Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48497 * 109.46955 * 239.99739 * 3 2 1 5 5 H 1.48494 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47155 * 119.99762 * 3 2 1 7 7 C 1.37882 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99400 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47777 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99686 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46827 * 125.00784 * 180.89335 * 13 11 10 15 15 C 1.52909 * 104.78751 * 179.84373 * 14 13 11 16 16 C 1.52883 * 115.75715 * 129.13362 * 15 14 13 17 17 C 1.53947 * 86.81286 * 92.78346 * 16 15 14 18 18 C 1.52907 * 115.70374 * 230.04926 * 15 14 13 19 19 C 1.50416 * 105.50396 * 359.55320 * 15 14 13 20 20 C 1.38184 * 131.57424 * 179.97438 * 19 15 14 21 21 C 1.38203 * 120.24925 * 179.62374 * 20 19 15 22 22 C 1.38306 * 119.83387 * 0.28098 * 21 20 19 23 23 C 1.37836 * 120.18924 * 0.03292 * 22 21 20 24 24 C 1.38830 * 108.09431 * 0.15131 * 19 15 14 25 25 H 0.96999 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47732 * 59.99469 * 9 7 2 27 27 H 1.09002 * 109.47036 * 299.99410 * 9 7 2 28 28 H 1.09001 * 109.47370 * 59.99370 * 10 9 7 29 29 H 1.09003 * 109.47152 * 299.99647 * 10 9 7 30 30 H 1.08993 * 110.82005 * 60.78400 * 14 13 11 31 31 H 1.09003 * 110.01536 * 298.49287 * 14 13 11 32 32 H 1.09000 * 113.65548 * 207.26361 * 16 15 14 33 33 H 1.08999 * 113.65990 * 338.29882 * 16 15 14 34 34 H 1.08998 * 113.58620 * 270.16965 * 17 16 15 35 35 H 1.09005 * 113.65664 * 139.36713 * 17 16 15 36 36 H 1.09001 * 113.65476 * 21.64052 * 18 15 14 37 37 H 1.08995 * 113.65922 * 152.59626 * 18 15 14 38 38 H 1.08002 * 119.88002 * 359.90436 * 20 19 15 39 39 H 1.07999 * 120.08462 * 180.30417 * 21 20 19 40 40 H 1.08002 * 119.90612 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.82424 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0021 13 7 2.1655 -6.1344 0.0008 14 6 1.5452 -7.4651 -0.0175 15 6 2.7203 -8.4435 -0.0140 16 6 2.6639 -9.5459 1.0437 17 6 1.9801 -10.4177 -0.0251 18 6 2.6748 -9.5383 -1.0805 19 6 3.9567 -7.5869 -0.0050 20 6 5.2992 -7.9144 0.0017 21 6 6.2585 -6.9196 0.0017 22 6 5.8725 -5.5915 0.0009 23 6 4.5350 -5.2584 0.0008 24 6 3.5596 -6.2566 0.0002 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8717 -3.6044 -0.8895 30 1 0.9423 -7.5992 -0.9155 31 1 0.9333 -7.6037 0.8739 32 1 3.6448 -9.9129 1.3457 33 1 2.0205 -9.3070 1.8906 34 1 0.8937 -10.3294 -0.0303 35 1 2.3203 -11.4533 -0.0279 36 1 2.0400 -9.2932 -1.9320 37 1 3.6588 -9.9021 -1.3761 38 1 5.5999 -8.9517 0.0023 39 1 7.3070 -7.1786 0.0019 40 1 6.6213 -4.8132 0.0005 41 1 4.2403 -4.2195 0.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336562822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = 15.515445 kcal Electronic energy + Delta-G solvation = -22248.536992 eV Core-core repulsion = 19093.821362 eV Total energy + Delta-G solvation = -3154.715630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58085 -38.93255 -37.99538 -35.45795 -33.62526 -31.78912 -30.59755 -29.57411 -28.35092 -26.00105 -25.74630 -23.72138 -23.20372 -21.77605 -21.17661 -19.53738 -18.58875 -17.13518 -16.56674 -15.97831 -15.92889 -15.79906 -15.26193 -14.63529 -14.45290 -14.19406 -14.09547 -13.66677 -13.36352 -13.03263 -12.56607 -12.43228 -12.32495 -12.20706 -11.85511 -11.75540 -11.61437 -10.94834 -10.93655 -10.82537 -10.70487 -10.59569 -10.33277 -10.19778 -10.01936 -9.70506 -9.33792 -9.12633 -8.78970 -8.35158 -7.68937 -5.98896 -4.03839 1.30324 1.38574 2.96157 3.02613 3.33437 3.38193 3.39863 3.75737 4.14571 4.29832 4.44656 4.46475 4.53389 4.63187 4.93386 4.99283 5.05340 5.22350 5.36201 5.38288 5.47313 5.49688 5.55836 5.58240 5.59737 5.63104 5.70327 5.76834 5.92468 5.98120 6.06951 6.08038 6.13606 6.24964 6.47142 6.51401 6.57966 6.79448 6.98074 7.67039 7.69093 7.78296 8.01493 8.29403 8.46106 9.03205 9.59930 11.12084 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.004161 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.128930 B = 6727.755466 C = 7778.275870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.132 4.132 11 C 0.521 3.479 12 O -0.510 6.510 13 N -0.563 5.563 14 C 0.128 3.872 15 C -0.051 4.051 16 C -0.120 4.120 17 C -0.142 4.142 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.072 4.072 21 C -0.153 4.153 22 C -0.084 4.084 23 C -0.163 4.163 24 C 0.162 3.838 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -20.838 -0.055 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.171 4.171 11 C 0.313 3.687 12 O -0.383 6.383 13 N -0.287 5.287 14 C 0.006 3.994 15 C -0.051 4.051 16 C -0.158 4.158 17 C -0.179 4.179 18 C -0.158 4.158 19 C -0.133 4.133 20 C -0.091 4.091 21 C -0.172 4.172 22 C -0.102 4.102 23 C -0.183 4.183 24 C 0.066 3.934 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.008 -20.593 -0.048 22.896 hybrid contribution 0.457 0.947 -0.007 1.051 sum 10.464 -19.646 -0.055 22.259 Atomic orbital electron populations 1.69985 1.06088 1.26791 1.49902 1.25016 0.94828 0.99248 0.95160 0.86634 0.79553 0.83057 0.78607 1.20184 1.21256 1.20176 1.21135 0.92909 0.90822 1.51829 0.92535 1.18954 0.93137 0.89305 0.98751 1.22241 1.00976 0.91183 1.02730 1.21700 0.88392 0.84524 0.74075 1.90698 1.14000 1.86862 1.46724 1.46429 1.04459 1.07092 1.70687 1.21701 0.94445 0.79969 1.03277 1.20697 0.91872 0.93362 0.99165 1.22885 1.01521 0.94974 0.96372 1.22936 1.00265 0.98547 0.96172 1.22892 1.01497 0.95026 0.96363 1.19705 0.93938 0.92631 1.06989 1.20241 0.90499 0.99247 0.99105 1.20945 0.98995 0.92785 1.04519 1.20926 0.95041 0.96479 0.97778 1.21381 0.91816 1.00106 1.04995 1.18498 0.83431 0.94592 0.96906 0.92830 0.95711 0.95693 0.89373 0.89370 0.89937 0.90005 0.89456 0.90917 0.89891 0.91145 0.90929 0.89453 0.86321 0.85934 0.85404 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.78 3.47 -27.89 -0.10 -2.88 16 11 C 0.52 10.78 7.80 -10.99 -0.09 10.70 16 12 O -0.51 -12.31 16.27 5.55 0.09 -12.22 16 13 N -0.56 -9.52 3.14 -113.07 -0.35 -9.87 16 14 C 0.13 1.77 6.43 -3.91 -0.03 1.75 16 15 C -0.05 -0.56 1.17 -155.96 -0.18 -0.74 16 16 C -0.12 -1.06 7.35 -26.30 -0.19 -1.25 16 17 C -0.14 -1.08 7.94 -25.75 -0.20 -1.28 16 18 C -0.12 -1.06 7.35 -26.29 -0.19 -1.26 16 19 C -0.13 -1.62 5.48 -104.56 -0.57 -2.19 16 20 C -0.07 -0.76 10.03 -39.61 -0.40 -1.16 16 21 C -0.15 -1.58 10.06 -39.57 -0.40 -1.97 16 22 C -0.08 -0.98 10.02 -39.70 -0.40 -1.37 16 23 C -0.16 -2.32 8.88 -39.23 -0.35 -2.67 16 24 C 0.16 2.45 6.60 -83.44 -0.55 1.90 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.09 1.72 6.91 -51.93 -0.36 1.36 16 29 H 0.09 1.72 6.91 -51.93 -0.36 1.36 16 30 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 31 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.15 2.21 4.21 -52.49 -0.22 1.99 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -33.20 333.29 -9.61 -42.81 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.91 Total: -0.50 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -4.18 Total: -15.19 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.38 Total: -36.48 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.20 -9.61 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336562822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.326 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds