Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99896 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99790 * 3 2 1 5 5 H 1.48500 * 109.46878 * 30.00128 * 3 2 1 6 6 H 1.48498 * 109.46796 * 149.99887 * 3 2 1 7 7 C 1.37875 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00231 * 179.97438 * 7 2 1 10 10 N 1.46891 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00426 * 189.99850 * 10 9 7 12 12 C 1.50699 * 109.47309 * 163.90889 * 11 10 9 13 13 C 1.39865 * 125.89753 * 95.35334 * 12 11 10 14 14 C 1.35318 * 107.92392 * 179.86420 * 13 12 11 15 15 N 1.34951 * 107.74195 * 0.39469 * 14 13 12 16 16 C 1.46502 * 126.04004 * 179.75221 * 15 14 13 17 17 F 1.39900 * 109.46469 * 299.97459 * 16 15 14 18 18 F 1.39899 * 109.46764 * 59.97276 * 16 15 14 19 19 N 1.30837 * 125.90052 * 275.66305 * 12 11 10 20 20 C 1.46898 * 111.00129 * 66.04898 * 10 9 7 21 21 C 1.53004 * 109.47297 * 57.15691 * 20 10 9 22 22 C 1.52997 * 117.49789 * 243.96019 * 21 20 10 23 23 C 1.52996 * 117.50131 * 175.30201 * 21 20 10 24 24 H 0.97004 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47190 * 59.99617 * 9 7 2 26 26 H 1.09000 * 109.47524 * 300.00399 * 9 7 2 27 27 H 1.08992 * 109.47175 * 283.91500 * 11 10 9 28 28 H 1.09005 * 109.46212 * 43.91096 * 11 10 9 29 29 H 1.08000 * 126.03780 * 359.97438 * 13 12 11 30 30 H 1.07988 * 126.13286 * 180.14608 * 14 13 12 31 31 H 1.08993 * 109.47347 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47749 * 177.15711 * 20 10 9 33 33 H 1.09003 * 109.47306 * 297.15996 * 20 10 9 34 34 H 1.08999 * 115.54664 * 29.62102 * 21 20 10 35 35 H 1.09005 * 117.50169 * 359.97438 * 22 21 20 36 36 H 1.09003 * 117.50216 * 145.01624 * 22 21 20 37 37 H 1.09002 * 117.49792 * 214.98059 * 23 21 20 38 38 H 1.09001 * 117.49934 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5789 -0.0010 11 6 5.4502 -2.6250 0.2366 12 6 5.8519 -4.0257 0.6210 13 6 6.3413 -5.0062 -0.2481 14 6 6.5875 -6.1211 0.4782 15 7 6.2569 -5.8583 1.7599 16 6 6.3600 -6.7907 2.8853 17 9 5.5607 -7.9116 2.6367 18 9 7.6915 -7.1918 3.0378 19 7 5.7977 -4.5364 1.8244 20 6 3.6513 -3.2611 -1.2540 21 6 4.2230 -2.4783 -2.4378 22 6 3.2286 -1.8676 -3.4272 23 6 4.0604 -3.0871 -3.8320 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 5.9767 -2.3324 -0.6717 28 1 5.7080 -1.9387 1.0432 29 1 6.4972 -4.8929 -1.3107 30 1 6.9748 -7.0552 0.0994 31 1 6.0221 -6.2984 3.7971 32 1 4.0690 -4.2679 -1.2486 33 1 2.5667 -3.3183 -1.3461 34 1 5.1378 -1.9213 -2.2353 35 1 2.1670 -2.0239 -3.2351 36 1 3.4893 -0.9091 -3.8760 37 1 4.8682 -2.9304 -4.5469 38 1 3.5466 -4.0455 -3.9059 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347672338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = 3.652761 kcal Electronic energy + Delta-G solvation = -22554.008507 eV Core-core repulsion = 18876.841693 eV Total energy + Delta-G solvation = -3677.166814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.33042 -48.43015 -42.20571 -39.56540 -36.67304 -34.75893 -33.61195 -31.26381 -30.24778 -28.75194 -26.82779 -25.17424 -23.13076 -23.05206 -22.25501 -21.61303 -20.24355 -19.39328 -18.82425 -18.79317 -18.29342 -17.12879 -16.60229 -16.16261 -15.82579 -15.67592 -15.42949 -15.05680 -15.01424 -14.77210 -14.64901 -14.47661 -14.22852 -13.94270 -13.55676 -13.15676 -12.99753 -12.81888 -12.63189 -12.49985 -12.27725 -12.08664 -11.80510 -11.65383 -11.48588 -11.11079 -10.75169 -10.61206 -10.59814 -9.82495 -8.93469 -8.21224 -6.22257 0.65324 0.86904 1.37232 1.39545 1.49389 1.70542 2.39324 2.55652 3.00496 3.13876 3.17885 3.40981 3.65213 3.68119 3.82611 3.91431 4.11461 4.17330 4.27561 4.51441 4.58376 4.64935 4.72525 4.77708 4.86285 4.96996 4.97194 5.07403 5.13770 5.20231 5.37182 5.42882 5.46311 5.62087 5.77614 6.03468 6.38572 6.58638 6.69920 6.82414 7.40090 8.95792 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.004335 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.047648 B = 6457.343851 C = 7182.215573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.498 4.498 8 H 0.031 0.969 9 C 0.176 3.824 10 N -0.536 5.536 11 C 0.125 3.875 12 C 0.101 3.899 13 C -0.253 4.253 14 C 0.064 3.936 15 N -0.446 5.446 16 C 0.505 3.495 17 F -0.188 7.188 18 F -0.184 7.184 19 N -0.296 5.296 20 C 0.104 3.896 21 C -0.182 4.182 22 C -0.188 4.188 23 C -0.150 4.150 24 H 0.264 0.736 25 H 0.023 0.977 26 H 0.004 0.996 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.174 0.826 30 H 0.209 0.791 31 H 0.187 0.813 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.967 -12.085 -1.512 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.049 3.951 10 N -0.259 5.259 11 C -0.004 4.004 12 C -0.068 4.068 13 C -0.281 4.281 14 C -0.077 4.077 15 N -0.238 5.238 16 C 0.371 3.629 17 F -0.169 7.169 18 F -0.166 7.166 19 N -0.117 5.117 20 C -0.024 4.024 21 C -0.202 4.202 22 C -0.225 4.225 23 C -0.187 4.187 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.022 0.978 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.191 0.809 30 H 0.225 0.775 31 H 0.204 0.796 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.334 -12.203 0.255 21.200 hybrid contribution 0.092 0.924 -1.318 1.612 sum 17.425 -11.279 -1.064 20.785 Atomic orbital electron populations 1.70055 1.08148 1.27756 1.53392 1.25729 0.95413 1.02757 0.94712 0.85824 0.79608 0.79063 0.79143 1.19072 1.21339 1.17118 1.21120 0.90998 0.92747 1.48773 0.95036 1.19923 0.94148 0.85739 0.95283 1.61931 1.11395 1.17868 1.34668 1.20485 0.89096 0.89622 1.01201 1.22508 0.96230 0.97288 0.90784 1.21806 1.11689 0.92544 1.02100 1.23159 0.98824 1.01724 0.83993 1.49944 1.54295 1.11358 1.08221 1.21151 0.74056 0.77145 0.90576 1.93117 1.73707 1.54793 1.95307 1.93114 1.36792 1.91292 1.95364 1.77403 1.21385 0.89702 1.23166 1.21560 0.99101 0.96395 0.85390 1.22865 1.00822 1.04427 0.92041 1.22852 0.96830 0.98108 1.04691 1.22980 1.02483 0.96821 0.96466 0.92742 0.95898 0.97792 0.90380 0.90251 0.80891 0.77454 0.79649 0.90285 0.93707 0.87532 0.91379 0.89226 0.86766 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.94 43.82 27.47 68.60 1.88 45.71 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.50 -28.50 9.11 25.60 0.23 -28.27 16 8 H 0.03 2.05 7.34 -2.91 -0.02 2.03 16 9 C 0.18 8.18 3.56 85.56 0.30 8.49 16 10 N -0.54 -21.63 4.65 -905.37 -4.21 -25.84 16 11 C 0.13 4.02 5.42 85.56 0.46 4.48 16 12 C 0.10 3.05 6.14 43.10 0.26 3.31 16 13 C -0.25 -5.92 9.72 21.99 0.21 -5.71 16 14 C 0.06 1.35 11.40 83.54 0.95 2.30 16 15 N -0.45 -10.95 3.87 -364.81 -1.41 -12.36 16 16 C 0.50 9.14 6.39 127.77 0.82 9.96 16 17 F -0.19 -3.71 17.48 44.97 0.79 -2.93 16 18 F -0.18 -3.26 17.48 44.97 0.79 -2.48 16 19 N -0.30 -9.35 12.58 -47.39 -0.60 -9.95 16 20 C 0.10 3.81 5.28 86.30 0.46 4.27 16 21 C -0.18 -5.67 3.93 -10.79 -0.04 -5.72 16 22 C -0.19 -6.27 10.18 30.62 0.31 -5.96 16 23 C -0.15 -3.77 10.25 30.62 0.31 -3.46 16 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.02 1.08 6.92 -2.38 -0.02 1.07 16 26 H 0.00 0.20 6.12 -2.39 -0.01 0.18 16 27 H 0.08 2.12 6.11 -2.39 -0.01 2.10 16 28 H 0.08 2.59 7.81 -2.38 -0.02 2.57 16 29 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.21 2.70 8.06 -2.92 -0.02 2.68 16 31 H 0.19 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.59 6.52 -2.39 -0.02 2.57 16 33 H 0.04 2.00 6.67 -2.39 -0.02 1.98 16 34 H 0.11 3.09 6.28 -2.39 -0.01 3.08 16 35 H 0.07 2.71 8.03 -2.38 -0.02 2.69 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.06 323.87 3.31 -67.76 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.02 Total: 14.87 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.75 Total: -15.24 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -5.92 Total: -107.68 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.57 Total: -5.40 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -71.06 3.31 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347672338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.409 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds