Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99993 * 2 1 4 4 C 1.46900 * 111.00128 * 123.95486 * 2 1 3 5 5 C 1.53002 * 109.47200 * 170.00188 * 4 2 1 6 6 N 1.46500 * 109.47159 * 179.97438 * 5 4 2 7 7 N 1.40580 * 127.38506 * 269.95803 * 6 5 4 8 8 N 1.28905 * 106.83588 * 180.02562 * 7 6 5 9 9 N 1.28423 * 110.33647 * 359.72579 * 8 7 6 10 10 C 1.31542 * 110.50029 * 0.45729 * 9 8 7 11 11 S 1.76198 * 126.45130 * 179.81686 * 10 9 8 12 12 C 1.81002 * 100.00092 * 359.69140 * 11 10 9 13 13 C 1.52997 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00113 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47375 * 89.99678 * 19 17 15 21 21 H 1.48508 * 109.47196 * 209.99673 * 19 17 15 22 22 H 1.48504 * 109.47051 * 329.99297 * 19 17 15 23 23 H 1.08996 * 109.47194 * 296.04254 * 1 2 3 24 24 H 1.09007 * 109.47123 * 56.04875 * 1 2 3 25 25 H 1.08999 * 109.46770 * 176.04148 * 1 2 3 26 26 H 1.09000 * 109.47361 * 183.95404 * 3 2 1 27 27 H 1.09007 * 109.46820 * 303.95491 * 3 2 1 28 28 H 1.09001 * 109.46881 * 63.95352 * 3 2 1 29 29 H 1.08997 * 109.46914 * 50.00325 * 4 2 1 30 30 H 1.09004 * 109.46978 * 289.99894 * 4 2 1 31 31 H 1.08999 * 109.47201 * 59.99705 * 5 4 2 32 32 H 1.08998 * 109.46933 * 300.00204 * 5 4 2 33 33 H 1.09002 * 109.47154 * 300.00093 * 12 11 10 34 34 H 1.09001 * 109.47171 * 60.00111 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00184 * 13 12 11 36 36 H 1.08998 * 109.47533 * 59.99813 * 13 12 11 37 37 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 38 38 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 39 39 H 0.97008 * 120.00167 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1051 7 7 4.5174 -1.2119 3.3223 8 7 4.8769 -2.2263 4.0318 9 7 4.6612 -3.3181 3.3910 10 6 4.1497 -3.0635 2.2061 11 16 3.6987 -4.2496 0.9837 12 6 4.1519 -5.7760 1.8445 13 6 3.8404 -6.9776 0.9502 14 6 4.2240 -8.2678 1.6775 15 6 3.9166 -9.4514 0.7969 16 1 3.4906 -9.2988 -0.1838 17 6 4.1801 -10.7293 1.2426 18 7 3.9114 -11.7622 0.4742 19 14 4.9175 -10.9934 2.9384 20 1 3.8267 -11.1376 3.9356 21 1 5.7474 -12.2250 2.9310 22 1 5.7650 -9.8278 3.2967 23 1 -0.3633 0.4512 0.9233 24 1 -0.3634 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3433 -0.0709 27 1 1.5897 1.9164 -0.8525 28 1 1.7044 1.8724 0.9233 29 1 1.5090 -1.7407 1.1755 30 1 1.7976 -0.2247 2.0628 31 1 3.9910 0.0194 0.9323 32 1 3.7024 -1.4965 0.0451 33 1 5.2171 -5.7606 2.0750 34 1 3.5810 -5.8545 2.7697 35 1 2.7751 -6.9928 0.7200 36 1 4.4108 -6.8994 0.0247 37 1 5.2894 -8.2524 1.9073 38 1 3.6538 -8.3464 2.6031 39 1 4.0972 -12.6613 0.7877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345075688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 110.833436 kcal Electronic energy + Delta-G solvation = -19521.818308 eV Core-core repulsion = 16435.432335 eV Total energy + Delta-G solvation = -3086.385973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.98222 -38.38652 -35.33630 -34.73387 -32.38900 -32.09925 -30.34494 -28.21039 -28.12517 -25.88713 -23.92175 -23.29181 -22.85010 -21.66844 -20.31837 -18.23732 -17.23165 -16.76054 -16.66070 -16.14034 -15.58107 -15.04961 -14.98262 -14.87703 -14.47501 -14.05399 -13.34938 -13.15602 -12.79153 -12.68751 -12.61246 -12.35226 -12.29610 -12.23804 -12.17951 -11.63553 -11.54346 -11.18839 -11.16503 -10.88212 -10.68385 -10.60834 -10.05669 -9.85302 -9.74428 -9.27661 -9.00383 -8.58299 -8.08434 -6.08768 -4.08197 0.65103 0.72005 1.79549 2.00219 2.11346 3.30000 3.38039 3.41558 3.41647 3.91130 4.18332 4.42126 4.48558 4.60011 4.69001 4.78421 4.88095 5.02479 5.07998 5.16632 5.21419 5.25049 5.27666 5.28774 5.34025 5.39432 5.43993 5.79006 5.84720 6.22202 6.33037 6.33634 6.38301 6.67501 7.15726 7.28513 7.71042 8.28728 8.46451 8.94821 9.52886 11.04297 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.003162 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.890580 B = 8853.161264 C = 9771.598065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.015 3.985 4 C 0.038 3.962 5 C 0.125 3.875 6 N -0.368 5.368 7 N -0.091 5.091 8 N -0.033 5.033 9 N -0.333 5.333 10 C 0.223 3.777 11 S 0.024 5.976 12 C -0.103 4.103 13 C -0.090 4.090 14 C -0.006 4.006 15 C -0.524 4.524 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 25.844 -1.418 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.133 4.133 4 C -0.091 4.091 5 C 0.002 3.998 6 N -0.168 5.168 7 N -0.078 5.078 8 N -0.028 5.028 9 N -0.190 5.190 10 C -0.162 4.162 11 S 0.251 5.749 12 C -0.251 4.251 13 C -0.130 4.130 14 C -0.045 4.045 15 C -0.562 4.562 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.360 26.019 -1.659 26.434 hybrid contribution 0.249 0.047 1.966 1.983 sum -4.111 26.066 0.307 26.390 Atomic orbital electron populations 1.22417 0.85951 1.03070 1.00898 1.61878 1.08905 1.14077 1.41631 1.22548 1.01036 0.88567 1.01172 1.22441 0.93452 1.00330 0.92912 1.22023 0.94724 0.97939 0.85089 1.51530 1.45903 1.04221 1.15113 1.82420 1.16844 1.19017 0.89555 1.77863 1.11162 0.92726 1.21092 1.75021 1.21021 1.20377 1.02539 1.28057 0.99444 0.88778 0.99895 1.85994 1.76972 0.96673 1.15238 1.24117 1.06332 0.92006 1.02670 1.21382 1.02052 0.91719 0.97865 1.19559 0.96777 0.91976 0.96204 1.21063 1.42588 0.89303 1.03236 0.90856 1.25007 0.94997 0.96021 0.97307 1.69906 1.48399 0.98630 1.37069 0.86799 0.79834 0.77957 0.84868 1.20202 1.21335 1.18815 0.95344 0.90690 0.90692 0.91053 0.90682 0.95145 0.89182 0.93407 0.87348 0.86448 0.88311 0.88322 0.91405 0.91367 0.96079 0.96532 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.72 16 2 N -0.54 -3.65 5.02 -251.25 -1.26 -4.92 16 3 C 0.01 0.08 9.32 60.07 0.56 0.64 16 4 C 0.04 0.29 5.28 -3.82 -0.02 0.27 16 5 C 0.12 1.01 6.30 -4.04 -0.03 0.99 16 6 N -0.37 -4.42 3.69 -61.30 -0.23 -4.64 16 7 N -0.09 -1.31 13.93 60.35 0.84 -0.47 16 8 N -0.03 -0.53 13.38 60.35 0.81 0.28 16 9 N -0.33 -5.40 11.57 30.50 0.35 -5.05 16 10 C 0.22 3.05 8.15 -89.18 -0.73 2.32 16 11 S 0.02 0.30 21.79 -107.50 -2.34 -2.05 16 12 C -0.10 -1.53 5.23 37.16 0.19 -1.33 16 13 C -0.09 -1.60 5.16 -26.74 -0.14 -1.74 16 14 C -0.01 -0.13 4.04 -27.89 -0.11 -0.24 16 15 C -0.52 -14.36 9.66 -34.44 -0.33 -14.70 16 16 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 19 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.13 6.54 56.52 0.37 -5.77 16 23 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 26 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 27 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 30 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.11 0.71 6.55 -51.93 -0.34 0.37 16 32 H 0.12 0.86 7.85 -51.93 -0.41 0.45 16 33 H 0.10 1.49 8.14 -51.92 -0.42 1.06 16 34 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 38 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -31.49 341.08 -6.79 -38.28 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -6.08 Total: -5.47 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.12 Total: -11.22 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 1.29 Total: -41.32 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.34 Total: -2.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.49 -6.79 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345075688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.109 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds