Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46919 * 239.99801 * 3 2 1 5 5 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99864 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09001 * 115.55290 * 34.03566 * 13 11 10 15 15 C 1.53032 * 117.49772 * 248.31000 * 13 11 10 16 16 C 1.52796 * 117.49962 * 179.72217 * 13 11 10 17 17 C 1.53199 * 117.74402 * 359.85855 * 16 13 11 18 18 C 1.53461 * 107.60136 * 169.50393 * 17 16 13 19 19 C 1.52574 * 109.06537 * 65.92598 * 18 17 16 20 20 C 1.50466 * 111.34484 * 305.80838 * 19 18 17 21 21 C 1.38797 * 118.41350 * 201.38837 * 20 19 18 22 22 C 1.37978 * 120.39369 * 180.32338 * 21 20 19 23 23 C 1.38252 * 119.99213 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.75682 * 359.86015 * 23 22 21 25 25 C 1.37912 * 122.12084 * 21.45150 * 20 19 18 26 26 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 28 28 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 29 29 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 30 30 H 1.08998 * 117.50986 * 359.97438 * 15 13 11 31 31 H 1.08996 * 117.50201 * 145.05146 * 15 13 11 32 32 H 1.09004 * 109.83249 * 289.02193 * 17 16 13 33 33 H 1.08998 * 109.83558 * 49.91236 * 17 16 13 34 34 H 1.09000 * 109.53432 * 185.80283 * 18 17 16 35 35 H 1.08998 * 109.53969 * 305.96302 * 18 17 16 36 36 H 1.09001 * 109.10644 * 66.29385 * 19 18 17 37 37 H 1.09008 * 109.10214 * 185.32799 * 19 18 17 38 38 H 1.07990 * 119.80302 * 0.30056 * 21 20 19 39 39 H 1.08003 * 120.00539 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.12427 * 179.88142 * 23 22 21 41 41 H 1.08000 * 119.88761 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.6552 -5.8559 0.5610 15 6 2.8169 -6.8936 -1.2535 16 6 2.1613 -7.4458 0.0119 17 6 0.6371 -7.5999 0.0142 18 6 0.3197 -9.0785 -0.2467 19 6 0.8176 -9.9105 0.9313 20 6 2.2743 -9.6530 1.2068 21 6 2.9927 -10.6103 1.9096 22 6 4.3291 -10.4131 2.1906 23 6 4.9603 -9.2570 1.7708 24 6 4.2492 -8.3041 1.0683 25 6 2.9082 -8.5031 0.7853 26 1 -0.4849 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 3.1566 -3.4354 0.0002 30 1 2.1637 -6.6343 -2.0866 31 1 3.7946 -7.2898 -1.5278 32 1 0.2366 -7.3011 0.9829 33 1 0.2018 -6.9829 -0.7720 34 1 -0.7574 -9.2066 -0.3542 35 1 0.8183 -9.4027 -1.1602 36 1 0.2366 -9.6569 1.8180 37 1 0.6786 -10.9678 0.7054 38 1 2.5027 -11.5145 2.2389 39 1 4.8821 -11.1620 2.7383 40 1 6.0059 -9.0996 1.9912 41 1 4.7402 -7.4003 0.7391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336421326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -23.325862 kcal Electronic energy + Delta-G solvation = -21870.173050 eV Core-core repulsion = 18713.773134 eV Total energy + Delta-G solvation = -3156.399916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.82178 -40.19382 -37.81489 -36.08001 -35.81994 -34.33924 -31.57139 -31.16416 -29.63075 -28.06478 -25.79010 -23.94140 -23.84280 -23.55701 -22.26441 -21.02808 -19.78784 -18.78239 -17.91878 -17.30593 -16.91798 -16.34622 -16.27444 -16.02525 -15.98924 -15.21547 -15.01765 -14.47923 -14.34109 -14.10484 -14.06975 -13.91105 -13.74838 -13.54288 -13.03094 -12.97990 -12.87551 -12.69124 -12.32908 -12.21318 -12.06973 -11.99904 -11.52675 -11.41645 -11.11381 -10.98371 -10.80154 -10.50703 -9.82381 -9.59985 -9.32767 -8.30457 -6.47396 0.42464 0.51131 1.41918 1.46179 1.54422 1.61620 2.29154 2.50178 2.69319 3.04013 3.11669 3.54201 3.58597 3.77503 3.85120 3.97839 4.09868 4.17680 4.28994 4.31789 4.35574 4.49572 4.64215 4.70091 4.72269 4.85844 4.94450 4.95749 5.04820 5.08246 5.11749 5.19591 5.21049 5.22340 5.37755 5.44799 5.51102 5.66322 5.67997 5.70332 5.81365 5.83659 6.16464 6.63232 6.90955 7.21919 7.48804 8.81553 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003413 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.185339 B = 8202.120282 C = 8840.210567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.268 3.732 10 N -0.705 5.705 11 C 0.522 3.478 12 O -0.588 6.588 13 C -0.182 4.182 14 H 0.146 0.854 15 C -0.119 4.119 16 C -0.055 4.055 17 C -0.071 4.071 18 C -0.114 4.114 19 C -0.079 4.079 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.057 4.057 26 H 0.269 0.731 27 H -0.012 1.012 28 H -0.014 1.014 29 H 0.407 0.593 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.111 -22.142 1.489 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.146 3.854 10 N -0.354 5.354 11 C 0.309 3.691 12 O -0.470 6.470 13 C -0.202 4.202 14 H 0.163 0.837 15 C -0.156 4.156 16 C -0.056 4.056 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.057 4.057 26 H 0.078 0.922 27 H 0.006 0.994 28 H 0.004 0.996 29 H 0.242 0.758 30 H 0.112 0.888 31 H 0.152 0.848 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.104 -22.155 1.490 24.396 hybrid contribution 0.098 1.467 0.095 1.473 sum 10.202 -20.689 1.586 23.122 Atomic orbital electron populations 1.70134 1.08283 1.28656 1.49867 1.26079 0.95791 1.03928 0.93782 0.85202 0.77926 0.76534 0.79532 1.18569 1.21018 1.18672 1.21591 0.94289 0.90623 1.53089 0.89896 1.18522 0.88642 0.84271 0.93994 1.46171 1.11145 1.05408 1.72654 1.20371 0.88916 0.84189 0.75582 1.90628 1.18848 1.85061 1.52442 1.22418 1.01041 0.89822 1.06964 0.83668 1.23237 1.03614 0.98857 0.89881 1.20160 0.95169 0.90218 1.00005 1.21167 0.91633 0.96543 1.01469 1.21552 1.01392 0.93656 0.98591 1.20411 0.91343 1.01214 0.98605 1.19864 0.96498 0.93940 0.98233 1.21382 0.94882 0.99381 0.98801 1.21416 0.94858 0.98124 0.99883 1.21387 1.00910 0.94001 0.98166 1.21266 0.93398 1.00278 0.99668 1.18860 0.93831 0.93942 0.99037 0.92217 0.99429 0.99618 0.75767 0.88765 0.84822 0.93841 0.92159 0.90730 0.91217 0.91007 0.88719 0.84145 0.83714 0.83868 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 42.66 29.54 68.60 2.03 44.68 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.56 -30.87 9.28 25.60 0.24 -30.63 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 15.07 5.43 85.63 0.46 15.53 16 10 N -0.70 -30.91 5.55 -466.79 -2.59 -33.50 16 11 C 0.52 21.72 7.59 87.66 0.67 22.39 16 12 O -0.59 -29.20 13.16 -3.04 -0.04 -29.24 16 13 C -0.18 -5.37 5.46 -11.60 -0.06 -5.43 16 14 H 0.15 3.50 6.57 -2.39 -0.02 3.49 16 15 C -0.12 -2.92 9.33 30.55 0.29 -2.63 16 16 C -0.05 -1.52 2.24 -52.95 -0.12 -1.64 16 17 C -0.07 -2.21 4.01 30.82 0.12 -2.09 16 18 C -0.11 -2.65 5.92 30.61 0.18 -2.47 16 19 C -0.08 -1.58 5.66 29.63 0.17 -1.41 16 20 C -0.09 -1.88 5.75 -19.88 -0.11 -1.99 16 21 C -0.13 -2.25 9.63 22.34 0.22 -2.03 16 22 C -0.13 -2.00 10.04 22.21 0.22 -1.78 16 23 C -0.13 -2.16 10.06 22.24 0.22 -1.94 16 24 C -0.13 -2.64 8.90 22.30 0.20 -2.44 16 25 C -0.06 -1.37 5.60 -19.85 -0.11 -1.48 16 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 27 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.41 14.90 8.32 -92.71 -0.77 14.13 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.13 2.45 8.02 -2.39 -0.02 2.43 16 32 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 33 H 0.06 2.21 6.47 -2.39 -0.02 2.19 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.42 8.10 -2.38 -0.02 1.40 16 38 H 0.14 1.81 8.06 -2.92 -0.02 1.79 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.13 2.34 6.33 -2.91 -0.02 2.32 16 Total: -1.00 -71.99 333.81 2.98 -69.00 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.26 Total: 24.94 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.04 Total: -19.37 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -2.30 Total: -90.00 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.99 2.98 -69.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.676 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds