Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.52994 * 109.47325 * 239.99633 * 2 1 3 5 5 C 1.50706 * 109.46903 * 60.00028 * 4 2 1 6 6 H 1.08005 * 119.99816 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47282 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47344 * 120.00077 * 9 7 5 12 12 H 1.48495 * 109.47329 * 240.00234 * 9 7 5 13 13 C 1.53001 * 109.46950 * 120.00013 * 2 1 3 14 14 N 1.46499 * 109.46981 * 299.99876 * 13 2 1 15 15 C 1.31434 * 119.99973 * 114.59431 * 14 13 2 16 16 N 1.37794 * 120.92358 * 353.99602 * 15 14 13 17 17 H 0.96992 * 120.65024 * 0.05126 * 16 15 14 18 18 C 1.36549 * 118.69827 * 180.02562 * 16 15 14 19 19 C 1.34883 * 120.72648 * 0.03206 * 18 16 15 20 20 N 1.33321 * 122.05140 * 359.96679 * 19 18 16 21 21 C 1.30798 * 121.21005 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.41704 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.46999 * 30.00076 * 22 21 20 24 24 F 1.39898 * 109.47363 * 149.99950 * 22 21 20 25 25 H 1.09003 * 109.47490 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.47428 * 60.00042 * 1 2 3 27 27 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47377 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47091 * 299.99945 * 3 2 1 30 30 H 1.09002 * 109.47193 * 60.00078 * 3 2 1 31 31 H 1.08999 * 109.47540 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47554 * 300.00178 * 4 2 1 33 33 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47146 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47450 * 59.99842 * 13 2 1 36 36 H 1.08003 * 119.64056 * 180.02562 * 18 16 15 37 37 H 1.08003 * 118.97168 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47318 * 270.00198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5376 -0.0109 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3993 -5.2571 10 1 0.4245 1.5663 -4.8530 11 1 2.4044 0.8661 -6.0650 12 1 0.4244 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 0.7107 -0.6341 3.2555 16 7 0.1810 -1.8657 2.9370 17 1 0.4216 -2.3080 2.1080 18 6 -0.6889 -2.4513 3.8115 19 6 -1.0246 -1.8375 4.9647 20 7 -0.5300 -0.6463 5.3022 21 6 0.3095 -0.0154 4.5224 22 6 0.8572 1.3307 4.9213 23 9 0.9251 1.4117 6.3163 24 9 2.1379 1.4916 4.3819 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 2.8622 -1.8819 -4.7336 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 -1.1129 -3.4167 3.5774 37 1 -1.7149 -2.3266 5.6360 38 1 0.2025 2.1159 4.5432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340906936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -41.495648 kcal Electronic energy + Delta-G solvation = -22898.165703 eV Core-core repulsion = 19219.041107 eV Total energy + Delta-G solvation = -3679.124596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.77594 -46.77140 -40.88648 -37.55195 -35.40617 -34.01791 -32.35184 -30.22692 -27.27972 -27.14037 -26.54186 -26.30764 -23.67449 -22.94514 -21.75241 -19.06703 -18.36805 -17.78806 -17.39414 -16.91286 -16.41051 -16.16947 -15.35567 -15.01814 -14.78777 -14.52341 -13.80392 -13.74034 -13.59821 -13.52581 -13.08895 -12.80017 -12.67584 -12.17506 -12.08004 -11.88654 -11.38474 -11.20194 -11.01261 -10.96424 -10.82054 -10.60323 -10.26971 -10.12312 -10.08171 -9.82505 -9.45394 -8.95745 -8.94242 -8.39442 -7.47289 -6.03665 -4.04194 0.42174 1.72998 2.58474 3.27585 3.27940 3.35906 3.39314 3.46753 3.87025 4.18601 4.40944 4.46450 4.54328 4.93237 4.98624 5.23442 5.30208 5.33924 5.47534 5.69879 5.82615 5.88580 6.00702 6.27277 6.33761 6.46162 6.59609 6.64136 6.71358 6.75935 7.08597 7.19255 7.21743 7.54198 7.58879 7.72861 7.95051 8.01492 8.39873 9.00907 9.59279 11.07876 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.004043 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.348346 B = 6923.782664 C = 7478.061544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.054 4.054 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.523 5.523 15 C 0.334 3.666 16 N -0.626 5.626 17 H 0.425 0.575 18 C 0.131 3.869 19 C -0.088 4.088 20 N -0.383 5.383 21 C 0.067 3.933 22 C 0.349 3.651 23 F -0.194 7.194 24 F -0.172 7.172 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.017 0.983 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 -0.778 17.040 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.055 4.055 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.072 4.072 14 N -0.248 5.248 15 C 0.060 3.940 16 N -0.249 5.249 17 H 0.266 0.734 18 C -0.002 4.002 19 C -0.230 4.230 20 N -0.092 5.092 21 C -0.109 4.109 22 C 0.294 3.706 23 F -0.175 7.175 24 F -0.153 7.153 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.824 0.093 17.512 18.795 hybrid contribution -0.213 -1.328 -2.303 2.667 sum -7.038 -1.234 15.209 16.804 Atomic orbital electron populations 1.21737 0.95992 0.99753 1.00690 1.20687 0.94676 0.96519 0.93581 1.21596 1.00014 0.95404 1.00392 1.19149 0.96313 0.94773 0.90146 1.21249 1.30861 1.11982 0.90504 0.92214 1.25010 0.95320 0.95091 0.99095 1.69969 1.37219 1.23225 1.23293 0.86596 0.78668 0.79738 0.83385 1.19739 1.21043 1.21172 1.22261 1.00524 0.94338 0.90075 1.73342 1.14133 1.30136 1.07168 1.21704 0.94226 0.82738 0.95289 1.43264 1.40153 1.19401 1.22053 0.73352 1.22869 0.88822 0.98193 0.90334 1.21423 1.09090 0.94194 0.98246 1.67291 1.04258 1.07448 1.30230 1.23116 0.99652 0.98126 0.90001 1.19587 0.82844 0.93344 0.74799 1.93014 1.96726 1.97119 1.30654 1.93112 1.40697 1.96138 1.85354 0.94995 0.91514 0.94833 0.93840 0.92454 0.93786 0.96448 0.97101 0.93152 0.89633 0.95953 0.81532 0.81509 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 2 C -0.05 -1.07 0.60 -154.51 -0.09 -1.16 16 3 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.64 7.65 -34.44 -0.26 -13.90 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.06 1.00 5.18 -4.04 -0.02 0.98 16 14 N -0.52 -8.43 7.28 -58.70 -0.43 -8.86 16 15 C 0.33 4.66 7.38 -153.97 -1.14 3.53 16 16 N -0.63 -6.98 5.33 -10.68 -0.06 -7.04 16 17 H 0.42 4.59 6.43 -40.82 -0.26 4.33 16 18 C 0.13 1.07 11.18 -16.64 -0.19 0.88 16 19 C -0.09 -0.83 11.01 -18.10 -0.20 -1.03 16 20 N -0.38 -4.72 10.06 -8.00 -0.08 -4.80 16 21 C 0.07 0.89 6.81 -79.67 -0.54 0.35 16 22 C 0.35 4.31 5.69 36.00 0.20 4.52 16 23 F -0.19 -2.52 17.09 2.25 0.04 -2.48 16 24 F -0.17 -2.54 15.53 2.25 0.03 -2.50 16 25 H 0.03 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.20 6.62 -51.93 -0.34 0.85 16 30 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.02 0.35 5.59 -51.93 -0.29 0.06 16 36 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.84 319.82 -6.64 -38.49 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.84 Total: -0.62 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.85 Total: -7.70 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.17 Total: -46.28 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.84 -6.64 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340906936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.010 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds