Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99491 * 2 1 4 4 H 1.48503 * 109.47026 * 269.99644 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.46940 * 150.00043 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 159.35251 * 7 2 1 9 9 N 1.36933 * 120.00225 * 339.34475 * 7 2 1 10 10 C 1.46506 * 119.99941 * 321.45659 * 9 7 2 11 11 C 1.50702 * 109.47036 * 269.99734 * 10 9 7 12 12 C 1.39869 * 125.89535 * 94.71805 * 11 10 9 13 13 C 1.35312 * 107.91960 * 179.86464 * 12 11 10 14 14 N 1.34946 * 107.74479 * 0.39031 * 13 12 11 15 15 C 1.46506 * 126.03905 * 179.75236 * 14 13 12 16 16 F 1.39899 * 109.47092 * 209.97975 * 15 14 13 17 17 F 1.39901 * 109.47157 * 329.97466 * 15 14 13 18 18 N 1.30833 * 125.90237 * 275.02613 * 11 10 9 19 19 C 1.46498 * 120.00146 * 141.45814 * 9 7 2 20 20 C 1.55238 * 110.47073 * 60.04771 * 19 9 7 21 21 C 1.54893 * 102.58659 * 203.39748 * 20 19 9 22 22 C 1.54266 * 104.31216 * 37.93235 * 21 20 19 23 23 C 1.53874 * 106.59940 * 336.31972 * 22 21 20 24 24 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46659 * 30.00007 * 10 9 7 26 26 H 1.08997 * 109.46995 * 149.99551 * 10 9 7 27 27 H 1.08001 * 126.04411 * 359.97438 * 12 11 10 28 28 H 1.08001 * 126.13218 * 180.14694 * 13 12 11 29 29 H 1.08992 * 109.47153 * 89.97719 * 15 14 13 30 30 H 1.09003 * 110.43463 * 182.70011 * 19 9 7 31 31 H 1.08993 * 110.89959 * 85.10410 * 20 19 9 32 32 H 1.09001 * 110.76503 * 321.62313 * 20 19 9 33 33 H 1.08994 * 110.48263 * 279.18377 * 21 20 19 34 34 H 1.08997 * 110.48292 * 156.67712 * 21 20 19 35 35 H 1.08996 * 110.03238 * 95.60794 * 22 21 20 36 36 H 1.09003 * 110.02908 * 216.98551 * 22 21 20 37 37 H 1.09009 * 110.02780 * 119.28965 * 23 22 21 38 38 H 1.08997 * 110.03337 * 240.66599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0383 -1.2319 -0.3304 9 7 1.3917 -2.3501 0.4173 10 6 0.4705 -2.3131 1.5558 11 6 1.2362 -2.5617 2.8298 12 6 1.7531 -1.5795 3.6809 13 6 2.3675 -2.2037 4.7123 14 7 2.2513 -3.5337 4.5162 15 6 2.7789 -4.5834 5.3915 16 9 3.0906 -5.7138 4.6285 17 9 3.9334 -4.1202 6.0317 18 7 1.5372 -3.7335 3.3278 19 6 1.6511 -3.6153 -0.2743 20 6 3.1594 -3.9750 -0.2006 21 6 3.3427 -4.9129 -1.4196 22 6 2.4439 -4.2980 -2.5123 23 6 1.3683 -3.4731 -1.7841 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0079 -1.3349 1.6044 26 1 -0.2903 -3.0839 1.4328 27 1 1.6742 -0.5115 3.5407 28 1 2.8655 -1.7235 5.5417 29 1 2.0292 -4.8446 6.1383 30 1 1.0453 -4.4141 0.1537 31 1 3.3895 -4.4982 0.7274 32 1 3.7752 -3.0816 -0.3046 33 1 3.0119 -5.9227 -1.1770 34 1 4.3839 -4.9206 -1.7418 35 1 3.0345 -3.6516 -3.1614 36 1 1.9757 -5.0885 -3.0990 37 1 1.4369 -2.4262 -2.0799 38 1 0.3774 -3.8626 -2.0175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347681746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = -1.129171 kcal Electronic energy + Delta-G solvation = -23298.622965 eV Core-core repulsion = 19621.248791 eV Total energy + Delta-G solvation = -3677.374174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.22766 -47.34463 -40.53466 -37.58213 -34.56432 -32.30268 -30.89320 -29.56876 -27.77660 -27.57589 -26.11794 -24.76789 -22.45599 -20.80561 -19.76598 -19.32474 -19.05868 -18.11967 -17.97093 -17.11725 -16.25937 -15.35111 -14.76861 -14.39808 -14.30011 -14.15998 -14.02455 -13.74685 -13.48746 -13.15447 -12.91391 -12.79465 -12.48609 -12.13747 -12.05674 -11.32730 -11.13467 -10.87983 -10.67430 -10.53734 -10.39790 -10.30242 -10.22215 -10.05467 -9.74913 -9.68927 -9.42311 -8.81197 -8.47826 -8.22996 -6.57129 -5.83415 -3.39446 2.09180 2.36515 3.33087 3.42342 3.45165 3.48385 3.53894 4.19096 4.47377 4.53718 5.06574 5.26620 5.39472 5.47499 5.49870 5.66900 5.82983 5.94303 6.25753 6.30002 6.31180 6.33836 6.45175 6.53325 6.61805 6.66342 6.70312 6.81682 6.93192 7.08081 7.12270 7.21282 7.30180 7.43715 7.51232 7.85056 8.26273 8.53135 9.16400 9.78446 10.38074 11.18217 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.006821 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.919816 B = 4103.798614 C = 5491.894087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.017 3.983 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.562 5.562 10 C 0.214 3.786 11 C 0.102 3.898 12 C -0.227 4.227 13 C 0.040 3.960 14 N -0.456 5.456 15 C 0.515 3.485 16 F -0.179 7.179 17 F -0.191 7.191 18 N -0.287 5.287 19 C 0.175 3.825 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.131 4.131 24 H 0.256 0.744 25 H 0.116 0.884 26 H 0.043 0.957 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -6.796 8.216 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.183 4.183 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.279 5.279 10 C 0.084 3.916 11 C -0.070 4.070 12 C -0.256 4.256 13 C -0.100 4.100 14 N -0.249 5.249 15 C 0.379 3.621 16 F -0.160 7.160 17 F -0.173 7.173 18 N -0.107 5.107 19 C 0.068 3.932 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.170 4.170 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.061 0.939 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.802 -8.033 8.177 11.800 hybrid contribution 0.987 1.765 0.253 2.038 sum 3.789 -6.269 8.430 11.168 Atomic orbital electron populations 1.69962 1.05443 1.25855 1.51483 1.25154 0.94949 0.98543 0.99651 0.86483 0.79677 0.83845 0.77913 1.21277 1.21424 1.20312 1.18863 0.93916 0.85123 1.40079 0.92240 1.43732 1.51981 1.03882 1.28340 1.19661 0.89494 1.03278 0.79124 1.24545 0.96441 0.88844 0.97143 1.21603 1.07037 1.01032 0.95959 1.22290 1.02679 0.83390 1.01648 1.49835 1.47922 1.04929 1.22236 1.21072 0.82795 0.74623 0.83570 1.93100 1.93776 1.51004 1.78124 1.93087 1.53702 1.89216 1.81272 1.77498 1.15107 1.23436 0.94658 1.21313 0.92823 0.88130 0.90937 1.22901 1.00111 0.98385 0.95771 1.22276 0.98482 0.98578 0.96710 1.22066 0.97680 0.98556 0.97455 1.22492 0.96203 1.01431 0.96895 0.93406 0.86674 0.93880 0.83415 0.81440 0.83903 0.92848 0.93310 0.91320 0.92745 0.93100 0.92782 0.93351 0.89711 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 11.49 55.49 0.64 -23.10 16 2 C 0.02 0.45 4.96 -17.43 -0.09 0.37 16 3 Si 0.89 20.64 29.60 -169.99 -5.03 15.61 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.43 7.73 -15.06 -0.12 -6.55 16 8 H 0.06 1.58 6.72 -52.48 -0.35 1.23 16 9 N -0.56 -13.41 2.44 -164.92 -0.40 -13.81 16 10 C 0.21 4.90 5.84 -5.19 -0.03 4.87 16 11 C 0.10 2.16 6.80 -82.41 -0.56 1.60 16 12 C -0.23 -4.34 10.74 -40.01 -0.43 -4.77 16 13 C 0.04 0.65 11.05 -17.23 -0.19 0.46 16 14 N -0.46 -7.67 3.97 -66.66 -0.26 -7.93 16 15 C 0.51 6.51 6.63 59.85 0.40 6.91 16 16 F -0.18 -2.67 17.36 2.25 0.04 -2.63 16 17 F -0.19 -2.37 17.02 2.25 0.04 -2.33 16 18 N -0.29 -5.81 12.41 33.67 0.42 -5.40 16 19 C 0.18 3.77 3.40 -66.08 -0.22 3.55 16 20 C -0.13 -2.66 6.47 -24.55 -0.16 -2.82 16 21 C -0.12 -2.08 6.82 -25.07 -0.17 -2.25 16 22 C -0.12 -2.05 6.80 -25.61 -0.17 -2.23 16 23 C -0.13 -2.67 6.41 -25.61 -0.16 -2.83 16 24 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 25 H 0.12 2.87 5.56 -51.93 -0.29 2.58 16 26 H 0.04 0.96 7.92 -51.93 -0.41 0.55 16 27 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 28 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.98 6.92 -51.92 -0.36 1.62 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -28.78 322.26 -6.72 -35.50 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.10 Total: 2.93 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.91 Total: -3.70 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.39 Total: -50.23 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.08 Total: -4.96 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.78 -6.72 -35.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347681746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.372 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds