Wall clock time and date at job start Tue Mar 31 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 C 1.52994 * 109.47325 * 239.99633 * 2 1 3 5 5 C 1.50706 * 109.46903 * 60.00028 * 4 2 1 6 6 H 1.08005 * 119.99816 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47282 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47344 * 120.00077 * 9 7 5 12 12 H 1.48495 * 109.47329 * 240.00234 * 9 7 5 13 13 C 1.53001 * 109.46950 * 120.00013 * 2 1 3 14 14 N 1.46499 * 109.46981 * 299.99876 * 13 2 1 15 15 C 1.31434 * 119.99973 * 114.59431 * 14 13 2 16 16 N 1.37794 * 120.92358 * 353.99602 * 15 14 13 17 17 H 0.96992 * 120.65024 * 0.05126 * 16 15 14 18 18 C 1.36549 * 118.69827 * 180.02562 * 16 15 14 19 19 C 1.34883 * 120.72648 * 0.03206 * 18 16 15 20 20 N 1.33321 * 122.05140 * 359.96679 * 19 18 16 21 21 C 1.30798 * 121.21005 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.41704 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.46999 * 30.00076 * 22 21 20 24 24 F 1.39898 * 109.47363 * 149.99950 * 22 21 20 25 25 H 1.09003 * 109.47490 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.47428 * 60.00042 * 1 2 3 27 27 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47377 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47091 * 299.99945 * 3 2 1 30 30 H 1.09002 * 109.47193 * 60.00078 * 3 2 1 31 31 H 1.08999 * 109.47540 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47554 * 300.00178 * 4 2 1 33 33 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47146 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47450 * 59.99842 * 13 2 1 36 36 H 1.08003 * 119.64056 * 180.02562 * 18 16 15 37 37 H 1.08003 * 118.97168 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47318 * 270.00198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5376 -0.0109 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3993 -5.2571 10 1 0.4245 1.5663 -4.8530 11 1 2.4044 0.8661 -6.0650 12 1 0.4244 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 0.7107 -0.6341 3.2555 16 7 0.1810 -1.8657 2.9370 17 1 0.4216 -2.3080 2.1080 18 6 -0.6889 -2.4513 3.8115 19 6 -1.0246 -1.8375 4.9647 20 7 -0.5300 -0.6463 5.3022 21 6 0.3095 -0.0154 4.5224 22 6 0.8572 1.3307 4.9213 23 9 0.9251 1.4117 6.3163 24 9 2.1379 1.4916 4.3819 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 2.8622 -1.8819 -4.7336 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 -1.1129 -3.4167 3.5774 37 1 -1.7149 -2.3266 5.6360 38 1 0.2025 2.1159 4.5432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340906936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:45 Heat of formation + Delta-G solvation = -61.205280 kcal Electronic energy + Delta-G solvation = -22899.020377 eV Core-core repulsion = 19219.041107 eV Total energy + Delta-G solvation = -3679.979269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.75214 -47.76840 -41.81426 -38.98903 -36.54821 -35.16869 -34.24592 -31.29410 -29.03879 -28.15722 -27.97931 -27.71373 -25.34275 -23.97999 -22.99842 -19.95740 -19.71501 -18.97786 -18.38819 -18.30561 -17.82107 -17.33794 -16.65408 -16.23744 -16.01153 -15.63942 -15.26222 -15.09241 -14.73737 -14.60461 -14.30144 -14.09885 -13.98315 -13.79535 -13.62021 -13.00022 -12.85830 -12.72059 -12.65342 -12.55766 -12.34157 -12.21490 -12.04705 -11.56628 -11.43331 -11.07888 -10.98347 -10.79071 -10.53691 -10.22093 -8.44939 -8.16281 -6.23737 -0.42170 0.76836 1.37981 1.40265 1.51527 1.67540 2.39686 2.41824 2.61365 2.95580 3.17335 3.29910 3.53701 3.94835 3.99935 4.03735 4.13351 4.18751 4.29918 4.41736 4.48974 4.52610 4.80227 4.85112 4.99063 5.09067 5.11411 5.13144 5.42216 5.45751 5.47334 5.50731 5.58321 5.79164 5.85085 5.88014 6.31079 6.68547 6.89841 6.96931 7.43811 8.95245 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.004043 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.348346 B = 6923.782664 C = 7478.061544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.050 4.050 3 C -0.108 4.108 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.070 3.930 14 N -0.561 5.561 15 C 0.345 3.655 16 N -0.623 5.623 17 H 0.427 0.573 18 C 0.151 3.849 19 C -0.100 4.100 20 N -0.385 5.385 21 C 0.029 3.971 22 C 0.346 3.654 23 F -0.201 7.201 24 F -0.190 7.190 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.059 0.941 31 H -0.015 1.015 32 H -0.008 1.008 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.220 0.780 37 H 0.202 0.798 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -1.466 17.978 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.165 4.165 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.206 1.206 13 C -0.060 4.060 14 N -0.287 5.287 15 C 0.072 3.928 16 N -0.245 5.245 17 H 0.269 0.731 18 C 0.018 3.982 19 C -0.242 4.242 20 N -0.095 5.095 21 C -0.145 4.145 22 C 0.291 3.709 23 F -0.182 7.182 24 F -0.171 7.171 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.011 0.989 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.237 0.763 37 H 0.218 0.782 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.144 -0.573 18.470 20.617 hybrid contribution 0.383 -1.293 -2.440 2.788 sum -8.761 -1.866 16.029 18.362 Atomic orbital electron populations 1.21572 0.94658 1.00195 1.00425 1.20525 0.95634 0.96087 0.92835 1.21494 0.99258 0.95527 1.00253 1.19003 0.94196 0.94181 0.92189 1.21606 1.30317 1.11905 0.91464 0.91926 1.25853 0.95623 0.95850 1.02370 1.70095 1.38684 1.24837 1.24032 0.85563 0.78151 0.78841 0.79520 1.18719 1.20922 1.20586 1.21899 0.99456 0.94726 0.89903 1.73349 1.17076 1.30809 1.07489 1.21906 0.92742 0.83248 0.94914 1.43447 1.39808 1.18649 1.22550 0.73055 1.23699 0.86348 0.99339 0.88766 1.22129 1.09359 0.93387 0.99339 1.67291 1.03522 1.08529 1.30137 1.23008 1.01917 0.99158 0.90379 1.19910 0.82314 0.94350 0.74314 1.92988 1.96722 1.97198 1.31335 1.93068 1.42158 1.96283 1.85623 0.93372 0.93420 0.94014 0.94927 0.94006 0.92220 0.99638 0.98948 0.93096 0.91614 0.94792 0.76315 0.78179 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 2 C -0.05 -2.01 0.60 -52.18 -0.03 -2.04 16 3 C -0.11 -4.34 8.06 71.98 0.58 -3.76 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -28.07 7.65 25.60 0.20 -27.88 16 6 H 0.06 3.32 5.68 -2.91 -0.02 3.31 16 7 C 0.00 0.00 5.46 84.65 0.46 0.47 16 8 N -0.94 -55.93 13.29 21.45 0.28 -55.64 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.07 2.45 5.18 86.38 0.45 2.90 16 14 N -0.56 -17.78 7.28 -339.62 -2.47 -20.25 16 15 C 0.34 9.06 7.38 135.72 1.00 10.07 16 16 N -0.62 -12.06 5.33 -187.71 -1.00 -13.06 16 17 H 0.43 8.07 6.43 -92.71 -0.60 7.48 16 18 C 0.15 1.76 11.18 83.19 0.93 2.69 16 19 C -0.10 -1.46 11.01 83.70 0.92 -0.53 16 20 N -0.38 -8.50 10.06 -179.24 -1.80 -10.31 16 21 C 0.03 0.72 6.81 44.89 0.31 1.02 16 22 C 0.35 8.30 5.69 71.24 0.41 8.71 16 23 F -0.20 -5.12 17.09 44.97 0.77 -4.36 16 24 F -0.19 -5.64 15.53 44.97 0.70 -4.95 16 25 H 0.05 1.58 7.45 -2.39 -0.02 1.56 16 26 H 0.05 1.89 6.62 -2.38 -0.02 1.87 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 30 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.03 1.05 5.59 -2.39 -0.01 1.04 16 36 H 0.22 0.25 8.06 -2.91 -0.02 0.22 16 37 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -70.70 319.82 4.92 -65.78 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.49 Total: 6.43 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.92 Total: -9.56 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -4.99 Total: -99.26 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 1.47 Total: -9.30 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.70 4.92 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340906936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.579 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds