Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47382 * 239.99848 * 3 2 1 5 5 H 1.48504 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47349 * 120.00254 * 3 2 1 7 7 C 1.37871 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52634 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.61761 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99608 * 13 12 11 15 15 C 1.38742 * 119.79535 * 269.72506 * 14 13 12 16 16 C 1.37843 * 120.68903 * 179.74245 * 15 14 13 17 17 C 1.38941 * 119.81612 * 0.54906 * 16 15 14 18 18 O 1.34809 * 133.49619 * 179.73284 * 17 16 15 19 19 C 1.34458 * 110.88903 * 179.97438 * 18 17 16 20 20 C 1.33999 * 110.15352 * 359.97438 * 19 18 17 21 21 C 1.40497 * 119.22247 * 359.70996 * 17 16 15 22 22 C 1.36737 * 119.78865 * 89.99700 * 14 13 12 23 23 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 24 24 C 1.53034 * 109.52552 * 298.25821 * 23 12 11 25 25 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52441 * 59.86753 * 9 7 2 27 27 H 1.09005 * 109.50142 * 57.68544 * 10 9 7 28 28 H 1.08993 * 109.53791 * 297.58799 * 10 9 7 29 29 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 30 30 H 1.09005 * 109.44695 * 60.83538 * 11 10 9 31 31 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 32 32 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 33 33 H 1.08004 * 119.65154 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.09466 * 180.25986 * 16 15 14 35 35 H 1.07992 * 124.92334 * 179.97438 * 19 18 17 36 36 H 1.07999 * 126.90839 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.14596 * 0.02562 * 22 14 13 38 38 H 1.09006 * 109.46266 * 58.27078 * 23 12 11 39 39 H 1.09002 * 109.46276 * 178.24270 * 23 12 11 40 40 H 1.09006 * 109.50444 * 299.24199 * 24 23 12 41 41 H 1.09003 * 109.50687 * 179.12283 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 0.0606 12 7 0.6531 -5.0194 1.2770 13 6 0.0068 -6.3286 1.4389 14 6 -0.6223 -6.4127 2.8057 15 6 0.1125 -6.9074 3.8736 16 6 -0.4428 -6.9875 5.1326 17 6 -1.7555 -6.5801 5.3359 18 8 -2.5582 -6.5421 6.4183 19 6 -3.7698 -6.0539 6.0997 20 6 -3.8166 -5.7494 4.7956 21 6 -2.4961 -6.0851 4.2495 22 6 -1.9155 -6.0061 2.9845 23 6 -0.3405 -3.9383 1.2771 24 6 0.3751 -2.5858 1.2535 25 1 -0.4850 0.8401 0.0004 26 1 0.6226 -2.5569 -0.8882 27 1 2.8990 -3.5841 0.8689 28 1 2.8434 -3.6324 -0.9098 29 1 2.1803 -5.8160 0.0752 30 1 0.8315 -5.0703 -0.8151 31 1 0.7517 -7.1173 1.3326 32 1 -0.7627 -6.4506 0.6766 33 1 1.1318 -7.2288 3.7176 34 1 0.1393 -7.3703 5.9579 35 1 -4.5869 -5.9258 6.7941 36 1 -4.6569 -5.3397 4.2550 37 1 -2.4850 -5.6263 2.1492 38 1 -0.9756 -4.0286 0.3958 39 1 -0.9540 -4.0090 2.1754 40 1 0.9998 -2.4891 2.1415 41 1 -0.3629 -1.7838 1.2378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336486524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = 7.958470 kcal Electronic energy + Delta-G solvation = -22073.622351 eV Core-core repulsion = 18918.579025 eV Total energy + Delta-G solvation = -3155.043325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.32484 -40.24996 -38.68068 -35.75384 -33.75313 -33.55250 -31.59562 -31.31199 -30.25503 -28.11871 -26.08424 -24.00313 -23.69469 -23.29716 -22.22052 -21.89854 -20.33013 -18.44874 -18.36445 -17.90763 -17.08242 -16.85419 -16.43858 -16.27934 -15.80555 -15.12584 -14.91025 -14.69187 -14.64637 -14.28636 -14.03257 -13.99968 -13.55273 -13.30730 -13.09985 -12.89430 -12.73660 -12.62581 -12.50337 -12.21037 -11.96059 -11.84425 -11.81493 -11.33225 -11.12423 -10.79856 -10.63908 -10.36984 -9.51083 -9.17931 -9.07796 -8.07411 -6.20897 0.01789 0.35590 1.41103 1.42741 1.48421 1.50117 1.92034 2.44083 2.63895 3.19216 3.26861 3.55840 3.77078 3.84044 4.12300 4.24749 4.27164 4.32291 4.36867 4.43988 4.52023 4.55945 4.65692 4.72461 4.78812 4.81013 4.91672 4.98699 5.00369 5.11213 5.25126 5.26469 5.27784 5.36152 5.50873 5.57592 5.62509 5.65077 5.71183 6.00766 6.03680 6.22151 6.29029 6.35522 6.41477 6.91074 7.46898 8.97002 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003926 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.574996 B = 7130.405446 C = 7905.427838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.535 5.535 13 C 0.096 3.904 14 C -0.092 4.092 15 C -0.075 4.075 16 C -0.112 4.112 17 C 0.023 3.977 18 O -0.209 6.209 19 C 0.013 3.987 20 C -0.232 4.232 21 C -0.155 4.155 22 C -0.081 4.081 23 C 0.070 3.930 24 C -0.093 4.093 25 H 0.259 0.741 26 H -0.012 1.012 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.023 0.977 31 H 0.107 0.893 32 H 0.040 0.960 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.251 0.749 36 H 0.173 0.827 37 H 0.120 0.880 38 H 0.013 0.987 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -16.351 9.474 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.260 5.260 13 C -0.031 4.031 14 C -0.092 4.092 15 C -0.093 4.093 16 C -0.130 4.130 17 C -0.024 4.024 18 O -0.111 6.111 19 C -0.051 4.051 20 C -0.251 4.251 21 C -0.156 4.156 22 C -0.099 4.099 23 C -0.058 4.058 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.006 0.994 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.041 0.959 31 H 0.125 0.875 32 H 0.058 0.942 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.267 0.733 36 H 0.190 0.810 37 H 0.138 0.862 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.128 -16.247 10.103 19.808 hybrid contribution -0.574 1.382 -1.010 1.805 sum -5.703 -14.866 9.093 18.336 Atomic orbital electron populations 1.70021 1.07201 1.27054 1.51589 1.25748 0.95662 1.02378 0.94868 0.85701 0.78455 0.79211 0.78827 1.19534 1.20994 1.19774 1.21586 0.93040 0.92319 1.50293 0.93012 1.18660 0.93196 0.92801 0.92791 1.21543 0.97918 0.94005 1.00276 1.22086 0.96017 0.98523 0.89500 1.61952 1.23241 1.02471 1.38348 1.21081 0.97936 0.91795 0.92256 1.19502 0.93377 0.99839 0.96506 1.21071 1.00371 0.97546 0.90305 1.20222 0.90388 1.03498 0.98927 1.19989 0.94108 1.03298 0.84966 1.83984 1.22556 1.69826 1.34699 1.24779 0.86160 0.96937 0.97188 1.22866 0.97362 1.09189 0.95680 1.20283 0.95836 1.04638 0.94846 1.20298 0.95248 0.98980 0.95403 1.22034 0.93180 0.91878 0.98676 1.21397 0.99056 0.94637 0.98061 0.93156 0.99390 0.93049 0.92610 0.88599 0.95903 0.87487 0.94158 0.82462 0.82917 0.73295 0.80998 0.86165 0.96872 0.91666 0.95590 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 11.37 21.45 0.24 -54.21 16 2 C 0.01 0.66 5.31 84.65 0.45 1.11 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.53 -30.31 8.56 25.60 0.22 -30.10 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.27 2.16 -11.46 -0.02 2.25 16 10 C -0.10 -4.15 5.32 30.65 0.16 -3.98 16 11 C 0.07 2.22 5.46 86.33 0.47 2.69 16 12 N -0.54 -18.28 4.65 -900.93 -4.19 -22.47 16 13 C 0.10 2.55 5.11 85.56 0.44 2.98 16 14 C -0.09 -2.47 4.87 -20.10 -0.10 -2.57 16 15 C -0.07 -1.77 9.66 22.30 0.22 -1.56 16 16 C -0.11 -2.66 10.07 22.34 0.23 -2.44 16 17 C 0.02 0.64 7.42 22.99 0.17 0.81 16 18 O -0.21 -5.09 10.58 -9.02 -0.10 -5.19 16 19 C 0.01 0.24 11.96 66.85 0.80 1.04 16 20 C -0.23 -5.18 11.14 23.54 0.26 -4.91 16 21 C -0.16 -4.36 6.40 -20.21 -0.13 -4.48 16 22 C -0.08 -2.31 7.84 22.20 0.17 -2.13 16 23 C 0.07 2.84 5.14 86.33 0.44 3.28 16 24 C -0.09 -4.65 5.12 30.65 0.16 -4.49 16 25 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 26 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 27 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 2.56 8.01 -2.39 -0.02 2.54 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.11 2.25 7.93 -2.39 -0.02 2.23 16 32 H 0.04 1.06 8.06 -2.39 -0.02 1.04 16 33 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.25 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.12 3.39 7.93 -2.91 -0.02 3.36 16 38 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.06 2.56 5.74 -2.39 -0.01 2.55 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 Total: -1.00 -67.83 329.98 2.93 -64.90 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.01 Total: 12.85 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.94 Total: -42.49 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.94 Total: -76.68 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.10 Total: -5.19 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.83 2.93 -64.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336486524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.856 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds