Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53005 * 109.46758 * 240.00158 * 2 1 3 5 5 C 1.50699 * 109.46925 * 60.00059 * 4 2 1 6 6 H 1.08002 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00120 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47390 * 60.00037 * 9 7 5 11 11 H 1.48504 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47009 * 299.99362 * 9 7 5 13 13 C 1.52994 * 109.47211 * 120.00571 * 2 1 3 14 14 N 1.46504 * 109.47251 * 299.99662 * 13 2 1 15 15 C 1.38405 * 120.00292 * 180.02562 * 14 13 2 16 16 N 1.32511 * 119.21307 * 359.97438 * 15 14 13 17 17 C 1.32269 * 120.73564 * 179.97438 * 16 15 14 18 18 C 1.38629 * 119.19530 * 0.02562 * 17 16 15 19 19 C 1.38580 * 118.55892 * 0.25192 * 18 17 16 20 20 C 1.50703 * 120.39895 * 179.74568 * 19 18 17 21 21 F 1.39901 * 109.46977 * 299.99905 * 20 19 18 22 22 F 1.39899 * 109.47096 * 59.99727 * 20 19 18 23 23 N 1.32296 * 119.19594 * 359.51034 * 19 18 17 24 24 H 1.09001 * 109.46410 * 299.99390 * 1 2 3 25 25 H 1.08998 * 109.47171 * 59.99603 * 1 2 3 26 26 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47142 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47192 * 300.01010 * 3 2 1 29 29 H 1.09005 * 109.46850 * 60.00003 * 3 2 1 30 30 H 1.08996 * 109.46861 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.47192 * 300.00221 * 4 2 1 32 32 H 0.96998 * 120.00141 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47089 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.47212 * 59.99973 * 13 2 1 35 35 H 0.96998 * 119.99648 * 0.02562 * 14 13 2 36 36 H 1.08002 * 120.39781 * 180.02562 * 17 16 15 37 37 H 1.08002 * 120.71605 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46814 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6279 -1.5501 -3.8528 9 14 1.2489 0.3997 -5.2571 10 1 1.7439 1.7997 -5.2566 11 1 1.7447 -0.2996 -6.4697 12 1 -0.2361 0.3997 -5.2576 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8866 -0.5034 3.7024 16 7 2.6493 -1.5821 3.8058 17 6 2.9880 -2.0594 4.9920 18 6 2.5346 -1.4173 6.1338 19 6 1.7341 -0.2953 5.9894 20 6 1.2136 0.4314 7.2026 21 9 0.4308 -0.4397 7.9678 22 9 2.2904 0.8874 7.9707 23 7 1.4363 0.1327 4.7735 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 2.8622 -1.8815 -4.7338 33 1 3.1301 -0.7217 1.2489 34 1 1.6768 -1.7490 1.2490 35 1 0.9939 0.7576 2.3565 36 1 3.6102 -2.9388 5.0699 37 1 2.7959 -1.7861 7.1147 38 1 0.6085 1.2808 6.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340941788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -60.283809 kcal Electronic energy + Delta-G solvation = -22008.209364 eV Core-core repulsion = 18328.270053 eV Total energy + Delta-G solvation = -3679.939311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.37272 -47.36204 -41.07892 -37.87949 -34.80195 -34.11575 -32.43479 -30.76486 -27.74647 -27.11975 -26.54796 -26.07521 -23.98652 -23.21347 -21.89848 -18.94712 -18.29074 -17.87705 -17.61721 -16.88408 -16.30655 -16.25876 -15.55785 -15.35966 -14.60980 -14.38124 -14.28659 -14.08512 -13.93537 -13.72658 -13.22491 -13.08287 -12.81063 -12.48552 -12.08802 -11.78643 -11.34526 -11.16684 -11.04699 -11.02422 -10.88904 -10.69449 -10.45814 -10.43493 -10.29909 -9.85846 -9.35212 -9.24507 -8.98177 -8.38736 -8.05141 -6.03086 -4.04471 0.74216 1.05460 2.65908 3.27632 3.30324 3.35716 3.37341 3.65928 3.79343 4.08016 4.33146 4.43385 4.66080 4.80441 4.92758 5.06274 5.32505 5.34834 5.47210 5.56336 5.71583 5.95177 6.13502 6.18143 6.21855 6.34328 6.57011 6.59471 6.68897 6.98723 7.03069 7.03944 7.13228 7.44125 7.59384 7.71466 7.95246 8.22677 8.37130 8.99898 9.58855 11.08352 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.002962 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.552992 B = 9451.477326 C = 9761.005598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.143 3.857 14 N -0.680 5.680 15 C 0.571 3.429 16 N -0.549 5.549 17 C 0.202 3.798 18 C -0.269 4.269 19 C 0.144 3.856 20 C 0.326 3.674 21 F -0.190 7.190 22 F -0.190 7.190 23 N -0.556 5.556 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 2.140 20.538 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.020 3.980 14 N -0.315 5.315 15 C 0.214 3.786 16 N -0.272 5.272 17 C 0.032 3.968 18 C -0.297 4.297 19 C -0.006 4.006 20 C 0.271 3.729 21 F -0.172 7.172 22 F -0.172 7.172 23 N -0.280 5.280 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.253 0.747 36 H 0.191 0.809 37 H 0.164 0.836 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.638 2.287 19.264 19.468 hybrid contribution -0.200 0.287 0.001 0.350 sum -1.839 2.574 19.265 19.523 Atomic orbital electron populations 1.21771 0.95181 1.01204 1.00352 1.20951 0.95590 0.95964 0.94890 1.21769 1.00544 0.95844 1.00354 1.19071 0.96350 0.95189 0.89299 1.21142 1.31309 1.12157 0.90512 0.92293 1.25001 0.95266 0.95066 0.99075 1.69946 1.36826 1.23034 1.23599 0.86706 0.79168 0.79788 0.82621 1.20308 1.21375 1.20303 1.21705 0.98919 0.95814 0.81605 1.44682 1.54016 1.32045 1.00781 1.19314 0.86902 0.85962 0.86398 1.68078 1.17078 1.13705 1.28331 1.23036 0.91542 0.96153 0.86053 1.22226 1.05421 1.00029 1.01978 1.21464 0.93619 0.93140 0.92402 1.20086 0.81108 0.90362 0.81306 1.93036 1.74508 1.72366 1.77255 1.93036 1.57799 1.89228 1.77109 1.67398 1.28414 1.34384 0.97789 0.95213 0.91323 0.93334 0.93331 0.91329 0.95207 0.96292 0.96295 0.92950 0.91561 0.91563 0.74714 0.80942 0.83632 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.92 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.14 2.40 4.54 -4.04 -0.02 2.38 16 14 N -0.68 -10.19 5.11 -62.31 -0.32 -10.51 16 15 C 0.57 8.59 8.42 -322.82 -2.72 5.87 16 16 N -0.55 -8.02 9.59 -13.93 -0.13 -8.15 16 17 C 0.20 2.24 11.30 -17.22 -0.19 2.04 16 18 C -0.27 -2.81 9.76 -39.31 -0.38 -3.20 16 19 C 0.14 1.69 6.31 -82.26 -0.52 1.17 16 20 C 0.33 3.03 5.58 36.01 0.20 3.23 16 21 F -0.19 -1.90 17.27 2.25 0.04 -1.86 16 22 F -0.19 -1.90 17.27 2.25 0.04 -1.86 16 23 N -0.56 -7.65 10.38 -10.16 -0.11 -7.75 16 24 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.41 5.78 6.28 -40.82 -0.26 5.53 16 36 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -29.67 323.75 -8.37 -38.04 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.89 Total: 1.76 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.59 Total: -5.22 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.18 Total: -51.71 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.08 Total: -3.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.67 -8.37 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340941788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.243 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds