Wall clock time and date at job start Tue Mar 31 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46919 * 239.99801 * 3 2 1 5 5 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99864 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09001 * 115.55290 * 34.03566 * 13 11 10 15 15 C 1.53032 * 117.49772 * 248.31000 * 13 11 10 16 16 C 1.52796 * 117.49962 * 179.72217 * 13 11 10 17 17 C 1.53199 * 117.74402 * 359.85855 * 16 13 11 18 18 C 1.53461 * 107.60136 * 169.50393 * 17 16 13 19 19 C 1.52574 * 109.06537 * 65.92598 * 18 17 16 20 20 C 1.50466 * 111.34484 * 305.80838 * 19 18 17 21 21 C 1.38797 * 118.41350 * 201.38837 * 20 19 18 22 22 C 1.37978 * 120.39369 * 180.32338 * 21 20 19 23 23 C 1.38252 * 119.99213 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.75682 * 359.86015 * 23 22 21 25 25 C 1.37912 * 122.12084 * 21.45150 * 20 19 18 26 26 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 28 28 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 29 29 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 30 30 H 1.08998 * 117.50986 * 359.97438 * 15 13 11 31 31 H 1.08996 * 117.50201 * 145.05146 * 15 13 11 32 32 H 1.09004 * 109.83249 * 289.02193 * 17 16 13 33 33 H 1.08998 * 109.83558 * 49.91236 * 17 16 13 34 34 H 1.09000 * 109.53432 * 185.80283 * 18 17 16 35 35 H 1.08998 * 109.53969 * 305.96302 * 18 17 16 36 36 H 1.09001 * 109.10644 * 66.29385 * 19 18 17 37 37 H 1.09008 * 109.10214 * 185.32799 * 19 18 17 38 38 H 1.07990 * 119.80302 * 0.30056 * 21 20 19 39 39 H 1.08003 * 120.00539 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.12427 * 179.88142 * 23 22 21 41 41 H 1.08000 * 119.88761 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.6552 -5.8559 0.5610 15 6 2.8169 -6.8936 -1.2535 16 6 2.1613 -7.4458 0.0119 17 6 0.6371 -7.5999 0.0142 18 6 0.3197 -9.0785 -0.2467 19 6 0.8176 -9.9105 0.9313 20 6 2.2743 -9.6530 1.2068 21 6 2.9927 -10.6103 1.9096 22 6 4.3291 -10.4131 2.1906 23 6 4.9603 -9.2570 1.7708 24 6 4.2492 -8.3041 1.0683 25 6 2.9082 -8.5031 0.7853 26 1 -0.4849 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 3.1566 -3.4354 0.0002 30 1 2.1637 -6.6343 -2.0866 31 1 3.7946 -7.2898 -1.5278 32 1 0.2366 -7.3011 0.9829 33 1 0.2018 -6.9829 -0.7720 34 1 -0.7574 -9.2066 -0.3542 35 1 0.8183 -9.4027 -1.1602 36 1 0.2366 -9.6569 1.8180 37 1 0.6786 -10.9678 0.7054 38 1 2.5027 -11.5145 2.2389 39 1 4.8821 -11.1620 2.7383 40 1 6.0059 -9.0996 1.9912 41 1 4.7402 -7.4003 0.7391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336421326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:20 Heat of formation + Delta-G solvation = -5.321724 kcal Electronic energy + Delta-G solvation = -21869.392332 eV Core-core repulsion = 18713.773134 eV Total energy + Delta-G solvation = -3155.619198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72233 -38.84362 -36.62503 -34.86578 -34.12919 -32.30805 -30.68449 -30.28483 -27.79044 -26.87897 -24.11644 -23.09208 -22.71813 -22.06569 -21.16026 -19.42899 -18.78075 -17.10611 -16.73724 -15.77359 -15.38625 -15.25419 -15.12230 -14.56027 -14.46173 -13.92913 -13.78486 -13.46953 -13.23874 -13.00372 -12.65669 -12.50425 -12.17068 -12.05338 -11.88075 -11.76534 -11.39844 -11.20787 -11.03110 -10.96045 -10.86760 -10.42407 -10.30074 -10.04200 -9.88250 -9.41055 -8.94731 -8.76755 -8.72707 -8.42509 -7.86592 -6.16697 -4.23626 1.25467 1.29639 3.11372 3.25272 3.30028 3.31507 3.60087 3.97381 4.21165 4.34324 4.59278 4.64943 4.73302 4.84657 4.93220 5.03054 5.15511 5.16376 5.19458 5.24845 5.33422 5.46661 5.50592 5.61265 5.78199 5.82425 5.91392 5.93357 5.96814 6.01641 6.09025 6.11313 6.38113 6.42774 6.53144 6.66632 6.72660 6.94503 7.30867 7.45610 7.51787 7.67094 7.97257 8.64315 8.78414 9.12105 9.43127 10.93477 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003413 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.185339 B = 8202.120282 C = 8840.210567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.527 3.473 12 O -0.550 6.550 13 C -0.175 4.175 14 H 0.119 0.881 15 C -0.138 4.138 16 C -0.057 4.057 17 C -0.071 4.071 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.068 4.068 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.034 4.034 26 H 0.266 0.734 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.390 0.610 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -20.732 1.173 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.355 5.355 11 C 0.312 3.688 12 O -0.429 6.429 13 C -0.196 4.196 14 H 0.137 0.863 15 C -0.176 4.176 16 C -0.057 4.057 17 C -0.108 4.108 18 C -0.159 4.159 19 C -0.118 4.118 20 C -0.068 4.068 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.034 4.034 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.223 0.777 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.863 -20.711 1.177 21.850 hybrid contribution 1.153 1.122 0.167 1.618 sum 8.016 -19.589 1.344 21.208 Atomic orbital electron populations 1.69966 1.06103 1.27406 1.48841 1.24950 0.94918 0.99434 0.94689 0.86475 0.79425 0.82314 0.78704 1.20050 1.21060 1.20061 1.21196 0.93240 0.90492 1.53303 0.91964 1.19098 0.88289 0.81910 0.97708 1.46419 1.11140 1.05952 1.72001 1.19456 0.88423 0.83573 0.77362 1.90636 1.16580 1.84454 1.51249 1.22526 1.01415 0.91399 1.04255 0.86285 1.23131 1.02434 1.00948 0.91063 1.20137 0.95810 0.90674 0.99092 1.21322 0.90599 0.94622 1.04274 1.21608 1.00729 0.95973 0.97584 1.20407 0.91751 1.00152 0.99480 1.19647 0.95969 0.93610 0.97621 1.21098 0.94454 0.99060 0.99443 1.21026 0.94919 0.97772 1.00628 1.21058 0.99786 0.94316 0.98981 1.21096 0.93862 0.99413 0.99296 1.18850 0.93074 0.93835 0.97684 0.92394 0.95545 0.95528 0.77715 0.87763 0.88070 0.90931 0.89126 0.91414 0.91945 0.90625 0.91177 0.86280 0.86343 0.86164 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 10 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 11 C 0.53 10.50 7.59 -10.98 -0.08 10.42 16 12 O -0.55 -12.68 13.16 5.55 0.07 -12.61 16 13 C -0.17 -2.61 5.46 -91.86 -0.50 -3.11 16 14 H 0.12 1.54 6.57 -51.93 -0.34 1.20 16 15 C -0.14 -1.78 9.33 -26.79 -0.25 -2.03 16 16 C -0.06 -0.79 2.24 -155.70 -0.35 -1.14 16 17 C -0.07 -1.05 4.01 -26.39 -0.11 -1.16 16 18 C -0.12 -1.41 5.92 -26.71 -0.16 -1.57 16 19 C -0.08 -0.86 5.66 -28.21 -0.16 -1.02 16 20 C -0.07 -0.82 5.75 -104.65 -0.60 -1.42 16 21 C -0.12 -1.27 9.63 -39.47 -0.38 -1.65 16 22 C -0.13 -1.23 10.04 -39.67 -0.40 -1.63 16 23 C -0.12 -1.26 10.06 -39.63 -0.40 -1.66 16 24 C -0.12 -1.37 8.90 -39.54 -0.35 -1.73 16 25 C -0.03 -0.44 5.60 -104.61 -0.59 -1.03 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.39 7.17 8.32 -40.82 -0.34 6.83 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.08 8.02 -51.93 -0.42 0.66 16 32 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 33 H 0.09 1.53 6.47 -51.93 -0.34 1.19 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.27 6.33 -52.49 -0.33 0.94 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -31.36 333.81 -10.22 -41.59 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.93 Total: 6.42 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -4.77 Total: -15.54 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.40 Total: -40.75 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.36 -10.22 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.266 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds