Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99753 * 2 1 4 4 H 1.48502 * 109.47447 * 240.00220 * 3 2 1 5 5 H 1.48493 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46770 * 120.00760 * 3 2 1 7 7 C 1.37874 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47211 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47296 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47102 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99860 * 179.97438 * 12 11 10 14 14 O 1.21574 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.47686 * 120.00124 * 179.97438 * 13 12 11 16 16 C 1.39767 * 119.95588 * 0.02562 * 15 13 12 17 17 C 1.37680 * 120.02510 * 180.02562 * 16 15 13 18 18 C 1.39488 * 119.82789 * 0.29779 * 17 16 15 19 19 C 1.39834 * 120.19184 * 359.41308 * 18 17 16 20 20 C 1.37465 * 120.00687 * 0.58405 * 19 18 17 21 21 C 1.50611 * 119.34574 * 180.33282 * 19 18 17 22 22 C 1.52747 * 109.80247 * 325.67027 * 21 19 18 23 23 C 1.50325 * 110.69936 * 50.41706 * 22 21 19 24 24 C 1.32635 * 121.07748 * 324.16161 * 23 22 21 25 25 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46997 * 60.00194 * 9 7 2 27 27 H 1.08999 * 109.46938 * 300.00697 * 9 7 2 28 28 H 1.09007 * 109.47029 * 60.00349 * 10 9 7 29 29 H 1.09004 * 109.47254 * 300.00754 * 10 9 7 30 30 H 1.08999 * 109.47147 * 59.99811 * 11 10 9 31 31 H 1.09006 * 109.46996 * 299.99780 * 11 10 9 32 32 H 0.97001 * 120.00330 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.98534 * 359.97438 * 16 15 13 34 34 H 1.08002 * 120.08166 * 180.02562 * 17 16 15 35 35 H 1.07993 * 120.06838 * 179.69022 * 20 19 18 36 36 H 1.08992 * 109.41606 * 85.76929 * 21 19 18 37 37 H 1.08995 * 109.41856 * 205.57019 * 21 19 18 38 38 H 1.09000 * 109.23203 * 170.73631 * 22 21 19 39 39 H 1.09003 * 109.23213 * 290.14219 * 22 21 19 40 40 H 1.07998 * 119.46160 * 144.17595 * 23 22 21 41 41 H 1.07994 * 120.26284 * 180.44614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0006 13 6 1.9832 -7.3713 -0.0005 14 8 0.7880 -7.5934 -0.0004 15 6 2.9429 -8.4938 -0.0004 16 6 4.3169 -8.2373 0.0001 17 6 5.2128 -9.2827 -0.0004 18 6 4.7455 -10.5970 -0.0077 19 6 3.3711 -10.8547 -0.0021 20 6 2.4761 -9.8114 -0.0015 21 6 2.8876 -12.2811 -0.0024 22 6 3.8419 -13.1507 -0.8187 23 6 5.2639 -12.9328 -0.3827 24 6 5.6881 -11.7344 -0.0045 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6042 -0.8905 30 1 0.8540 -5.0445 -0.8914 31 1 0.8535 -5.0450 0.8887 32 1 3.3862 -5.9233 0.0005 33 1 4.6758 -7.2187 0.0000 34 1 6.2747 -9.0856 0.0004 35 1 1.4144 -10.0093 -0.0022 36 1 2.8476 -12.6504 1.0222 37 1 1.8911 -12.3258 -0.4418 38 1 3.5802 -14.1996 -0.6790 39 1 3.7472 -12.8947 -1.8740 40 1 5.9515 -13.7656 -0.3776 41 1 6.7144 -11.5912 0.2994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341631201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = -43.496377 kcal Electronic energy + Delta-G solvation = -20663.786501 eV Core-core repulsion = 17506.511926 eV Total energy + Delta-G solvation = -3157.274575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44960 -40.15999 -37.07032 -36.82938 -35.24157 -33.43412 -33.18494 -31.30365 -30.09384 -28.60179 -25.72222 -24.55451 -24.11968 -22.92455 -22.35103 -21.44420 -19.22511 -18.76332 -18.40362 -17.34546 -16.77567 -16.75896 -16.46812 -16.16577 -15.75697 -15.51135 -15.31678 -14.90371 -14.35813 -14.32369 -14.08046 -13.77436 -13.69299 -13.48337 -13.32071 -12.88687 -12.72275 -12.65450 -12.56509 -12.42716 -11.73226 -11.69354 -11.65057 -11.52509 -11.27632 -10.99256 -10.95864 -10.55207 -10.19885 -9.85439 -9.05210 -8.19591 -6.31411 -0.46201 0.35868 1.20419 1.41606 1.44887 1.52724 1.99595 2.09832 2.42454 2.88601 3.13939 3.57396 3.65029 3.78777 3.90982 4.06326 4.12879 4.16333 4.18069 4.24613 4.40657 4.47864 4.51801 4.65746 4.76299 4.90778 4.91314 4.93809 4.99505 5.09816 5.12728 5.15248 5.23507 5.31388 5.35240 5.39389 5.50829 5.69030 5.70513 5.83147 5.84125 5.96542 6.21236 6.48494 6.85722 7.12728 7.38130 8.92333 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042737 B = 0.002380 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.014997 B =11762.002445 C =12350.076264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.708 5.708 13 C 0.549 3.451 14 O -0.588 6.588 15 C -0.152 4.152 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.035 4.035 19 C -0.098 4.098 20 C -0.073 4.073 21 C -0.081 4.081 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.147 4.147 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.414 0.586 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.459 -27.845 -0.485 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.360 5.360 13 C 0.338 3.662 14 O -0.470 6.470 15 C -0.155 4.155 16 C -0.104 4.104 17 C -0.132 4.132 18 C -0.036 4.036 19 C -0.098 4.098 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.165 4.165 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.252 0.748 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.160 0.840 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.464 -27.855 -0.489 31.390 hybrid contribution -0.064 1.425 0.035 1.427 sum 14.399 -26.430 -0.453 30.101 Atomic orbital electron populations 1.70109 1.07970 1.27876 1.51593 1.26051 0.95775 1.03644 0.94774 0.85446 0.78162 0.77807 0.79296 1.18969 1.21210 1.18978 1.21647 0.93778 0.91935 1.50593 0.91424 1.18943 0.94441 0.92965 0.95086 1.21607 0.98482 0.91568 1.02280 1.21296 0.91946 0.85407 1.00853 1.45895 1.11300 1.04862 1.73954 1.18784 0.88100 0.83697 0.75581 1.90736 1.18383 1.85520 1.52380 1.19903 0.93973 0.92937 1.08714 1.21504 0.90882 1.01099 0.96919 1.21444 1.01104 0.90783 0.99847 1.19477 0.92784 0.94587 0.96708 1.20173 0.92793 0.96186 1.00637 1.21028 1.00204 0.91006 0.96916 1.20502 0.99777 0.89515 1.02042 1.20547 0.91978 1.01099 0.99810 1.23580 0.97322 0.97330 0.95936 1.21837 0.99072 0.91795 1.03805 0.92809 0.98956 0.98964 0.91182 0.91191 0.93049 0.93065 0.74755 0.83346 0.82133 0.85903 0.89699 0.89750 0.88104 0.90615 0.83985 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 11 C 0.13 4.75 5.67 86.38 0.49 5.24 16 12 N -0.71 -21.28 5.50 -466.11 -2.57 -23.84 16 13 C 0.55 18.13 7.77 86.74 0.67 18.81 16 14 O -0.59 -24.42 16.33 -3.95 -0.06 -24.49 16 15 C -0.15 -3.98 5.88 -20.04 -0.12 -4.09 16 16 C -0.09 -1.65 9.52 22.51 0.21 -1.43 16 17 C -0.11 -1.82 9.80 22.44 0.22 -1.60 16 18 C -0.04 -0.60 5.78 -20.08 -0.12 -0.72 16 19 C -0.10 -1.92 5.67 -19.69 -0.11 -2.03 16 20 C -0.07 -1.81 9.24 22.46 0.21 -1.60 16 21 C -0.08 -1.14 5.95 29.74 0.18 -0.96 16 22 C -0.10 -0.97 6.05 29.65 0.18 -0.79 16 23 C -0.12 -1.17 10.03 24.40 0.24 -0.92 16 24 C -0.15 -1.75 9.90 23.61 0.23 -1.51 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.41 9.43 6.48 -92.71 -0.60 8.83 16 33 H 0.15 2.14 6.38 -2.91 -0.02 2.12 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.12 3.28 7.64 -2.91 -0.02 3.25 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -73.58 344.11 3.40 -70.18 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.42 Total: 13.48 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.30 Total: -23.98 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -2.28 Total: -81.13 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.58 3.40 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341631201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.683 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds