Wall clock time and date at job start Tue Mar 31 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53005 * 109.46758 * 240.00158 * 2 1 3 5 5 C 1.50699 * 109.46925 * 60.00059 * 4 2 1 6 6 H 1.08002 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00120 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47390 * 60.00037 * 9 7 5 11 11 H 1.48504 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47009 * 299.99362 * 9 7 5 13 13 C 1.52994 * 109.47211 * 120.00571 * 2 1 3 14 14 N 1.46504 * 109.47251 * 299.99662 * 13 2 1 15 15 C 1.38405 * 120.00292 * 180.02562 * 14 13 2 16 16 N 1.32511 * 119.21307 * 359.97438 * 15 14 13 17 17 C 1.32269 * 120.73564 * 179.97438 * 16 15 14 18 18 C 1.38629 * 119.19530 * 0.02562 * 17 16 15 19 19 C 1.38580 * 118.55892 * 0.25192 * 18 17 16 20 20 C 1.50703 * 120.39895 * 179.74568 * 19 18 17 21 21 F 1.39901 * 109.46977 * 299.99905 * 20 19 18 22 22 F 1.39899 * 109.47096 * 59.99727 * 20 19 18 23 23 N 1.32296 * 119.19594 * 359.51034 * 19 18 17 24 24 H 1.09001 * 109.46410 * 299.99390 * 1 2 3 25 25 H 1.08998 * 109.47171 * 59.99603 * 1 2 3 26 26 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47142 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47192 * 300.01010 * 3 2 1 29 29 H 1.09005 * 109.46850 * 60.00003 * 3 2 1 30 30 H 1.08996 * 109.46861 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.47192 * 300.00221 * 4 2 1 32 32 H 0.96998 * 120.00141 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47089 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.47212 * 59.99973 * 13 2 1 35 35 H 0.96998 * 119.99648 * 0.02562 * 14 13 2 36 36 H 1.08002 * 120.39781 * 180.02562 * 17 16 15 37 37 H 1.08002 * 120.71605 * 179.97438 * 18 17 16 38 38 H 1.09003 * 109.46814 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6279 -1.5501 -3.8528 9 14 1.2489 0.3997 -5.2571 10 1 1.7439 1.7997 -5.2566 11 1 1.7447 -0.2996 -6.4697 12 1 -0.2361 0.3997 -5.2576 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8866 -0.5034 3.7024 16 7 2.6493 -1.5821 3.8058 17 6 2.9880 -2.0594 4.9920 18 6 2.5346 -1.4173 6.1338 19 6 1.7341 -0.2953 5.9894 20 6 1.2136 0.4314 7.2026 21 9 0.4308 -0.4397 7.9678 22 9 2.2904 0.8874 7.9707 23 7 1.4363 0.1327 4.7735 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2496 31 1 1.6766 -1.7489 -1.2494 32 1 2.8622 -1.8815 -4.7338 33 1 3.1301 -0.7217 1.2489 34 1 1.6768 -1.7490 1.2490 35 1 0.9939 0.7576 2.3565 36 1 3.6102 -2.9388 5.0699 37 1 2.7959 -1.7861 7.1147 38 1 0.6085 1.2808 6.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340941788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:47 Heat of formation + Delta-G solvation = -75.814452 kcal Electronic energy + Delta-G solvation = -22008.882823 eV Core-core repulsion = 18328.270053 eV Total energy + Delta-G solvation = -3680.612771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.12381 -48.11405 -42.05692 -39.31537 -36.11855 -35.09702 -34.32860 -31.89799 -29.01849 -28.58708 -27.99076 -27.42361 -25.11238 -24.72982 -23.07630 -20.16581 -19.24127 -19.07031 -18.37062 -18.35141 -17.74761 -17.25682 -16.48347 -16.45936 -16.40338 -15.72322 -15.39237 -15.06040 -14.99194 -14.63261 -14.48045 -14.37760 -14.00119 -13.96795 -13.93310 -12.91541 -12.75713 -12.66609 -12.55381 -12.34113 -12.22648 -12.09717 -12.02484 -11.99175 -11.72784 -11.32634 -11.02541 -10.87390 -10.49704 -10.29945 -9.14522 -8.13560 -6.20831 -0.17560 0.11722 1.43000 1.44498 1.51636 1.65503 2.36330 2.45234 2.69135 3.08508 3.21041 3.25978 3.47289 3.88578 3.91843 3.98933 4.08398 4.12552 4.22142 4.27869 4.52330 4.68828 4.73156 4.76986 4.94722 5.06149 5.10228 5.19883 5.41370 5.48895 5.50773 5.55288 5.64874 5.79639 5.90277 6.04935 6.30438 6.37994 6.93719 7.20486 7.46704 8.98614 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.002962 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.552992 B = 9451.477326 C = 9761.005598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 C -0.121 4.121 4 C 0.044 3.956 5 C -0.517 4.517 6 H 0.070 0.930 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.164 3.836 14 N -0.681 5.681 15 C 0.554 3.446 16 N -0.579 5.579 17 C 0.197 3.803 18 C -0.259 4.259 19 C 0.128 3.872 20 C 0.333 3.667 21 F -0.193 7.193 22 F -0.193 7.193 23 N -0.563 5.563 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.062 0.938 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.418 0.582 36 H 0.208 0.792 37 H 0.174 0.826 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 3.243 22.258 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.067 4.067 3 C -0.178 4.178 4 C 0.007 3.993 5 C -0.555 4.555 6 H 0.088 0.912 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.193 1.193 13 C 0.040 3.960 14 N -0.318 5.318 15 C 0.197 3.803 16 N -0.303 5.303 17 C 0.029 3.971 18 C -0.285 4.285 19 C -0.022 4.022 20 C 0.279 3.721 21 F -0.175 7.175 22 F -0.175 7.175 23 N -0.287 5.287 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.258 0.742 36 H 0.224 0.776 37 H 0.192 0.808 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.428 3.400 21.045 21.456 hybrid contribution 0.094 -0.128 -0.375 0.407 sum -2.334 3.272 20.670 21.057 Atomic orbital electron populations 1.21683 0.93930 1.00956 1.01259 1.20743 0.96476 0.96239 0.93214 1.21682 0.99982 0.94906 1.01260 1.18922 0.94427 0.94204 0.91790 1.21567 1.30523 1.12144 0.91236 0.91231 1.25889 0.95646 0.95844 1.02523 1.70095 1.38616 1.24880 1.24157 0.85645 0.78934 0.78785 0.78558 1.19298 1.21595 1.19283 1.21204 0.97904 0.95027 0.81875 1.44340 1.54814 1.32325 1.00348 1.19406 0.87713 0.86603 0.86562 1.68094 1.17773 1.14120 1.30290 1.23688 0.91297 0.96888 0.85243 1.22617 1.03755 0.99006 1.03086 1.21979 0.93833 0.93832 0.92512 1.20172 0.81068 0.90637 0.80268 1.93033 1.74517 1.72655 1.77248 1.93033 1.58136 1.89190 1.77104 1.67384 1.28650 1.34526 0.98127 0.91962 0.92626 0.94199 0.94202 0.92632 0.91957 0.99197 0.99194 0.93129 0.92885 0.92882 0.74184 0.77556 0.80823 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.05 71.99 0.58 -3.56 16 2 C -0.07 -2.47 0.54 -52.18 -0.03 -2.50 16 3 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 4 C 0.04 2.19 4.04 29.85 0.12 2.31 16 5 C -0.52 -27.43 7.65 25.60 0.20 -27.23 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 8 N -0.94 -56.11 13.29 21.45 0.28 -55.83 16 9 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 C 0.16 5.59 4.54 86.38 0.39 5.98 16 14 N -0.68 -19.80 5.11 -351.04 -1.79 -21.60 16 15 C 0.55 16.10 8.42 261.49 2.20 18.30 16 16 N -0.58 -16.39 9.59 -197.98 -1.90 -18.29 16 17 C 0.20 3.96 11.30 84.72 0.96 4.91 16 18 C -0.26 -4.71 9.76 22.44 0.22 -4.49 16 19 C 0.13 2.70 6.31 42.57 0.27 2.97 16 20 C 0.33 5.33 5.58 71.24 0.40 5.73 16 21 F -0.19 -3.37 17.27 44.97 0.78 -2.59 16 22 F -0.19 -3.38 17.27 44.97 0.78 -2.60 16 23 N -0.56 -14.52 10.38 -186.05 -1.93 -16.45 16 24 H 0.06 1.72 6.86 -2.39 -0.02 1.70 16 25 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 29 H 0.06 1.72 6.86 -2.38 -0.02 1.70 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.42 10.95 6.28 -92.71 -0.58 10.37 16 36 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -65.16 323.75 5.09 -60.07 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.50 Total: 12.74 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.35 Total: -0.77 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.34 Total: -112.16 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 1.55 Total: -5.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.16 5.09 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340941788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.745 kcal (2) G-P(sol) polarization free energy of solvation -65.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds