Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99753 * 2 1 4 4 H 1.48502 * 109.47447 * 240.00220 * 3 2 1 5 5 H 1.48493 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46770 * 120.00760 * 3 2 1 7 7 C 1.37874 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47211 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47296 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47102 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99860 * 179.97438 * 12 11 10 14 14 O 1.21574 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.47686 * 120.00124 * 179.97438 * 13 12 11 16 16 C 1.39767 * 119.95588 * 0.02562 * 15 13 12 17 17 C 1.37680 * 120.02510 * 180.02562 * 16 15 13 18 18 C 1.39488 * 119.82789 * 0.29779 * 17 16 15 19 19 C 1.39834 * 120.19184 * 359.41308 * 18 17 16 20 20 C 1.37465 * 120.00687 * 0.58405 * 19 18 17 21 21 C 1.50611 * 119.34574 * 180.33282 * 19 18 17 22 22 C 1.52747 * 109.80247 * 325.67027 * 21 19 18 23 23 C 1.50325 * 110.69936 * 50.41706 * 22 21 19 24 24 C 1.32635 * 121.07748 * 324.16161 * 23 22 21 25 25 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46997 * 60.00194 * 9 7 2 27 27 H 1.08999 * 109.46938 * 300.00697 * 9 7 2 28 28 H 1.09007 * 109.47029 * 60.00349 * 10 9 7 29 29 H 1.09004 * 109.47254 * 300.00754 * 10 9 7 30 30 H 1.08999 * 109.47147 * 59.99811 * 11 10 9 31 31 H 1.09006 * 109.46996 * 299.99780 * 11 10 9 32 32 H 0.97001 * 120.00330 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.98534 * 359.97438 * 16 15 13 34 34 H 1.08002 * 120.08166 * 180.02562 * 17 16 15 35 35 H 1.07993 * 120.06838 * 179.69022 * 20 19 18 36 36 H 1.08992 * 109.41606 * 85.76929 * 21 19 18 37 37 H 1.08995 * 109.41856 * 205.57019 * 21 19 18 38 38 H 1.09000 * 109.23203 * 170.73631 * 22 21 19 39 39 H 1.09003 * 109.23213 * 290.14219 * 22 21 19 40 40 H 1.07998 * 119.46160 * 144.17595 * 23 22 21 41 41 H 1.07994 * 120.26284 * 180.44614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0006 13 6 1.9832 -7.3713 -0.0005 14 8 0.7880 -7.5934 -0.0004 15 6 2.9429 -8.4938 -0.0004 16 6 4.3169 -8.2373 0.0001 17 6 5.2128 -9.2827 -0.0004 18 6 4.7455 -10.5970 -0.0077 19 6 3.3711 -10.8547 -0.0021 20 6 2.4761 -9.8114 -0.0015 21 6 2.8876 -12.2811 -0.0024 22 6 3.8419 -13.1507 -0.8187 23 6 5.2639 -12.9328 -0.3827 24 6 5.6881 -11.7344 -0.0045 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6042 -0.8905 30 1 0.8540 -5.0445 -0.8914 31 1 0.8535 -5.0450 0.8887 32 1 3.3862 -5.9233 0.0005 33 1 4.6758 -7.2187 0.0000 34 1 6.2747 -9.0856 0.0004 35 1 1.4144 -10.0093 -0.0022 36 1 2.8476 -12.6504 1.0222 37 1 1.8911 -12.3258 -0.4418 38 1 3.5802 -14.1996 -0.6790 39 1 3.7472 -12.8947 -1.8740 40 1 5.9515 -13.7656 -0.3776 41 1 6.7144 -11.5912 0.2994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341631201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = -24.674067 kcal Electronic energy + Delta-G solvation = -20662.970305 eV Core-core repulsion = 17506.511926 eV Total energy + Delta-G solvation = -3156.458378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51369 -39.10508 -36.15795 -35.44158 -33.36021 -32.73854 -31.51416 -30.29406 -29.42495 -26.84064 -24.40742 -23.84208 -22.68387 -22.16941 -20.78986 -20.15961 -18.48308 -17.65454 -16.63485 -16.15810 -15.81572 -15.50646 -15.28573 -14.86533 -14.64170 -14.42487 -13.96166 -13.90956 -13.56208 -13.34321 -12.91493 -12.66669 -12.32894 -12.23986 -11.98920 -11.84250 -11.71515 -11.07431 -10.97588 -10.88854 -10.72603 -10.63146 -10.28899 -9.95108 -9.87024 -9.39837 -9.13403 -9.07962 -8.82913 -8.37156 -8.35290 -6.01755 -4.05051 0.34710 1.13745 1.90850 2.99698 3.32003 3.33769 3.36898 3.39467 3.76653 4.26788 4.29032 4.44087 4.51759 4.65645 4.74489 4.83285 4.93362 4.99176 5.07393 5.24080 5.33818 5.38620 5.45234 5.65005 5.65977 5.71091 5.77148 5.80696 5.91218 6.01096 6.14921 6.15462 6.28799 6.45571 6.49076 6.58990 6.64538 6.82492 6.99289 7.63002 7.68482 7.75763 7.96713 8.34110 8.38773 9.01325 9.59040 11.09467 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042737 B = 0.002380 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.014997 B =11762.002445 C =12350.076264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.720 5.720 13 C 0.550 3.450 14 O -0.541 6.541 15 C -0.126 4.126 16 C -0.089 4.089 17 C -0.113 4.113 18 C -0.037 4.037 19 C -0.088 4.088 20 C -0.058 4.058 21 C -0.079 4.079 22 C -0.094 4.094 23 C -0.137 4.137 24 C -0.127 4.127 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.397 0.603 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -26.616 -0.427 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.337 3.663 14 O -0.420 6.420 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.131 4.131 18 C -0.037 4.037 19 C -0.088 4.088 20 C -0.077 4.077 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.155 4.155 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.833 -26.613 -0.430 28.736 hybrid contribution 1.044 1.189 0.028 1.582 sum 11.877 -25.424 -0.402 28.064 Atomic orbital electron populations 1.69955 1.06053 1.26812 1.50437 1.25034 0.94871 0.99308 0.95274 0.86634 0.79552 0.83076 0.78580 1.20244 1.21272 1.20248 1.21162 0.92949 0.90943 1.51092 0.92694 1.19027 0.93842 0.90806 0.97695 1.21898 0.99809 0.93315 1.00901 1.21689 0.91844 0.84941 1.02177 1.46151 1.10906 1.05797 1.74226 1.18257 0.88124 0.83005 0.76912 1.90770 1.16232 1.84871 1.50134 1.20099 0.93461 0.94029 1.05329 1.21290 0.92050 0.99564 0.97889 1.21082 0.99809 0.91340 1.00850 1.19066 0.92662 0.93365 0.98618 1.19896 0.92480 0.95493 1.00914 1.21010 1.00350 0.90438 0.95870 1.20425 0.99171 0.90691 1.01321 1.20463 0.92181 1.00172 1.00320 1.23248 0.97127 0.96969 0.98200 1.21657 0.98446 0.92247 1.02100 0.92857 0.96236 0.96241 0.92684 0.92692 0.91566 0.91575 0.76757 0.85279 0.85151 0.84479 0.90261 0.89941 0.90341 0.90388 0.86494 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 11 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 12 N -0.72 -10.81 5.50 -61.30 -0.34 -11.15 16 13 C 0.55 8.79 7.77 -12.40 -0.10 8.70 16 14 O -0.54 -10.60 16.33 5.30 0.09 -10.51 16 15 C -0.13 -1.63 5.88 -104.89 -0.62 -2.25 16 16 C -0.09 -0.93 9.52 -39.21 -0.37 -1.30 16 17 C -0.11 -1.04 9.80 -39.32 -0.39 -1.43 16 18 C -0.04 -0.35 5.78 -104.96 -0.61 -0.96 16 19 C -0.09 -0.89 5.67 -104.35 -0.59 -1.48 16 20 C -0.06 -0.70 9.24 -39.28 -0.36 -1.06 16 21 C -0.08 -0.60 5.95 -28.06 -0.17 -0.76 16 22 C -0.09 -0.59 6.05 -28.19 -0.17 -0.76 16 23 C -0.14 -0.89 10.03 -36.39 -0.36 -1.25 16 24 C -0.13 -0.95 9.90 -37.61 -0.37 -1.33 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 4.80 6.48 -40.82 -0.26 4.54 16 33 H 0.13 1.09 6.38 -52.48 -0.33 0.75 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 1.67 7.64 -52.49 -0.40 1.26 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.14 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -32.99 344.11 -10.20 -43.20 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.03 Total: 0.23 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -4.82 Total: -17.30 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.40 Total: -37.30 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.99 -10.20 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341631201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.523 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds