Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47165 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47045 * 30.00374 * 3 2 1 6 6 H 1.48502 * 109.46894 * 150.00113 * 3 2 1 7 7 C 1.37886 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99747 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99977 * 190.00443 * 10 9 7 12 12 C 1.50700 * 109.47310 * 75.83331 * 11 10 9 13 13 C 1.38739 * 119.79420 * 84.39223 * 12 11 10 14 14 C 1.37849 * 120.68564 * 179.97438 * 13 12 11 15 15 C 1.38940 * 119.81789 * 359.97438 * 14 13 12 16 16 O 1.34806 * 133.49314 * 180.02562 * 15 14 13 17 17 C 1.34449 * 110.88792 * 179.97438 * 16 15 14 18 18 C 1.33991 * 110.15368 * 359.97438 * 17 16 15 19 19 C 1.40489 * 119.22074 * 0.02562 * 15 14 13 20 20 C 1.36739 * 119.78705 * 264.36980 * 12 11 10 21 21 C 1.46897 * 110.99738 * 66.04833 * 10 9 7 22 22 C 1.53001 * 109.46815 * 199.45728 * 21 10 9 23 23 C 1.53008 * 117.49640 * 243.55535 * 22 21 10 24 24 C 1.53000 * 117.49793 * 174.89802 * 22 21 10 25 25 H 0.96996 * 119.99949 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47419 * 60.00796 * 9 7 2 27 27 H 1.09001 * 109.47483 * 300.00044 * 9 7 2 28 28 H 1.08997 * 109.46914 * 315.83038 * 11 10 9 29 29 H 1.08998 * 109.46954 * 195.83104 * 11 10 9 30 30 H 1.08003 * 119.65570 * 359.97438 * 13 12 11 31 31 H 1.08006 * 120.08874 * 180.02562 * 14 13 12 32 32 H 1.07999 * 124.92548 * 179.97438 * 17 16 15 33 33 H 1.08005 * 126.90704 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.14147 * 359.97438 * 20 12 11 35 35 H 1.09003 * 109.47035 * 319.44849 * 21 10 9 36 36 H 1.08997 * 109.47324 * 79.45483 * 21 10 9 37 37 H 1.09001 * 115.55675 * 29.21677 * 22 21 10 38 38 H 1.09005 * 117.49379 * 359.97438 * 23 22 21 39 39 H 1.09001 * 117.50044 * 145.01996 * 23 22 21 40 40 H 1.08997 * 117.49711 * 214.97222 * 24 22 21 41 41 H 1.08993 * 117.50259 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5212 -4.8935 -0.2388 12 6 1.1648 -5.0080 -1.6986 13 6 2.1053 -5.4798 -2.6028 14 6 1.7988 -5.5925 -3.9421 15 6 0.5358 -5.2312 -4.3946 16 8 -0.0489 -5.2282 -5.6092 17 6 -1.3141 -4.7800 -5.5311 18 6 -1.6165 -4.4696 -4.2632 19 6 -0.4120 -4.7541 -3.4738 20 6 -0.0836 -4.6465 -2.1233 21 6 2.9709 -3.6541 1.2528 22 6 4.2451 -4.4758 1.0474 23 6 4.3943 -5.7631 1.8608 24 6 5.2414 -4.5360 2.2069 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8904 27 1 0.6247 -2.5571 0.8897 28 1 0.6125 -4.9363 0.3616 29 1 2.1799 -5.7160 0.0399 30 1 3.0877 -5.7618 -2.2539 31 1 2.5382 -5.9614 -4.6376 32 1 -1.9889 -4.6841 -6.3689 33 1 -2.5571 -4.0865 -3.8959 34 1 -0.8125 -4.2805 -1.4154 35 1 3.2369 -2.6388 1.5473 36 1 2.3651 -4.1123 2.0345 37 1 4.6502 -4.4702 0.0355 38 1 3.5849 -6.0243 2.5425 39 1 4.8980 -6.6041 1.3842 40 1 6.3020 -4.5703 1.9579 41 1 4.9895 -3.9899 3.1159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347821972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = 57.172911 kcal Electronic energy + Delta-G solvation = -22021.532411 eV Core-core repulsion = 18868.623184 eV Total energy + Delta-G solvation = -3152.909227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11393 -38.47564 -37.28228 -35.24881 -32.60063 -32.44361 -30.70404 -29.07391 -27.43372 -26.42823 -24.05943 -22.59324 -22.15931 -21.56482 -21.01454 -20.42722 -19.62112 -17.16597 -16.74525 -16.45995 -15.81175 -15.40321 -15.06304 -14.83672 -14.08392 -13.92013 -13.80211 -13.70896 -13.02662 -12.82639 -12.65650 -12.41982 -11.87594 -11.82022 -11.56515 -11.38215 -11.25617 -10.95709 -10.90508 -10.65802 -10.55890 -10.49509 -10.10120 -9.91701 -9.64297 -9.49563 -9.14363 -8.41162 -8.11007 -7.90231 -7.24899 -6.00821 -4.01107 1.26579 1.72494 2.63756 3.04846 3.33364 3.39325 3.42638 4.02541 4.14055 4.45338 4.71023 4.88202 4.97144 5.16655 5.26320 5.29777 5.31695 5.35500 5.45277 5.59177 5.71017 5.73168 5.81249 5.86170 5.90201 5.97353 6.12255 6.14417 6.21791 6.31884 6.33322 6.51115 6.54063 6.57395 6.71333 6.81626 6.97141 7.03290 7.32673 7.35137 7.46123 7.82755 8.12107 8.22721 8.56156 9.06372 9.62575 11.10057 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.006074 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.678368 B = 4608.902640 C = 6655.797336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.190 3.810 10 N -0.528 5.528 11 C 0.093 3.907 12 C -0.074 4.074 13 C -0.066 4.066 14 C -0.117 4.117 15 C 0.044 3.956 16 O -0.202 6.202 17 C -0.009 4.009 18 C -0.202 4.202 19 C -0.133 4.133 20 C -0.054 4.054 21 C 0.091 3.909 22 C -0.132 4.132 23 C -0.192 4.192 24 C -0.184 4.184 25 H 0.260 0.740 26 H 0.037 0.963 27 H -0.012 1.012 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.203 0.797 33 H 0.155 0.845 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -12.662 -4.205 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.252 5.252 11 C -0.035 4.035 12 C -0.074 4.074 13 C -0.085 4.085 14 C -0.136 4.136 15 C -0.003 4.003 16 O -0.104 6.104 17 C -0.073 4.073 18 C -0.222 4.222 19 C -0.134 4.134 20 C -0.073 4.073 21 C -0.037 4.037 22 C -0.150 4.150 23 C -0.229 4.229 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.006 0.994 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.219 0.781 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.859 -12.536 -4.803 13.552 hybrid contribution -0.420 1.071 0.664 1.329 sum 1.438 -11.464 -4.139 12.273 Atomic orbital electron populations 1.69953 1.06012 1.26648 1.51147 1.24967 0.94833 0.99195 0.95530 0.86546 0.79758 0.83291 0.78120 1.20700 1.21380 1.19828 1.21161 0.93503 0.89931 1.49793 0.91841 1.19800 0.90197 0.87221 0.96230 1.62044 1.27756 1.02136 1.33290 1.20982 0.97409 0.94168 0.90895 1.19431 0.92880 0.98673 0.96446 1.20736 0.98971 0.97725 0.91052 1.19808 0.92512 1.05369 0.95895 1.19613 0.95355 1.02933 0.82419 1.83944 1.25018 1.70828 1.30571 1.23800 0.83927 1.00730 0.98880 1.22538 0.99273 1.07418 0.92928 1.19891 0.94123 1.04628 0.94733 1.20236 0.96809 0.97063 0.93179 1.21596 0.91488 1.00253 0.90398 1.22472 0.98120 0.98090 0.96361 1.23040 1.03160 0.92142 1.04560 1.22900 0.96778 1.02014 1.00469 0.93025 0.94483 0.99378 0.94867 0.90871 0.85022 0.85602 0.78050 0.82755 0.85702 0.89030 0.96059 0.87346 0.89395 0.89515 0.89338 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.08 8.24 -34.44 -0.28 -14.36 16 8 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 9 C 0.19 4.86 4.54 -4.98 -0.02 4.84 16 10 N -0.53 -10.97 4.35 -237.52 -1.03 -12.00 16 11 C 0.09 1.65 4.93 -4.98 -0.02 1.62 16 12 C -0.07 -1.30 5.01 -104.98 -0.53 -1.82 16 13 C -0.07 -1.04 9.68 -39.54 -0.38 -1.43 16 14 C -0.12 -1.80 10.07 -39.46 -0.40 -2.20 16 15 C 0.04 0.74 7.42 -38.47 -0.29 0.45 16 16 O -0.20 -3.12 10.58 3.92 0.04 -3.07 16 17 C -0.01 -0.11 11.96 29.24 0.35 0.24 16 18 C -0.20 -2.98 11.14 -37.62 -0.42 -3.40 16 19 C -0.13 -2.34 6.40 -105.16 -0.67 -3.01 16 20 C -0.05 -0.99 8.37 -39.69 -0.33 -1.33 16 21 C 0.09 1.70 5.07 -3.83 -0.02 1.68 16 22 C -0.13 -2.02 5.15 -90.62 -0.47 -2.48 16 23 C -0.19 -2.43 10.09 -26.69 -0.27 -2.70 16 24 C -0.18 -2.42 10.25 -26.69 -0.27 -2.69 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.04 1.02 6.32 -51.93 -0.33 0.69 16 27 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 28 H 0.03 0.60 7.89 -51.93 -0.41 0.19 16 29 H 0.07 1.13 7.19 -51.93 -0.37 0.75 16 30 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.13 2.31 7.97 -52.49 -0.42 1.89 16 35 H 0.09 1.94 6.58 -51.93 -0.34 1.59 16 36 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 37 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -31.11 343.10 -10.24 -41.35 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.01 Total: 2.76 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -4.12 Total: -25.09 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.30 Total: -37.88 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.11 -10.24 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347821972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.526 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds