Wall clock time and date at job start Tue Mar 31 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47043 * 239.99533 * 3 2 1 5 5 H 1.48496 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47072 * 119.99932 * 3 2 1 7 7 C 1.37882 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99582 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00312 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99925 * 180.02562 * 11 10 9 14 14 H 1.09001 * 115.56867 * 77.11865 * 13 11 10 15 15 C 1.53047 * 117.50448 * 222.83179 * 13 11 10 16 16 C 1.52805 * 117.50373 * 291.41333 * 13 11 10 17 17 C 1.53191 * 117.72834 * 144.88946 * 16 13 11 18 18 C 1.53436 * 107.65447 * 169.54538 * 17 16 13 19 19 C 1.52586 * 109.06414 * 65.79220 * 18 17 16 20 20 C 1.50467 * 111.33551 * 305.65652 * 19 18 17 21 21 C 1.38799 * 118.44439 * 201.68667 * 20 19 18 22 22 C 1.38001 * 120.39832 * 180.65135 * 21 20 19 23 23 C 1.38264 * 119.98336 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.75808 * 359.85381 * 23 22 21 25 25 C 1.37920 * 122.09200 * 22.03583 * 20 19 18 26 26 H 0.97000 * 120.00255 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47007 * 60.00721 * 9 7 2 28 28 H 1.08999 * 109.47795 * 300.00045 * 9 7 2 29 29 H 0.97002 * 119.99500 * 0.02562 * 10 9 7 30 30 H 1.09002 * 117.49930 * 0.02562 * 15 13 11 31 31 H 1.08996 * 117.50598 * 214.95306 * 15 13 11 32 32 H 1.09001 * 109.82557 * 50.00502 * 17 16 13 33 33 H 1.08997 * 109.82208 * 289.08545 * 17 16 13 34 34 H 1.09005 * 109.53843 * 305.92017 * 18 17 16 35 35 H 1.08995 * 109.54338 * 185.67079 * 18 17 16 36 36 H 1.08997 * 109.11061 * 185.17429 * 19 18 17 37 37 H 1.09003 * 109.10591 * 66.13234 * 19 18 17 38 38 H 1.08002 * 119.80461 * 0.66844 * 21 20 19 39 39 H 1.08003 * 120.01144 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.12703 * 179.87680 * 23 22 21 41 41 H 1.08007 * 119.88491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0029 12 8 0.5614 -5.1050 0.0039 13 6 2.7331 -6.0288 0.0032 14 1 3.2061 -6.2431 0.9616 15 6 2.4351 -7.2137 -0.9184 16 6 3.5669 -6.2447 -1.2589 17 6 5.0054 -6.7423 -1.0864 18 6 5.5338 -7.1284 -2.4742 19 6 5.6322 -5.8736 -3.3369 20 6 4.3204 -5.1381 -3.3849 21 6 4.0876 -4.2700 -4.4426 22 6 2.9040 -3.5647 -4.5195 23 6 1.9413 -3.7213 -3.5394 24 6 2.1685 -4.5870 -2.4877 25 6 3.3556 -5.2964 -2.4122 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 3.1567 -3.4354 0.0010 30 1 1.5309 -7.1645 -1.5252 31 1 2.7120 -8.2074 -0.5663 32 1 5.0194 -7.6126 -0.4303 33 1 5.6225 -5.9497 -0.6633 34 1 4.8503 -7.8383 -2.9400 35 1 6.5203 -7.5813 -2.3757 36 1 5.9190 -6.1582 -4.3492 37 1 6.3956 -5.2149 -2.9228 38 1 4.8372 -4.1458 -5.2101 39 1 2.7292 -2.8911 -5.3454 40 1 1.0151 -3.1690 -3.5962 41 1 1.4181 -4.7106 -1.7207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336421327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:21 Heat of formation + Delta-G solvation = -7.794706 kcal Electronic energy + Delta-G solvation = -22984.883599 eV Core-core repulsion = 19829.157165 eV Total energy + Delta-G solvation = -3155.726434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20335 -40.02328 -38.08242 -36.16294 -35.63439 -34.31988 -31.55076 -31.21207 -29.61550 -28.07636 -25.78820 -24.00797 -23.77839 -23.54371 -22.17257 -21.26555 -19.72397 -19.01077 -17.87924 -17.13042 -17.06807 -16.76323 -16.44696 -16.07332 -15.91841 -15.05406 -14.88762 -14.59325 -14.25556 -14.15698 -13.96242 -13.75192 -13.64015 -13.48941 -13.07519 -13.00100 -12.83818 -12.73164 -12.29107 -12.18456 -12.01922 -11.82229 -11.54686 -11.31457 -11.25706 -11.00054 -10.82247 -10.65926 -9.93058 -9.51660 -9.33822 -8.31178 -6.47119 0.39515 0.49304 1.38493 1.42655 1.50783 1.65283 2.26367 2.44490 2.65017 3.03335 3.05749 3.52949 3.59819 3.74130 3.89199 3.96975 4.13667 4.18978 4.23835 4.35021 4.40424 4.51484 4.63348 4.70633 4.80796 4.90347 4.99820 5.04946 5.07771 5.11014 5.12731 5.14560 5.21668 5.25904 5.36004 5.45159 5.53280 5.61970 5.65765 5.72045 5.76481 5.82591 6.15297 6.61616 6.84449 7.20332 7.40721 8.80785 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.005760 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.134336 B = 4859.990542 C = 5546.809548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.274 3.726 10 N -0.699 5.699 11 C 0.537 3.463 12 O -0.609 6.609 13 C -0.187 4.187 14 H 0.163 0.837 15 C -0.127 4.127 16 C -0.056 4.056 17 C -0.077 4.077 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.072 4.072 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.064 4.064 26 H 0.268 0.732 27 H -0.014 1.014 28 H -0.016 1.016 29 H 0.403 0.597 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.712 -14.312 -6.845 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.151 3.849 10 N -0.347 5.347 11 C 0.327 3.673 12 O -0.494 6.494 13 C -0.208 4.208 14 H 0.180 0.820 15 C -0.164 4.164 16 C -0.056 4.056 17 C -0.115 4.115 18 C -0.148 4.148 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.064 4.064 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.729 -14.319 -6.837 22.342 hybrid contribution -0.820 1.622 0.168 1.825 sum 14.909 -12.697 -6.670 20.688 Atomic orbital electron populations 1.70126 1.08165 1.28536 1.49997 1.25995 0.95723 1.03643 0.93852 0.85280 0.78044 0.76923 0.79453 1.18926 1.20823 1.18572 1.21479 0.93899 0.90639 1.52846 0.90554 1.18457 0.88480 0.84223 0.93713 1.46287 1.10909 1.05452 1.72025 1.20122 0.88871 0.84617 0.73709 1.90667 1.19183 1.85637 1.53868 1.22520 1.02046 0.97077 0.99113 0.82004 1.23248 0.98339 0.95074 0.99768 1.20460 0.95566 0.98678 0.90908 1.21376 0.89534 1.01824 0.98721 1.21490 1.02549 0.96670 0.94122 1.20480 0.92115 0.96639 1.02235 1.19985 0.96451 0.97352 0.93369 1.21423 0.97251 0.96719 0.99059 1.21279 0.94175 0.99928 0.98646 1.21083 0.99901 0.99111 0.95902 1.21822 0.98686 0.97428 0.98236 1.18926 0.93583 0.97588 0.96304 0.92272 0.99596 0.99794 0.76192 0.90904 0.83691 0.88447 0.90302 0.91839 0.88372 0.89034 0.89511 0.83025 0.84731 0.88887 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.10 9.28 25.60 0.24 -30.86 16 8 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 9 C 0.27 15.65 5.39 85.63 0.46 16.11 16 10 N -0.70 -31.72 4.04 -474.31 -1.92 -33.63 16 11 C 0.54 23.03 4.13 87.66 0.36 23.40 16 12 O -0.61 -31.99 16.07 -3.02 -0.05 -32.04 16 13 C -0.19 -5.49 5.87 -11.59 -0.07 -5.56 16 14 H 0.16 3.69 8.14 -2.39 -0.02 3.67 16 15 C -0.13 -3.22 9.28 30.56 0.28 -2.94 16 16 C -0.06 -1.37 2.24 -52.95 -0.12 -1.49 16 17 C -0.08 -1.19 5.73 30.80 0.18 -1.02 16 18 C -0.11 -1.44 5.92 30.60 0.18 -1.26 16 19 C -0.08 -1.24 5.66 29.64 0.17 -1.07 16 20 C -0.07 -1.81 5.75 -19.88 -0.11 -1.92 16 21 C -0.13 -3.25 9.63 22.35 0.22 -3.03 16 22 C -0.12 -3.82 10.04 22.22 0.22 -3.60 16 23 C -0.14 -5.58 10.06 22.24 0.22 -5.36 16 24 C -0.14 -5.70 7.16 22.30 0.16 -5.54 16 25 C -0.06 -1.97 5.54 -19.85 -0.11 -2.08 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H 0.40 16.20 8.32 -92.71 -0.77 15.43 16 30 H 0.07 2.30 8.02 -2.39 -0.02 2.28 16 31 H 0.15 2.45 8.13 -2.39 -0.02 2.43 16 32 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.09 4.00 8.06 -2.91 -0.02 3.97 16 41 H 0.11 5.23 3.29 -7.44 -0.02 5.21 16 Total: -1.00 -76.13 332.35 3.34 -72.79 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.25 Total: 29.65 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 2.74 Total: -25.33 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -1.63 Total: -90.64 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.05 Total: -32.04 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -76.13 3.34 -72.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336421327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.995 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds