Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99790 * 3 2 1 5 5 H 1.48500 * 109.46878 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.46796 * 149.99887 * 3 2 1 7 7 C 1.37875 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00231 * 179.97438 * 7 2 1 10 10 N 1.46891 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00426 * 189.99850 * 10 9 7 12 12 C 1.50699 * 109.47309 * 163.90889 * 11 10 9 13 13 C 1.39865 * 125.89753 * 95.35334 * 12 11 10 14 14 C 1.35318 * 107.92392 * 179.86420 * 13 12 11 15 15 N 1.34951 * 107.74195 * 0.39469 * 14 13 12 16 16 C 1.46502 * 126.04004 * 179.75221 * 15 14 13 17 17 F 1.39900 * 109.46469 * 299.97459 * 16 15 14 18 18 F 1.39899 * 109.46764 * 59.97276 * 16 15 14 19 19 N 1.30837 * 125.90052 * 275.66305 * 12 11 10 20 20 C 1.46898 * 111.00129 * 66.04898 * 10 9 7 21 21 C 1.53004 * 109.47297 * 57.15691 * 20 10 9 22 22 C 1.52997 * 117.49789 * 243.96019 * 21 20 10 23 23 C 1.52996 * 117.50131 * 175.30201 * 21 20 10 24 24 H 0.97004 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47190 * 59.99617 * 9 7 2 26 26 H 1.09000 * 109.47524 * 300.00399 * 9 7 2 27 27 H 1.08992 * 109.47175 * 283.91500 * 11 10 9 28 28 H 1.09005 * 109.46212 * 43.91096 * 11 10 9 29 29 H 1.08000 * 126.03780 * 359.97438 * 13 12 11 30 30 H 1.07988 * 126.13286 * 180.14608 * 14 13 12 31 31 H 1.08993 * 109.47347 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47749 * 177.15711 * 20 10 9 33 33 H 1.09003 * 109.47306 * 297.15996 * 20 10 9 34 34 H 1.08999 * 115.54664 * 29.62102 * 21 20 10 35 35 H 1.09005 * 117.50169 * 359.97438 * 22 21 20 36 36 H 1.09003 * 117.50216 * 145.01624 * 22 21 20 37 37 H 1.09002 * 117.49792 * 214.98059 * 23 21 20 38 38 H 1.09001 * 117.49934 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5789 -0.0010 11 6 5.4502 -2.6250 0.2366 12 6 5.8519 -4.0257 0.6210 13 6 6.3413 -5.0062 -0.2481 14 6 6.5875 -6.1211 0.4782 15 7 6.2569 -5.8583 1.7599 16 6 6.3600 -6.7907 2.8853 17 9 5.5607 -7.9116 2.6367 18 9 7.6915 -7.1918 3.0378 19 7 5.7977 -4.5364 1.8244 20 6 3.6513 -3.2611 -1.2540 21 6 4.2230 -2.4783 -2.4378 22 6 3.2286 -1.8676 -3.4272 23 6 4.0604 -3.0871 -3.8320 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 5.9767 -2.3324 -0.6717 28 1 5.7080 -1.9387 1.0432 29 1 6.4972 -4.8929 -1.3107 30 1 6.9748 -7.0552 0.0994 31 1 6.0221 -6.2984 3.7971 32 1 4.0690 -4.2679 -1.2486 33 1 2.5667 -3.3183 -1.3461 34 1 5.1378 -1.9213 -2.2353 35 1 2.1670 -2.0239 -3.2351 36 1 3.4893 -0.9091 -3.8760 37 1 4.8682 -2.9304 -4.5469 38 1 3.5466 -4.0455 -3.9059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347672338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = 24.538659 kcal Electronic energy + Delta-G solvation = -22553.102826 eV Core-core repulsion = 18876.841693 eV Total energy + Delta-G solvation = -3676.261133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.51949 -47.62007 -41.16716 -38.13246 -35.29173 -33.00926 -32.11534 -30.25239 -28.51437 -27.34267 -25.61626 -23.70413 -21.88601 -21.42960 -21.29162 -20.31445 -18.91540 -18.46564 -17.98255 -17.49126 -16.70222 -15.71671 -15.16486 -14.84937 -14.52101 -14.35566 -14.23093 -13.98837 -13.89046 -13.82550 -13.57018 -13.15305 -12.73254 -12.33282 -12.21760 -11.97375 -11.46792 -11.39251 -11.14443 -10.99691 -10.78574 -10.55256 -10.30957 -9.97996 -9.83845 -9.47187 -9.31545 -9.21659 -8.82639 -8.53536 -7.38390 -6.01267 -3.97367 1.65683 1.77290 2.78744 3.29911 3.33468 3.38130 3.39491 3.96304 4.28578 4.45001 4.45214 4.59327 4.72789 4.94829 5.20854 5.28414 5.33624 5.44536 5.47614 5.63478 5.76184 5.83026 5.96197 6.04613 6.05975 6.22568 6.37049 6.44467 6.50548 6.66835 6.69001 6.80389 6.92079 7.02732 7.59507 7.65416 7.88438 8.03270 8.68417 9.07357 9.60713 11.12013 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.004335 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.047648 B = 6457.343851 C = 7182.215573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.162 3.838 10 N -0.514 5.514 11 C 0.121 3.879 12 C 0.119 3.881 13 C -0.246 4.246 14 C 0.058 3.942 15 N -0.442 5.442 16 C 0.505 3.495 17 F -0.184 7.184 18 F -0.187 7.187 19 N -0.259 5.259 20 C 0.094 3.906 21 C -0.175 4.175 22 C -0.162 4.162 23 C -0.189 4.189 24 H 0.262 0.738 25 H 0.026 0.974 26 H -0.005 1.005 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -11.649 -0.613 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.237 5.237 11 C -0.009 4.009 12 C -0.052 4.052 13 C -0.275 4.275 14 C -0.083 4.083 15 N -0.234 5.234 16 C 0.369 3.631 17 F -0.166 7.166 18 F -0.168 7.168 19 N -0.079 5.079 20 C -0.034 4.034 21 C -0.195 4.195 22 C -0.199 4.199 23 C -0.227 4.227 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.012 0.988 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.170 0.830 30 H 0.191 0.809 31 H 0.180 0.820 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.239 -11.741 1.153 18.491 hybrid contribution 1.077 0.969 -1.632 2.183 sum 15.316 -10.772 -0.479 18.731 Atomic orbital electron populations 1.69888 1.06088 1.26674 1.51476 1.24836 0.94633 0.98599 0.95028 0.86927 0.80430 0.84367 0.78412 1.20363 1.21332 1.19206 1.20930 0.88514 0.94545 1.49739 0.90314 1.20230 0.97274 0.83536 0.95306 1.62129 1.08508 1.19778 1.33262 1.20524 0.91517 0.88513 1.00379 1.22570 0.95246 0.97305 0.90045 1.21569 1.11655 0.93054 1.01188 1.22535 1.00365 1.00754 0.84654 1.49718 1.54845 1.11922 1.06888 1.20821 0.74074 0.77552 0.90625 1.93124 1.73543 1.54604 1.95279 1.93109 1.36879 1.91358 1.95483 1.77510 1.20092 0.87908 1.22346 1.21750 1.01486 0.95234 0.84922 1.22948 1.00946 1.03843 0.91788 1.22918 0.98266 0.96004 1.02683 1.22896 1.03407 0.98158 0.98196 0.92778 0.95571 0.98752 0.92690 0.89681 0.82978 0.80936 0.81969 0.92044 0.89512 0.88777 0.87997 0.89856 0.89872 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.50 -13.73 9.11 -34.44 -0.31 -14.04 16 8 H 0.08 2.39 7.34 -52.49 -0.39 2.01 16 9 C 0.16 3.77 3.56 -4.98 -0.02 3.76 16 10 N -0.51 -10.38 4.65 -237.52 -1.10 -11.48 16 11 C 0.12 2.02 5.42 -4.97 -0.03 1.99 16 12 C 0.12 1.88 6.14 -82.41 -0.51 1.37 16 13 C -0.25 -3.22 9.72 -40.01 -0.39 -3.61 16 14 C 0.06 0.69 11.40 -17.22 -0.20 0.50 16 15 N -0.44 -5.87 3.87 -66.66 -0.26 -6.13 16 16 C 0.50 5.08 6.39 59.85 0.38 5.46 16 17 F -0.18 -1.99 17.48 2.25 0.04 -1.95 16 18 F -0.19 -1.87 17.48 2.25 0.04 -1.83 16 19 N -0.26 -4.24 12.58 33.67 0.42 -3.81 16 20 C 0.09 1.74 5.28 -3.82 -0.02 1.72 16 21 C -0.18 -2.88 3.93 -90.62 -0.36 -3.24 16 22 C -0.16 -2.74 10.18 -26.70 -0.27 -3.01 16 23 C -0.19 -2.65 10.25 -26.70 -0.27 -2.92 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.63 6.92 -51.93 -0.36 0.27 16 26 H -0.01 -0.12 6.12 -51.93 -0.32 -0.44 16 27 H 0.06 0.82 6.11 -51.93 -0.32 0.50 16 28 H 0.08 1.43 7.81 -51.93 -0.41 1.02 16 29 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.16 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 33 H 0.09 1.83 6.67 -51.93 -0.35 1.48 16 34 H 0.09 1.51 6.28 -51.93 -0.33 1.19 16 35 H 0.10 1.92 8.03 -51.93 -0.42 1.51 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -31.46 323.87 -6.88 -38.34 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.92 Total: 2.10 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.09 Total: -10.14 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.16 Total: -47.91 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.46 -6.88 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347672338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.881 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds