Wall clock time and date at job start Tue Mar 31 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48497 * 109.46955 * 239.99739 * 3 2 1 5 5 H 1.48494 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47155 * 119.99762 * 3 2 1 7 7 C 1.37882 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99400 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47777 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99686 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46827 * 125.00784 * 180.89335 * 13 11 10 15 15 C 1.52909 * 104.78751 * 179.84373 * 14 13 11 16 16 C 1.52883 * 115.75715 * 129.13362 * 15 14 13 17 17 C 1.53947 * 86.81286 * 92.78346 * 16 15 14 18 18 C 1.52907 * 115.70374 * 230.04926 * 15 14 13 19 19 C 1.50416 * 105.50396 * 359.55320 * 15 14 13 20 20 C 1.38184 * 131.57424 * 179.97438 * 19 15 14 21 21 C 1.38203 * 120.24925 * 179.62374 * 20 19 15 22 22 C 1.38306 * 119.83387 * 0.28098 * 21 20 19 23 23 C 1.37836 * 120.18924 * 0.03292 * 22 21 20 24 24 C 1.38830 * 108.09431 * 0.15131 * 19 15 14 25 25 H 0.96999 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47732 * 59.99469 * 9 7 2 27 27 H 1.09002 * 109.47036 * 299.99410 * 9 7 2 28 28 H 1.09001 * 109.47370 * 59.99370 * 10 9 7 29 29 H 1.09003 * 109.47152 * 299.99647 * 10 9 7 30 30 H 1.08993 * 110.82005 * 60.78400 * 14 13 11 31 31 H 1.09003 * 110.01536 * 298.49287 * 14 13 11 32 32 H 1.09000 * 113.65548 * 207.26361 * 16 15 14 33 33 H 1.08999 * 113.65990 * 338.29882 * 16 15 14 34 34 H 1.08998 * 113.58620 * 270.16965 * 17 16 15 35 35 H 1.09005 * 113.65664 * 139.36713 * 17 16 15 36 36 H 1.09001 * 113.65476 * 21.64052 * 18 15 14 37 37 H 1.08995 * 113.65922 * 152.59626 * 18 15 14 38 38 H 1.08002 * 119.88002 * 359.90436 * 20 19 15 39 39 H 1.07999 * 120.08462 * 180.30417 * 21 20 19 40 40 H 1.08002 * 119.90612 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.82424 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0021 13 7 2.1655 -6.1344 0.0008 14 6 1.5452 -7.4651 -0.0175 15 6 2.7203 -8.4435 -0.0140 16 6 2.6639 -9.5459 1.0437 17 6 1.9801 -10.4177 -0.0251 18 6 2.6748 -9.5383 -1.0805 19 6 3.9567 -7.5869 -0.0050 20 6 5.2992 -7.9144 0.0017 21 6 6.2585 -6.9196 0.0017 22 6 5.8725 -5.5915 0.0009 23 6 4.5350 -5.2584 0.0008 24 6 3.5596 -6.2566 0.0002 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8717 -3.6044 -0.8895 30 1 0.9423 -7.5992 -0.9155 31 1 0.9333 -7.6037 0.8739 32 1 3.6448 -9.9129 1.3457 33 1 2.0205 -9.3070 1.8906 34 1 0.8937 -10.3294 -0.0303 35 1 2.3203 -11.4533 -0.0279 36 1 2.0400 -9.2932 -1.9320 37 1 3.6588 -9.9021 -1.3761 38 1 5.5999 -8.9517 0.0023 39 1 7.3070 -7.1786 0.0019 40 1 6.6213 -4.8132 0.0005 41 1 4.2403 -4.2195 0.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336562822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:14 Heat of formation + Delta-G solvation = -3.055501 kcal Electronic energy + Delta-G solvation = -22249.342289 eV Core-core repulsion = 19093.821362 eV Total energy + Delta-G solvation = -3155.520927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.64754 -40.34157 -38.90310 -36.68110 -35.71529 -33.48124 -31.92155 -30.62534 -29.58467 -27.57708 -26.68141 -24.95705 -24.31717 -23.12857 -22.45840 -20.89652 -19.46574 -18.90441 -17.80021 -17.59768 -17.33381 -16.86080 -16.44876 -16.09357 -15.71319 -15.64600 -15.08476 -14.86013 -14.58889 -14.27016 -14.16132 -13.89429 -13.54203 -13.19939 -13.10353 -12.86089 -12.77859 -12.64859 -12.57226 -12.15273 -12.07358 -11.63684 -11.54093 -11.43172 -11.37462 -11.28484 -11.17469 -10.97764 -10.59738 -9.70227 -8.81648 -8.21514 -6.36507 0.26990 0.44514 1.40578 1.45621 1.50794 1.53281 1.66782 2.40653 2.82214 3.11493 3.20038 3.40403 3.62495 3.65346 3.75260 3.91536 4.09392 4.21019 4.26389 4.30601 4.40292 4.45178 4.54152 4.54978 4.60240 4.64167 4.82834 4.85414 4.87167 5.06618 5.07603 5.10600 5.17844 5.28043 5.41274 5.47475 5.49697 5.53415 5.59101 5.66493 5.76775 6.03427 6.10663 6.33440 6.77598 6.88017 7.33850 8.91239 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.004161 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.128930 B = 6727.755466 C = 7778.275870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.518 3.482 12 O -0.563 6.563 13 N -0.560 5.560 14 C 0.120 3.880 15 C -0.056 4.056 16 C -0.115 4.115 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.137 4.137 22 C -0.090 4.090 23 C -0.179 4.179 24 C 0.115 3.885 25 H 0.264 0.736 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 -22.707 -0.067 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.153 4.153 11 C 0.310 3.690 12 O -0.441 6.441 13 N -0.283 5.283 14 C -0.001 4.001 15 C -0.057 4.057 16 C -0.152 4.152 17 C -0.169 4.169 18 C -0.152 4.152 19 C -0.126 4.126 20 C -0.088 4.088 21 C -0.155 4.155 22 C -0.108 4.108 23 C -0.200 4.200 24 C 0.021 3.979 25 H 0.073 0.927 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.238 -22.516 -0.059 26.640 hybrid contribution -0.739 1.424 -0.003 1.604 sum 13.500 -21.092 -0.062 25.042 Atomic orbital electron populations 1.70170 1.08362 1.28033 1.51066 1.26145 0.95735 1.03972 0.94334 0.85341 0.78071 0.77085 0.79576 1.18578 1.21182 1.18570 1.21606 0.93987 0.91295 1.51475 0.90521 1.18721 0.93514 0.92231 0.94912 1.21969 0.99464 0.89673 1.04228 1.21445 0.87692 0.85735 0.74109 1.90662 1.15843 1.87743 1.49862 1.46226 1.05808 1.06797 1.69433 1.21916 0.95932 0.79462 1.02817 1.20789 0.89697 0.93281 1.01884 1.22927 1.02574 0.93900 0.95823 1.22897 0.99979 0.99396 0.94674 1.22933 1.02569 0.93950 0.95778 1.20012 0.95334 0.91476 1.05814 1.20675 0.89254 1.01262 0.97646 1.21425 1.00832 0.91834 1.01425 1.21230 0.94087 0.98185 0.97300 1.21426 0.93166 0.99253 1.06113 1.18836 0.82234 0.96446 1.00428 0.92719 0.99714 0.99705 0.87769 0.87754 0.90443 0.90583 0.87566 0.91669 0.90307 0.88925 0.91650 0.87563 0.82749 0.82304 0.83321 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 9 C 0.04 2.54 4.26 29.84 0.13 2.67 16 10 C -0.11 -5.10 3.47 29.84 0.10 -4.99 16 11 C 0.52 23.04 7.80 87.66 0.68 23.72 16 12 O -0.56 -29.72 16.27 -3.05 -0.05 -29.77 16 13 N -0.56 -19.81 3.14 -630.02 -1.98 -21.79 16 14 C 0.12 3.45 6.43 86.29 0.55 4.01 16 15 C -0.06 -1.15 1.17 -53.12 -0.06 -1.21 16 16 C -0.11 -1.74 7.35 30.88 0.23 -1.51 16 17 C -0.13 -1.64 7.94 31.23 0.25 -1.39 16 18 C -0.11 -1.73 7.35 30.88 0.23 -1.50 16 19 C -0.12 -2.82 5.48 -19.82 -0.11 -2.93 16 20 C -0.07 -1.16 10.03 22.25 0.22 -0.94 16 21 C -0.14 -2.17 10.06 22.28 0.22 -1.94 16 22 C -0.09 -1.83 10.02 22.19 0.22 -1.61 16 23 C -0.18 -4.98 8.88 22.49 0.20 -4.78 16 24 C 0.12 3.44 6.60 38.31 0.25 3.69 16 25 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 26 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 27 H -0.02 -1.01 8.10 -2.39 -0.02 -1.02 16 28 H 0.10 4.25 6.91 -2.39 -0.02 4.24 16 29 H 0.10 4.26 6.91 -2.39 -0.02 4.24 16 30 H 0.08 2.25 7.77 -2.39 -0.02 2.23 16 31 H 0.08 2.22 7.77 -2.39 -0.02 2.20 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.13 3.94 4.21 -2.91 -0.01 3.93 16 Total: -1.00 -77.68 333.29 5.12 -72.56 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.02 Total: 12.13 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.82 Total: -19.99 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.69 Total: -81.56 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.68 5.12 -72.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336562822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.506 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds