Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99993 * 2 1 4 4 C 1.46900 * 111.00128 * 123.95486 * 2 1 3 5 5 C 1.53002 * 109.47200 * 170.00188 * 4 2 1 6 6 N 1.46500 * 109.47159 * 179.97438 * 5 4 2 7 7 N 1.40580 * 127.38506 * 269.95803 * 6 5 4 8 8 N 1.28905 * 106.83588 * 180.02562 * 7 6 5 9 9 N 1.28423 * 110.33647 * 359.72579 * 8 7 6 10 10 C 1.31542 * 110.50029 * 0.45729 * 9 8 7 11 11 S 1.76198 * 126.45130 * 179.81686 * 10 9 8 12 12 C 1.81002 * 100.00092 * 359.69140 * 11 10 9 13 13 C 1.52997 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00113 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47375 * 89.99678 * 19 17 15 21 21 H 1.48508 * 109.47196 * 209.99673 * 19 17 15 22 22 H 1.48504 * 109.47051 * 329.99297 * 19 17 15 23 23 H 1.08996 * 109.47194 * 296.04254 * 1 2 3 24 24 H 1.09007 * 109.47123 * 56.04875 * 1 2 3 25 25 H 1.08999 * 109.46770 * 176.04148 * 1 2 3 26 26 H 1.09000 * 109.47361 * 183.95404 * 3 2 1 27 27 H 1.09007 * 109.46820 * 303.95491 * 3 2 1 28 28 H 1.09001 * 109.46881 * 63.95352 * 3 2 1 29 29 H 1.08997 * 109.46914 * 50.00325 * 4 2 1 30 30 H 1.09004 * 109.46978 * 289.99894 * 4 2 1 31 31 H 1.08999 * 109.47201 * 59.99705 * 5 4 2 32 32 H 1.08998 * 109.46933 * 300.00204 * 5 4 2 33 33 H 1.09002 * 109.47154 * 300.00093 * 12 11 10 34 34 H 1.09001 * 109.47171 * 60.00111 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00184 * 13 12 11 36 36 H 1.08998 * 109.47533 * 59.99813 * 13 12 11 37 37 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 38 38 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 39 39 H 0.97008 * 120.00167 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1051 7 7 4.5174 -1.2119 3.3223 8 7 4.8769 -2.2263 4.0318 9 7 4.6612 -3.3181 3.3910 10 6 4.1497 -3.0635 2.2061 11 16 3.6987 -4.2496 0.9837 12 6 4.1519 -5.7760 1.8445 13 6 3.8404 -6.9776 0.9502 14 6 4.2240 -8.2678 1.6775 15 6 3.9166 -9.4514 0.7969 16 1 3.4906 -9.2988 -0.1838 17 6 4.1801 -10.7293 1.2426 18 7 3.9114 -11.7622 0.4742 19 14 4.9175 -10.9934 2.9384 20 1 3.8267 -11.1376 3.9356 21 1 5.7474 -12.2250 2.9310 22 1 5.7650 -9.8278 3.2967 23 1 -0.3633 0.4512 0.9233 24 1 -0.3634 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3433 -0.0709 27 1 1.5897 1.9164 -0.8525 28 1 1.7044 1.8724 0.9233 29 1 1.5090 -1.7407 1.1755 30 1 1.7976 -0.2247 2.0628 31 1 3.9910 0.0194 0.9323 32 1 3.7024 -1.4965 0.0451 33 1 5.2171 -5.7606 2.0750 34 1 3.5810 -5.8545 2.7697 35 1 2.7751 -6.9928 0.7200 36 1 4.4108 -6.8994 0.0247 37 1 5.2894 -8.2524 1.9073 38 1 3.6538 -8.3464 2.6031 39 1 4.0972 -12.6613 0.7877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345075688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 89.513203 kcal Electronic energy + Delta-G solvation = -19522.742822 eV Core-core repulsion = 16435.432335 eV Total energy + Delta-G solvation = -3087.310488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.05992 -38.95352 -36.46396 -36.13072 -34.17795 -33.41096 -31.09383 -29.95997 -28.54652 -26.69622 -25.27303 -24.46091 -23.98729 -22.31967 -21.90696 -19.29953 -18.76752 -18.12579 -17.71453 -16.73131 -16.52637 -16.30250 -16.14841 -15.76437 -15.55352 -15.16583 -14.71558 -14.22447 -13.91385 -13.85591 -13.82697 -13.68767 -13.18584 -13.07573 -12.78838 -12.74855 -12.65106 -12.45809 -12.17956 -12.15668 -11.96402 -11.76724 -11.58394 -11.54322 -11.41057 -11.32124 -10.73478 -9.50848 -9.09272 -8.26584 -6.30436 -0.39756 -0.32565 0.79970 0.96165 0.98140 1.39752 1.41729 1.52856 2.38842 2.89331 3.06048 3.09646 3.54164 3.60617 3.93418 3.94272 3.99332 4.05745 4.10814 4.23071 4.43533 4.49562 4.51997 4.56084 4.69766 4.72435 4.75233 4.88430 4.90573 5.02062 5.03193 5.05245 5.46351 5.54978 5.67221 5.82025 5.91890 6.29773 6.78025 7.18192 7.34369 8.89843 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.003162 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.890580 B = 8853.161264 C = 9771.598065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.012 3.988 4 C 0.045 3.955 5 C 0.118 3.882 6 N -0.354 5.354 7 N -0.093 5.093 8 N -0.057 5.057 9 N -0.358 5.358 10 C 0.213 3.787 11 S 0.079 5.921 12 C -0.107 4.107 13 C -0.081 4.081 14 C -0.007 4.007 15 C -0.530 4.530 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.245 1.245 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 27.798 -1.096 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.135 4.135 4 C -0.085 4.085 5 C -0.003 4.003 6 N -0.154 5.154 7 N -0.081 5.081 8 N -0.053 5.053 9 N -0.216 5.216 10 C -0.171 4.171 11 S 0.306 5.694 12 C -0.256 4.256 13 C -0.121 4.121 14 C -0.047 4.047 15 C -0.568 4.568 16 H 0.057 0.943 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.168 1.168 23 H 0.046 0.954 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.225 28.009 -1.352 28.358 hybrid contribution 0.120 -0.457 1.707 1.771 sum -4.105 27.551 0.356 27.858 Atomic orbital electron populations 1.22465 0.85446 1.03184 1.01406 1.61917 1.09451 1.14877 1.40846 1.22626 1.01565 0.87791 1.01563 1.22322 0.92978 1.00120 0.93046 1.22402 0.95116 0.98683 0.84079 1.51715 1.44776 1.03867 1.15072 1.82332 1.16596 1.18881 0.90245 1.77845 1.12403 0.93062 1.21960 1.74932 1.22049 1.20962 1.03624 1.28192 0.99481 0.89701 0.99699 1.85771 1.76324 0.94211 1.13110 1.23863 1.06541 0.92810 1.02373 1.21114 1.02059 0.91067 0.97823 1.19509 0.97009 0.92300 0.95872 1.21467 1.41388 0.91336 1.02618 0.94341 1.25959 0.95733 0.95811 1.01638 1.70059 1.50438 0.99251 1.39444 0.85732 0.79356 0.78361 0.79678 1.19306 1.21307 1.16793 0.95407 0.89514 0.90930 0.90280 0.89640 0.95331 0.89876 0.94269 0.85455 0.85102 0.88252 0.88193 0.91289 0.91305 0.95707 0.95844 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 127.69 1.22 1.44 16 2 N -0.55 -6.21 5.02 -948.81 -4.76 -10.97 16 3 C 0.01 0.10 9.32 127.69 1.19 1.29 16 4 C 0.05 0.61 5.28 86.30 0.46 1.06 16 5 C 0.12 1.62 6.30 86.38 0.54 2.16 16 6 N -0.35 -7.81 3.69 -347.87 -1.28 -9.09 16 7 N -0.09 -2.54 13.93 37.02 0.52 -2.02 16 8 N -0.06 -1.81 13.38 37.02 0.50 -1.31 16 9 N -0.36 -11.18 11.57 -57.41 -0.66 -11.84 16 10 C 0.21 5.44 8.15 179.85 1.47 6.91 16 11 S 0.08 1.76 21.79 -56.49 -1.23 0.53 16 12 C -0.11 -2.97 5.23 71.98 0.38 -2.59 16 13 C -0.08 -2.76 5.16 30.59 0.16 -2.60 16 14 C -0.01 -0.33 4.04 29.84 0.12 -0.20 16 15 C -0.53 -29.35 9.66 25.60 0.25 -29.11 16 16 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 17 C 0.01 0.31 5.47 84.65 0.46 0.78 16 18 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 19 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.24 -10.43 6.54 99.48 0.65 -9.77 16 23 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.09 0.64 8.12 -2.38 -0.02 0.62 16 25 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 26 H 0.08 0.51 6.47 -2.39 -0.02 0.50 16 27 H 0.08 0.53 8.12 -2.38 -0.02 0.51 16 28 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 30 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.13 1.31 6.55 -2.39 -0.02 1.29 16 32 H 0.13 1.50 7.85 -2.39 -0.02 1.49 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 38 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 39 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -68.10 341.08 2.47 -65.63 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 0.97 Total: 3.06 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 6.24 Total: -20.86 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -5.40 Total: -93.80 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.23 Total: 0.53 kcal Total: -68.10 2.47 -65.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345075688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.139 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds