66 0.36 23.39 16 12 O -0.61 -31.98 16.07 -3.02 -0.05 -32.03 16 13 C -0.19 -5.48 5.87 -11.60 -0.07 -5.55 16 14 H 0.16 3.69 8.14 -2.39 -0.02 3.67 16 15 C -0.13 -3.23 9.28 30.55 0.28 -2.94 16 16 C -0.06 -1.38 2.24 -52.96 -0.12 -1.50 16 17 C -0.08 -1.19 5.73 30.81 0.18 -1.02 16 18 C -0.11 -1.44 5.92 30.61 0.18 -1.26 16 19 C -0.08 -1.23 5.66 29.63 0.17 -1.06 16 20 C -0.07 -1.80 5.75 -19.90 -0.11 -1.92 16 21 C -0.13 -3.24 9.63 22.35 0.22 -3.02 16 22 C -0.12 -3.81 10.04 22.22 0.22 -3.59 16 23 C -0.14 -5.56 10.05 22.19 0.22 -5.34 16 24 C -0.14 -5.68 7.14 22.24 0.16 -5.52 16 25 C -0.06 -1.97 5.54 -19.87 -0.11 -2.08 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.40 16.21 8.32 -92.71 -0.77 15.44 16 30 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.30 8.02 -2.38 -0.02 2.28 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.05 8.04 -2.38 -0.02 1.03 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 36 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.09 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.11 5.21 3.30 -7.16 -0.02 5.18 16 Total: -1.00 -76.15 332.33 3.34 -72.81 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.25 Total: 29.43 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 2.74 Total: -25.20 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.63 Total: -90.63 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.05 Total: -32.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.15 3.34 -72.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.961 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds