Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47043 * 239.99533 * 3 2 1 5 5 H 1.48496 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47072 * 119.99932 * 3 2 1 7 7 C 1.37882 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99582 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00312 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99925 * 180.02562 * 11 10 9 14 14 H 1.09001 * 115.56867 * 77.11865 * 13 11 10 15 15 C 1.53047 * 117.50448 * 222.83179 * 13 11 10 16 16 C 1.52805 * 117.50373 * 291.41333 * 13 11 10 17 17 C 1.53191 * 117.72834 * 144.88946 * 16 13 11 18 18 C 1.53436 * 107.65447 * 169.54538 * 17 16 13 19 19 C 1.52586 * 109.06414 * 65.79220 * 18 17 16 20 20 C 1.50467 * 111.33551 * 305.65652 * 19 18 17 21 21 C 1.38799 * 118.44439 * 201.68667 * 20 19 18 22 22 C 1.38001 * 120.39832 * 180.65135 * 21 20 19 23 23 C 1.38264 * 119.98336 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.75808 * 359.85381 * 23 22 21 25 25 C 1.37920 * 122.09200 * 22.03583 * 20 19 18 26 26 H 0.97000 * 120.00255 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47007 * 60.00721 * 9 7 2 28 28 H 1.08999 * 109.47795 * 300.00045 * 9 7 2 29 29 H 0.97002 * 119.99500 * 0.02562 * 10 9 7 30 30 H 1.09002 * 117.49930 * 0.02562 * 15 13 11 31 31 H 1.08996 * 117.50598 * 214.95306 * 15 13 11 32 32 H 1.09001 * 109.82557 * 50.00502 * 17 16 13 33 33 H 1.08997 * 109.82208 * 289.08545 * 17 16 13 34 34 H 1.09005 * 109.53843 * 305.92017 * 18 17 16 35 35 H 1.08995 * 109.54338 * 185.67079 * 18 17 16 36 36 H 1.08997 * 109.11061 * 185.17429 * 19 18 17 37 37 H 1.09003 * 109.10591 * 66.13234 * 19 18 17 38 38 H 1.08002 * 119.80461 * 0.66844 * 21 20 19 39 39 H 1.08003 * 120.01144 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.12703 * 179.87680 * 23 22 21 41 41 H 1.08007 * 119.88491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0029 12 8 0.5614 -5.1050 0.0039 13 6 2.7331 -6.0288 0.0032 14 1 3.2061 -6.2431 0.9616 15 6 2.4351 -7.2137 -0.9184 16 6 3.5669 -6.2447 -1.2589 17 6 5.0054 -6.7423 -1.0864 18 6 5.5338 -7.1284 -2.4742 19 6 5.6322 -5.8736 -3.3369 20 6 4.3204 -5.1381 -3.3849 21 6 4.0876 -4.2700 -4.4426 22 6 2.9040 -3.5647 -4.5195 23 6 1.9413 -3.7213 -3.5394 24 6 2.1685 -4.5870 -2.4877 25 6 3.3556 -5.2964 -2.4122 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 3.1567 -3.4354 0.0010 30 1 1.5309 -7.1645 -1.5252 31 1 2.7120 -8.2074 -0.5663 32 1 5.0194 -7.6126 -0.4303 33 1 5.6225 -5.9497 -0.6633 34 1 4.8503 -7.8383 -2.9400 35 1 6.5203 -7.5813 -2.3757 36 1 5.9190 -6.1582 -4.3492 37 1 6.3956 -5.2149 -2.9228 38 1 4.8372 -4.1458 -5.2101 39 1 2.7292 -2.8911 -5.3454 40 1 1.0151 -3.1690 -3.5962 41 1 1.4181 -4.7106 -1.7207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336421327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = 10.631561 kcal Electronic energy + Delta-G solvation = -22984.084576 eV Core-core repulsion = 19829.157165 eV Total energy + Delta-G solvation = -3154.927411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90627 -38.55701 -36.87990 -34.62205 -34.17324 -32.26724 -30.36878 -30.11311 -27.69079 -26.96383 -24.08031 -22.90543 -22.64039 -21.83861 -21.08754 -19.61173 -18.67091 -17.33639 -16.07641 -15.66563 -15.63107 -15.21100 -15.05774 -14.96582 -14.26759 -13.76148 -13.56008 -13.52358 -13.02203 -12.76898 -12.57278 -12.33978 -12.00915 -11.94835 -11.85970 -11.66400 -11.33297 -11.08187 -11.01801 -10.88241 -10.59105 -10.33890 -10.32176 -10.21603 -9.84619 -9.39438 -9.06347 -8.74226 -8.37537 -8.15258 -7.82664 -6.15082 -4.21067 1.62325 1.75135 3.24197 3.26200 3.30877 3.32417 3.68023 4.04130 4.24746 4.36995 4.61344 4.64650 4.72873 4.92462 5.05653 5.15153 5.21152 5.25445 5.31208 5.47916 5.49857 5.62844 5.65590 5.73107 5.75702 5.81952 5.86565 5.90963 6.01726 6.13143 6.19367 6.22706 6.37933 6.41426 6.82161 6.92805 7.00865 7.29574 7.35524 7.44002 7.51536 7.68347 7.98066 8.62612 8.77776 9.06935 9.44940 10.95072 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.005760 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.134336 B = 4859.990542 C = 5546.809548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.536 3.464 12 O -0.559 6.559 13 C -0.175 4.175 14 H 0.129 0.871 15 C -0.134 4.134 16 C -0.070 4.070 17 C -0.081 4.081 18 C -0.114 4.114 19 C -0.077 4.077 20 C -0.077 4.077 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.052 4.052 26 H 0.266 0.734 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.392 0.608 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -13.084 -6.291 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.131 3.869 10 N -0.352 5.352 11 C 0.323 3.677 12 O -0.441 6.441 13 C -0.196 4.196 14 H 0.147 0.853 15 C -0.172 4.172 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.151 4.151 19 C -0.114 4.114 20 C -0.077 4.077 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.136 4.136 25 C -0.052 4.052 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.225 0.775 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.727 -13.059 -6.283 18.031 hybrid contribution 0.803 1.287 0.069 1.519 sum 11.531 -11.772 -6.214 17.611 Atomic orbital electron populations 1.69959 1.06040 1.27320 1.49075 1.24911 0.94867 0.99288 0.94762 0.86518 0.79471 0.82500 0.78706 1.20094 1.21082 1.20102 1.21148 0.93171 0.90374 1.52961 0.92078 1.19098 0.88260 0.81980 0.97607 1.46596 1.11362 1.05850 1.71376 1.19197 0.88486 0.83967 0.76050 1.90709 1.16384 1.84955 1.52048 1.22555 1.01968 0.98621 0.96503 0.85283 1.23125 0.99170 0.93703 1.01168 1.20241 0.93334 0.99937 0.93495 1.21254 0.92669 1.00663 0.97238 1.21459 1.00936 0.97380 0.95370 1.20335 0.94558 0.96194 1.00321 1.19445 0.95448 0.98096 0.94741 1.20963 0.97557 0.97963 0.98338 1.21057 0.94111 0.99348 0.99086 1.21118 0.99550 0.97785 0.93934 1.22010 0.97668 0.95421 0.98462 1.18648 0.94411 0.97503 0.94662 0.92458 0.95488 0.95622 0.77489 0.87962 0.87835 0.91160 0.90901 0.91554 0.91524 0.91218 0.90881 0.86709 0.86517 0.86015 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.61 5.39 -5.19 -0.03 6.58 16 10 N -0.70 -15.05 4.04 -63.85 -0.26 -15.30 16 11 C 0.54 10.84 4.13 -10.99 -0.05 10.80 16 12 O -0.56 -13.45 16.07 5.56 0.09 -13.36 16 13 C -0.18 -2.65 5.87 -91.85 -0.54 -3.19 16 14 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 15 C -0.13 -1.80 9.28 -26.79 -0.25 -2.04 16 16 C -0.07 -0.94 2.24 -155.70 -0.35 -1.28 16 17 C -0.08 -0.83 5.73 -26.41 -0.15 -0.98 16 18 C -0.11 -1.06 5.92 -26.72 -0.16 -1.22 16 19 C -0.08 -0.81 5.66 -28.21 -0.16 -0.97 16 20 C -0.08 -1.08 5.75 -104.64 -0.60 -1.68 16 21 C -0.13 -1.82 9.63 -39.46 -0.38 -2.20 16 22 C -0.12 -1.83 10.04 -39.66 -0.40 -2.23 16 23 C -0.11 -1.91 10.06 -39.62 -0.40 -2.31 16 24 C -0.12 -2.18 7.16 -39.54 -0.28 -2.46 16 25 C -0.05 -0.82 5.54 -104.60 -0.58 -1.40 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 7.67 8.32 -40.82 -0.34 7.33 16 30 H 0.10 1.55 8.02 -51.93 -0.42 1.13 16 31 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 32 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 8.10 -51.93 -0.42 0.21 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.15 3.08 3.29 -57.30 -0.19 2.89 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -31.41 332.35 -10.15 -41.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.97 Total: 9.19 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.74 Total: -17.83 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.48 Total: -40.59 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.41 -10.15 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.184 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds