Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03867 * 2 1 4 4 C 1.30857 * 108.22326 * 180.30227 * 3 2 1 5 5 C 1.39934 * 108.21064 * 359.74602 * 4 3 2 6 6 Cl 1.73601 * 126.04373 * 179.97438 * 5 4 3 7 7 C 1.35047 * 126.03738 * 179.85704 * 2 1 3 8 8 C 1.50704 * 126.13165 * 359.96930 * 7 2 1 9 9 N 1.46898 * 109.47041 * 89.71322 * 8 7 2 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46733 * 299.99953 * 11 10 9 13 13 C 1.53005 * 109.47212 * 59.99438 * 11 10 9 14 14 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47239 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99960 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99798 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99830 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.47012 * 89.99724 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99436 * 19 17 15 22 22 H 1.48496 * 109.47022 * 329.99978 * 19 17 15 23 23 H 1.09000 * 109.47406 * 270.14467 * 1 2 3 24 24 H 1.09007 * 109.47088 * 30.13768 * 1 2 3 25 25 H 1.08993 * 109.47345 * 150.13635 * 1 2 3 26 26 H 1.07992 * 125.89381 * 179.76586 * 4 3 2 27 27 H 1.08997 * 109.46924 * 329.71233 * 8 7 2 28 28 H 1.08995 * 109.46962 * 209.71387 * 8 7 2 29 29 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 30 30 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 31 31 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 32 32 H 1.09002 * 109.47288 * 60.00045 * 12 11 10 33 33 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.47188 * 299.99959 * 12 11 10 35 35 H 1.08996 * 109.46524 * 60.00440 * 13 11 10 36 36 H 1.09001 * 109.46962 * 180.02562 * 13 11 10 37 37 H 1.08992 * 109.47457 * 300.00343 * 13 11 10 38 38 H 1.08996 * 109.47261 * 300.00171 * 14 11 10 39 39 H 1.09000 * 109.46870 * 59.99782 * 14 11 10 40 40 H 0.96992 * 120.00108 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5349 0.7324 -0.0066 5 6 3.5446 -0.6669 -0.0050 6 17 4.9553 -1.6786 -0.0125 7 6 2.2595 -1.0920 0.0027 8 6 1.7980 -2.5267 0.0070 9 7 1.6409 -2.9946 -1.3766 10 6 1.1916 -4.3928 -1.4117 11 6 1.0402 -4.8436 -2.8658 12 6 0.0091 -3.9587 -3.5694 13 6 2.3879 -4.7228 -3.5801 14 6 0.5729 -6.3000 -2.9024 15 6 0.4233 -6.7437 -4.3348 16 1 0.6403 -6.0559 -5.1387 17 6 0.0104 -8.0282 -4.6189 18 7 -0.1197 -8.4157 -5.8689 19 14 -0.3641 -9.2181 -3.2285 20 1 -1.7968 -9.1061 -2.8536 21 1 -0.0757 -10.6053 -3.6729 22 1 0.4821 -8.8886 -2.0536 23 1 -0.3634 0.0026 1.0276 24 1 -0.3634 0.8888 -0.5160 25 1 -0.3634 -0.8911 -0.5117 26 1 4.4054 1.3716 -0.0119 27 1 0.8422 -2.5993 0.5259 28 1 2.5366 -3.1444 0.5177 29 1 2.4970 -2.8770 -1.8975 30 1 1.9264 -5.0232 -0.9109 31 1 0.2317 -4.4788 -0.9025 32 1 0.3425 -2.9213 -3.5434 33 1 -0.0984 -4.2796 -4.6055 34 1 -0.9510 -4.0447 -3.0605 35 1 3.1224 -5.3531 -3.0789 36 1 2.2800 -5.0435 -4.6163 37 1 2.7213 -3.6854 -3.5542 38 1 1.3077 -6.9300 -2.4013 39 1 -0.3871 -6.3863 -2.3934 40 1 -0.4098 -9.3194 -6.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342278969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = 58.706117 kcal Electronic energy + Delta-G solvation = -20517.205605 eV Core-core repulsion = 17394.222764 eV Total energy + Delta-G solvation = -3122.982841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55118 -37.87445 -36.55700 -34.87967 -33.32025 -32.26168 -30.49901 -27.77347 -26.93458 -26.42267 -26.28608 -24.22945 -21.86443 -21.54344 -20.20492 -18.07641 -17.13087 -16.75768 -16.02342 -15.59410 -14.76041 -14.66327 -14.58560 -14.17476 -13.92485 -13.46601 -13.29585 -12.98244 -12.77747 -12.68486 -12.28610 -12.10758 -11.97449 -11.78787 -11.47327 -11.10565 -10.98028 -10.90457 -10.67964 -10.53598 -10.41540 -9.83932 -9.73015 -9.67613 -9.33573 -8.94184 -8.59243 -8.51564 -8.34799 -6.01606 -3.98042 1.45291 1.80975 2.35031 2.61550 3.30291 3.38426 3.41017 4.13415 4.36785 4.46401 4.48726 4.72053 4.94212 5.05374 5.22761 5.24959 5.31192 5.36111 5.46345 5.56981 5.66883 5.82263 6.07142 6.11999 6.17149 6.36054 6.54772 6.57571 6.64535 6.75061 6.97413 7.07033 7.11621 7.19283 7.28617 7.31656 7.38083 7.48395 7.83045 8.57777 9.04281 9.61272 11.11522 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003681 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.530592 B = 7604.796102 C = 8007.522700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.352 5.352 3 N -0.286 5.286 4 C 0.064 3.936 5 C -0.190 4.190 6 Cl -0.043 7.043 7 C 0.117 3.883 8 C 0.113 3.887 9 N -0.680 5.680 10 C 0.067 3.933 11 C -0.048 4.048 12 C -0.118 4.118 13 C -0.132 4.132 14 C -0.004 4.004 15 C -0.508 4.508 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.190 0.810 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.348 0.652 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 16.068 14.330 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.134 5.134 3 N -0.108 5.108 4 C -0.122 4.122 5 C -0.230 4.230 6 Cl -0.015 7.015 7 C -0.014 4.014 8 C -0.018 4.018 9 N -0.313 5.313 10 C -0.061 4.061 11 C -0.048 4.048 12 C -0.175 4.175 13 C -0.189 4.189 14 C -0.041 4.041 15 C -0.546 4.546 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.207 0.793 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.168 0.832 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.028 0.972 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.365 17.104 14.161 22.459 hybrid contribution 1.228 -1.993 0.944 2.525 sum 4.594 15.111 15.106 21.855 Atomic orbital electron populations 1.22006 0.73063 1.05635 1.03459 1.48242 1.06863 1.02825 1.55443 1.77474 1.00861 1.07960 1.24461 1.23779 0.95763 0.92881 0.99816 1.20507 0.88045 0.91796 1.22605 1.98331 1.37722 1.67611 1.97832 1.20691 0.89662 0.91101 0.99912 1.20541 1.01332 0.86985 0.92898 1.60635 1.38197 1.22525 1.09938 1.22190 0.99334 0.85679 0.98906 1.20419 0.95832 0.97315 0.91258 1.21621 0.97262 0.97572 1.01060 1.21788 0.96042 0.98609 1.02455 1.19623 0.95422 0.90908 0.98191 1.21128 1.44560 0.97785 0.91109 0.90425 1.25017 0.95250 0.98163 0.95125 1.69904 1.48168 1.18644 1.17741 0.86851 0.78964 0.80557 0.83297 1.20457 1.21570 1.19175 0.90647 0.88969 0.88082 0.79322 0.89562 0.92147 0.83232 0.95329 0.91326 0.93803 0.92037 0.94215 0.93990 0.91078 0.94590 0.96873 0.97157 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.10 59.84 0.66 1.44 16 2 N -0.35 -3.92 4.02 -63.85 -0.26 -4.18 16 3 N -0.29 -3.48 12.58 30.64 0.39 -3.10 16 4 C 0.06 0.69 12.02 -17.33 -0.21 0.49 16 5 C -0.19 -2.18 6.64 -39.97 -0.27 -2.45 16 6 Cl -0.04 -0.47 28.88 -51.86 -1.50 -1.97 16 7 C 0.12 1.33 6.45 -82.20 -0.53 0.80 16 8 C 0.11 1.22 5.52 -4.97 -0.03 1.20 16 9 N -0.68 -8.71 5.70 -115.06 -0.66 -9.36 16 10 C 0.07 1.00 4.65 -3.82 -0.02 0.98 16 11 C -0.05 -0.88 0.60 -154.51 -0.09 -0.97 16 12 C -0.12 -2.15 8.06 37.16 0.30 -1.85 16 13 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 14 C 0.00 -0.08 3.11 -27.89 -0.09 -0.17 16 15 C -0.51 -13.74 8.21 -34.44 -0.28 -14.02 16 16 H 0.08 2.25 5.92 -52.48 -0.31 1.94 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.88 21.39 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.10 0.77 7.67 -51.93 -0.40 0.37 16 26 H 0.19 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.09 0.82 7.74 -51.93 -0.40 0.42 16 28 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 29 H 0.35 4.68 6.76 -39.29 -0.27 4.42 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 33 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 37 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 336.47 15.07 5.07 5.07 Total: -1.00 -30.59 336.47 -7.31 -37.89 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.10 Total: 0.48 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.35 Total: -14.86 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.25 Total: -43.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.59 -7.31 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342278969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.597 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds