Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03867 * 2 1 4 4 C 1.30857 * 108.22326 * 180.30227 * 3 2 1 5 5 C 1.39934 * 108.21064 * 359.74602 * 4 3 2 6 6 Cl 1.73601 * 126.04373 * 179.97438 * 5 4 3 7 7 C 1.35047 * 126.03738 * 179.85704 * 2 1 3 8 8 C 1.50704 * 126.13165 * 359.96930 * 7 2 1 9 9 N 1.46898 * 109.47041 * 89.71322 * 8 7 2 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46733 * 299.99953 * 11 10 9 13 13 C 1.53005 * 109.47212 * 59.99438 * 11 10 9 14 14 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47239 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99960 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99798 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99830 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.47012 * 89.99724 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99436 * 19 17 15 22 22 H 1.48496 * 109.47022 * 329.99978 * 19 17 15 23 23 H 1.09000 * 109.47406 * 270.14467 * 1 2 3 24 24 H 1.09007 * 109.47088 * 30.13768 * 1 2 3 25 25 H 1.08993 * 109.47345 * 150.13635 * 1 2 3 26 26 H 1.07992 * 125.89381 * 179.76586 * 4 3 2 27 27 H 1.08997 * 109.46924 * 329.71233 * 8 7 2 28 28 H 1.08995 * 109.46962 * 209.71387 * 8 7 2 29 29 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 30 30 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 31 31 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 32 32 H 1.09002 * 109.47288 * 60.00045 * 12 11 10 33 33 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.47188 * 299.99959 * 12 11 10 35 35 H 1.08996 * 109.46524 * 60.00440 * 13 11 10 36 36 H 1.09001 * 109.46962 * 180.02562 * 13 11 10 37 37 H 1.08992 * 109.47457 * 300.00343 * 13 11 10 38 38 H 1.08996 * 109.47261 * 300.00171 * 14 11 10 39 39 H 1.09000 * 109.46870 * 59.99782 * 14 11 10 40 40 H 0.96992 * 120.00108 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5349 0.7324 -0.0066 5 6 3.5446 -0.6669 -0.0050 6 17 4.9553 -1.6786 -0.0125 7 6 2.2595 -1.0920 0.0027 8 6 1.7980 -2.5267 0.0070 9 7 1.6409 -2.9946 -1.3766 10 6 1.1916 -4.3928 -1.4117 11 6 1.0402 -4.8436 -2.8658 12 6 0.0091 -3.9587 -3.5694 13 6 2.3879 -4.7228 -3.5801 14 6 0.5729 -6.3000 -2.9024 15 6 0.4233 -6.7437 -4.3348 16 1 0.6403 -6.0559 -5.1387 17 6 0.0104 -8.0282 -4.6189 18 7 -0.1197 -8.4157 -5.8689 19 14 -0.3641 -9.2181 -3.2285 20 1 -1.7968 -9.1061 -2.8536 21 1 -0.0757 -10.6053 -3.6729 22 1 0.4821 -8.8886 -2.0536 23 1 -0.3634 0.0026 1.0276 24 1 -0.3634 0.8888 -0.5160 25 1 -0.3634 -0.8911 -0.5117 26 1 4.4054 1.3716 -0.0119 27 1 0.8422 -2.5993 0.5259 28 1 2.5366 -3.1444 0.5177 29 1 2.4970 -2.8770 -1.8975 30 1 1.9264 -5.0232 -0.9109 31 1 0.2317 -4.4788 -0.9025 32 1 0.3425 -2.9213 -3.5434 33 1 -0.0984 -4.2796 -4.6055 34 1 -0.9510 -4.0447 -3.0605 35 1 3.1224 -5.3531 -3.0789 36 1 2.2800 -5.0435 -4.6163 37 1 2.7213 -3.6854 -3.5542 38 1 1.3077 -6.9300 -2.4013 39 1 -0.3871 -6.3863 -2.3934 40 1 -0.4098 -9.3194 -6.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342278969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = 39.230683 kcal Electronic energy + Delta-G solvation = -20518.050123 eV Core-core repulsion = 17394.222764 eV Total energy + Delta-G solvation = -3123.827359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35539 -39.23250 -37.38454 -36.10723 -34.40456 -33.94268 -31.52230 -29.58037 -27.91441 -27.64542 -27.39016 -25.55829 -23.52009 -22.34215 -21.02321 -19.50423 -18.84636 -18.00868 -16.87289 -16.56726 -16.27041 -15.87639 -15.55359 -15.41083 -14.99385 -14.84229 -14.59641 -14.11266 -14.03512 -13.85519 -13.49429 -13.39208 -13.03159 -12.79496 -12.74340 -12.58134 -12.44685 -12.27528 -12.22086 -12.05591 -11.69948 -11.50197 -11.34452 -11.01580 -10.82898 -10.67779 -10.44212 -9.45836 -9.32145 -8.19510 -6.19945 0.62684 1.03992 1.38010 1.40037 1.50654 1.53361 1.83976 2.41640 3.15930 3.20712 3.58475 3.65995 3.92144 4.12937 4.21037 4.33355 4.38139 4.43572 4.49296 4.54476 4.72598 4.74805 4.79698 4.86078 4.93593 5.05631 5.10419 5.20472 5.35605 5.39056 5.47980 5.53514 5.63399 5.76619 5.82143 5.84570 6.00658 6.33907 6.44441 6.52128 6.88038 7.42621 8.96904 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003681 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.530592 B = 7604.796102 C = 8007.522700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.355 5.355 3 N -0.310 5.310 4 C 0.061 3.939 5 C -0.202 4.202 6 Cl -0.043 7.043 7 C 0.111 3.889 8 C 0.118 3.882 9 N -0.679 5.679 10 C 0.080 3.920 11 C -0.047 4.047 12 C -0.108 4.108 13 C -0.125 4.125 14 C -0.002 4.002 15 C -0.504 4.504 16 H 0.042 0.958 17 C 0.000 4.000 18 N -0.957 5.957 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.246 1.246 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.212 0.788 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.344 0.656 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 16.746 17.067 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.137 5.137 3 N -0.132 5.132 4 C -0.125 4.125 5 C -0.241 4.241 6 Cl -0.014 7.014 7 C -0.020 4.020 8 C -0.012 4.012 9 N -0.311 5.311 10 C -0.048 4.048 11 C -0.048 4.048 12 C -0.166 4.166 13 C -0.183 4.183 14 C -0.040 4.040 15 C -0.542 4.542 16 H 0.060 0.940 17 C -0.196 4.196 18 N -0.599 5.599 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.170 1.170 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.229 0.771 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.324 17.811 16.921 24.791 hybrid contribution 1.265 -2.107 0.028 2.457 sum 4.589 15.704 16.948 23.557 Atomic orbital electron populations 1.22247 0.71523 1.06088 1.04896 1.48534 1.07813 1.02451 1.54886 1.77442 1.01539 1.08822 1.25388 1.24194 0.96173 0.93125 0.98978 1.20687 0.88258 0.92157 1.23024 1.98329 1.37700 1.67566 1.97851 1.20791 0.89815 0.91387 1.00052 1.20555 1.02457 0.86571 0.91624 1.60559 1.38114 1.21063 1.11399 1.21922 1.00279 0.86851 0.95784 1.20343 0.95565 0.94789 0.94089 1.21509 0.97718 0.98551 0.98790 1.21701 0.96268 1.00154 1.00159 1.19590 0.95805 0.93740 0.94895 1.21451 1.42825 0.97053 0.92845 0.94003 1.25945 0.95603 1.00431 0.97615 1.70071 1.50324 1.19206 1.20280 0.85785 0.79403 0.77691 0.80492 1.19495 1.21804 1.16974 0.88728 0.88464 0.87689 0.77139 0.87794 0.91718 0.83637 0.94843 0.90205 0.91858 0.95691 0.93698 0.93626 0.94686 0.92094 0.96757 0.96549 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.10 127.77 1.42 2.63 16 2 N -0.35 -7.10 4.02 -355.92 -1.43 -8.53 16 3 N -0.31 -7.00 12.58 -56.97 -0.72 -7.72 16 4 C 0.06 1.21 12.02 85.25 1.02 2.24 16 5 C -0.20 -4.22 6.64 22.02 0.15 -4.07 16 6 Cl -0.04 -0.85 28.88 -2.72 -0.08 -0.93 16 7 C 0.11 2.25 6.45 41.40 0.27 2.52 16 8 C 0.12 2.18 5.52 85.56 0.47 2.65 16 9 N -0.68 -15.29 5.70 -517.93 -2.95 -18.25 16 10 C 0.08 2.13 4.65 86.30 0.40 2.53 16 11 C -0.05 -1.67 0.60 -52.18 -0.03 -1.70 16 12 C -0.11 -3.85 8.06 71.98 0.58 -3.27 16 13 C -0.13 -4.42 7.89 71.98 0.57 -3.85 16 14 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 15 C -0.50 -27.76 8.21 25.60 0.21 -27.55 16 16 H 0.04 2.55 5.92 -2.91 -0.02 2.54 16 17 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 18 N -0.96 -59.85 13.96 21.45 0.30 -59.55 16 19 Si 0.94 43.76 27.47 68.60 1.88 45.64 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 23 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.10 1.30 7.67 -2.39 -0.02 1.28 16 26 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.10 1.57 7.74 -2.39 -0.02 1.55 16 28 H 0.06 1.18 7.91 -2.39 -0.02 1.16 16 29 H 0.34 8.29 6.76 -89.69 -0.61 7.69 16 30 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.98 7.60 -2.39 -0.02 1.96 16 33 H 0.02 1.04 6.62 -2.39 -0.02 1.02 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 1.46 6.62 -2.39 -0.02 1.45 16 37 H 0.06 1.81 6.57 -2.39 -0.02 1.80 16 38 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 39 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -66.80 336.47 2.99 -63.81 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.37 Total: 12.98 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 5.61 Total: -27.46 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -4.80 Total: -94.04 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -66.80 2.99 -63.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342278969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.042 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds