Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99491 * 2 1 4 4 H 1.48503 * 109.47026 * 269.99644 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.46940 * 150.00043 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 159.35251 * 7 2 1 9 9 N 1.36933 * 120.00225 * 339.34475 * 7 2 1 10 10 C 1.46506 * 119.99941 * 321.45659 * 9 7 2 11 11 C 1.50702 * 109.47036 * 269.99734 * 10 9 7 12 12 C 1.39869 * 125.89535 * 94.71805 * 11 10 9 13 13 C 1.35312 * 107.91960 * 179.86464 * 12 11 10 14 14 N 1.34946 * 107.74479 * 0.39031 * 13 12 11 15 15 C 1.46506 * 126.03905 * 179.75236 * 14 13 12 16 16 F 1.39899 * 109.47092 * 209.97975 * 15 14 13 17 17 F 1.39901 * 109.47157 * 329.97466 * 15 14 13 18 18 N 1.30833 * 125.90237 * 275.02613 * 11 10 9 19 19 C 1.46498 * 120.00146 * 141.45814 * 9 7 2 20 20 C 1.55238 * 110.47073 * 60.04771 * 19 9 7 21 21 C 1.54893 * 102.58659 * 203.39748 * 20 19 9 22 22 C 1.54266 * 104.31216 * 37.93235 * 21 20 19 23 23 C 1.53874 * 106.59940 * 336.31972 * 22 21 20 24 24 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46659 * 30.00007 * 10 9 7 26 26 H 1.08997 * 109.46995 * 149.99551 * 10 9 7 27 27 H 1.08001 * 126.04411 * 359.97438 * 12 11 10 28 28 H 1.08001 * 126.13218 * 180.14694 * 13 12 11 29 29 H 1.08992 * 109.47153 * 89.97719 * 15 14 13 30 30 H 1.09003 * 110.43463 * 182.70011 * 19 9 7 31 31 H 1.08993 * 110.89959 * 85.10410 * 20 19 9 32 32 H 1.09001 * 110.76503 * 321.62313 * 20 19 9 33 33 H 1.08994 * 110.48263 * 279.18377 * 21 20 19 34 34 H 1.08997 * 110.48292 * 156.67712 * 21 20 19 35 35 H 1.08996 * 110.03238 * 95.60794 * 22 21 20 36 36 H 1.09003 * 110.02908 * 216.98551 * 22 21 20 37 37 H 1.09009 * 110.02780 * 119.28965 * 23 22 21 38 38 H 1.08997 * 110.03337 * 240.66599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0383 -1.2319 -0.3304 9 7 1.3917 -2.3501 0.4173 10 6 0.4705 -2.3131 1.5558 11 6 1.2362 -2.5617 2.8298 12 6 1.7531 -1.5795 3.6809 13 6 2.3675 -2.2037 4.7123 14 7 2.2513 -3.5337 4.5162 15 6 2.7789 -4.5834 5.3915 16 9 3.0906 -5.7138 4.6285 17 9 3.9334 -4.1202 6.0317 18 7 1.5372 -3.7335 3.3278 19 6 1.6511 -3.6153 -0.2743 20 6 3.1594 -3.9750 -0.2006 21 6 3.3427 -4.9129 -1.4196 22 6 2.4439 -4.2980 -2.5123 23 6 1.3683 -3.4731 -1.7841 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0079 -1.3349 1.6044 26 1 -0.2903 -3.0839 1.4328 27 1 1.6742 -0.5115 3.5407 28 1 2.8655 -1.7235 5.5417 29 1 2.0292 -4.8446 6.1383 30 1 1.0453 -4.4141 0.1537 31 1 3.3895 -4.4982 0.7274 32 1 3.7752 -3.0816 -0.3046 33 1 3.0119 -5.9227 -1.1770 34 1 4.3839 -4.9206 -1.7418 35 1 3.0345 -3.6516 -3.1614 36 1 1.9757 -5.0885 -3.0990 37 1 1.4369 -2.4262 -2.0799 38 1 0.3774 -3.8626 -2.0175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347681746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = -16.710703 kcal Electronic energy + Delta-G solvation = -23299.298631 eV Core-core repulsion = 19621.248791 eV Total energy + Delta-G solvation = -3678.049840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.26352 -48.39736 -41.96840 -39.24239 -36.27841 -33.87648 -32.66359 -30.99311 -29.36090 -29.12480 -27.89416 -26.16526 -24.17591 -22.14318 -21.33544 -20.84927 -20.72180 -19.34575 -18.98830 -18.30012 -18.04293 -17.06880 -16.52120 -16.01619 -15.67970 -15.54761 -15.20916 -15.05068 -14.77269 -14.62999 -14.55876 -14.14124 -14.08316 -13.71232 -13.27266 -13.12607 -12.85340 -12.69392 -12.45663 -12.23081 -11.97793 -11.91668 -11.81964 -11.78823 -11.42274 -11.25429 -11.09997 -10.44994 -10.30100 -9.64262 -8.49256 -7.79860 -5.39944 0.75788 1.13480 1.47156 1.51299 1.59797 1.90982 2.55534 2.61129 3.05755 3.30174 3.63893 3.71446 3.88703 3.96863 4.00137 4.16614 4.29272 4.43047 4.65015 4.74151 4.83056 4.89688 4.91295 4.96027 5.02692 5.15126 5.17811 5.24041 5.30972 5.48393 5.52830 5.62986 5.68153 5.72304 5.82950 5.91777 6.53487 6.78015 7.21011 7.87595 8.44231 9.18912 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.006821 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.919816 B = 4103.798614 C = 5491.894087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.021 4.021 3 Si 0.946 3.054 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.046 0.954 9 N -0.574 5.574 10 C 0.220 3.780 11 C 0.084 3.916 12 C -0.264 4.264 13 C 0.071 3.929 14 N -0.455 5.455 15 C 0.510 3.490 16 F -0.194 7.194 17 F -0.187 7.187 18 N -0.309 5.309 19 C 0.168 3.832 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.127 4.127 24 H 0.254 0.746 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.142 0.858 28 H 0.215 0.785 29 H 0.202 0.798 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -7.899 9.432 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.775 3.225 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.064 0.936 9 N -0.293 5.293 10 C 0.091 3.909 11 C -0.087 4.087 12 C -0.293 4.293 13 C -0.071 4.071 14 N -0.247 5.247 15 C 0.377 3.623 16 F -0.175 7.175 17 F -0.168 7.168 18 N -0.131 5.131 19 C 0.062 3.938 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.166 4.166 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.160 0.840 28 H 0.231 0.769 29 H 0.218 0.782 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.139 -9.166 9.397 13.764 hybrid contribution 0.604 2.024 -0.015 2.112 sum 4.743 -7.142 9.383 12.710 Atomic orbital electron populations 1.70066 1.06438 1.26128 1.52761 1.25669 0.95511 1.00756 0.99920 0.85633 0.78542 0.80843 0.77517 1.21450 1.21213 1.20253 1.18847 0.93331 0.86132 1.39662 0.93595 1.43849 1.51977 1.04178 1.29258 1.19331 0.89551 1.01677 0.80298 1.24083 0.97398 0.90068 0.97115 1.21665 1.09376 1.00810 0.97439 1.22834 1.00106 0.82917 1.01220 1.50166 1.46761 1.06378 1.21429 1.21990 0.83942 0.72944 0.83432 1.93074 1.93988 1.51664 1.78772 1.93100 1.53841 1.89097 1.80773 1.77360 1.16303 1.23089 0.96323 1.21454 0.93780 0.87162 0.91431 1.22742 0.98431 0.98115 0.97046 1.22242 0.99711 0.98399 0.94674 1.22017 0.96696 0.98831 0.97437 1.22392 0.97777 0.99938 0.96530 0.93684 0.89037 0.94549 0.84040 0.76872 0.78222 0.93133 0.94320 0.93609 0.90988 0.91171 0.92426 0.90627 0.93242 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.56 11.49 21.65 0.25 -50.31 16 2 C -0.02 -1.09 4.96 84.86 0.42 -0.67 16 3 Si 0.95 43.39 29.60 68.60 2.03 45.42 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -13.29 7.73 84.03 0.65 -12.64 16 8 H 0.05 2.54 6.72 -2.91 -0.02 2.52 16 9 N -0.57 -28.44 2.44 -675.70 -1.65 -30.08 16 10 C 0.22 10.56 5.84 85.63 0.50 11.06 16 11 C 0.08 3.61 6.80 43.10 0.29 3.90 16 12 C -0.26 -10.05 10.74 21.99 0.24 -9.81 16 13 C 0.07 2.11 11.05 83.54 0.92 3.03 16 14 N -0.45 -14.20 3.97 -364.80 -1.45 -15.65 16 15 C 0.51 11.11 6.63 127.77 0.85 11.96 16 16 F -0.19 -5.33 17.36 44.97 0.78 -4.55 16 17 F -0.19 -3.92 17.02 44.97 0.77 -3.16 16 18 N -0.31 -12.41 12.41 -47.39 -0.59 -12.99 16 19 C 0.17 7.39 3.40 46.19 0.16 7.55 16 20 C -0.12 -4.99 6.47 32.01 0.21 -4.78 16 21 C -0.11 -3.57 6.82 31.67 0.22 -3.35 16 22 C -0.11 -3.64 6.80 31.32 0.21 -3.43 16 23 C -0.13 -5.23 6.41 31.32 0.20 -5.03 16 24 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 25 H 0.09 4.82 5.56 -2.39 -0.01 4.80 16 26 H 0.04 1.71 7.92 -2.39 -0.02 1.69 16 27 H 0.14 5.43 8.06 -2.91 -0.02 5.40 16 28 H 0.21 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.20 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 2.22 7.84 -2.39 -0.02 2.20 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.38 6.92 -2.38 -0.02 2.36 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -64.57 322.26 6.07 -58.51 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.06 Total: 15.03 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.86 Total: -2.21 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.44 Total: -109.04 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 1.55 Total: -7.71 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.57 6.07 -58.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347681746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.795 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds