Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47165 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47045 * 30.00374 * 3 2 1 6 6 H 1.48502 * 109.46894 * 150.00113 * 3 2 1 7 7 C 1.37886 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99747 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99977 * 190.00443 * 10 9 7 12 12 C 1.50700 * 109.47310 * 75.83331 * 11 10 9 13 13 C 1.38739 * 119.79420 * 84.39223 * 12 11 10 14 14 C 1.37849 * 120.68564 * 179.97438 * 13 12 11 15 15 C 1.38940 * 119.81789 * 359.97438 * 14 13 12 16 16 O 1.34806 * 133.49314 * 180.02562 * 15 14 13 17 17 C 1.34449 * 110.88792 * 179.97438 * 16 15 14 18 18 C 1.33991 * 110.15368 * 359.97438 * 17 16 15 19 19 C 1.40489 * 119.22074 * 0.02562 * 15 14 13 20 20 C 1.36739 * 119.78705 * 264.36980 * 12 11 10 21 21 C 1.46897 * 110.99738 * 66.04833 * 10 9 7 22 22 C 1.53001 * 109.46815 * 199.45728 * 21 10 9 23 23 C 1.53008 * 117.49640 * 243.55535 * 22 21 10 24 24 C 1.53000 * 117.49793 * 174.89802 * 22 21 10 25 25 H 0.96996 * 119.99949 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47419 * 60.00796 * 9 7 2 27 27 H 1.09001 * 109.47483 * 300.00044 * 9 7 2 28 28 H 1.08997 * 109.46914 * 315.83038 * 11 10 9 29 29 H 1.08998 * 109.46954 * 195.83104 * 11 10 9 30 30 H 1.08003 * 119.65570 * 359.97438 * 13 12 11 31 31 H 1.08006 * 120.08874 * 180.02562 * 14 13 12 32 32 H 1.07999 * 124.92548 * 179.97438 * 17 16 15 33 33 H 1.08005 * 126.90704 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.14147 * 359.97438 * 20 12 11 35 35 H 1.09003 * 109.47035 * 319.44849 * 21 10 9 36 36 H 1.08997 * 109.47324 * 79.45483 * 21 10 9 37 37 H 1.09001 * 115.55675 * 29.21677 * 22 21 10 38 38 H 1.09005 * 117.49379 * 359.97438 * 23 22 21 39 39 H 1.09001 * 117.50044 * 145.01996 * 23 22 21 40 40 H 1.08997 * 117.49711 * 214.97222 * 24 22 21 41 41 H 1.08993 * 117.50259 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5212 -4.8935 -0.2388 12 6 1.1648 -5.0080 -1.6986 13 6 2.1053 -5.4798 -2.6028 14 6 1.7988 -5.5925 -3.9421 15 6 0.5358 -5.2312 -4.3946 16 8 -0.0489 -5.2282 -5.6092 17 6 -1.3141 -4.7800 -5.5311 18 6 -1.6165 -4.4696 -4.2632 19 6 -0.4120 -4.7541 -3.4738 20 6 -0.0836 -4.6465 -2.1233 21 6 2.9709 -3.6541 1.2528 22 6 4.2451 -4.4758 1.0474 23 6 4.3943 -5.7631 1.8608 24 6 5.2414 -4.5360 2.2069 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8904 27 1 0.6247 -2.5571 0.8897 28 1 0.6125 -4.9363 0.3616 29 1 2.1799 -5.7160 0.0399 30 1 3.0877 -5.7618 -2.2539 31 1 2.5382 -5.9614 -4.6376 32 1 -1.9889 -4.6841 -6.3689 33 1 -2.5571 -4.0865 -3.8959 34 1 -0.8125 -4.2805 -1.4154 35 1 3.2369 -2.6388 1.5473 36 1 2.3651 -4.1123 2.0345 37 1 4.6502 -4.4702 0.0355 38 1 3.5849 -6.0243 2.5425 39 1 4.8980 -6.6041 1.3842 40 1 6.3020 -4.5703 1.9579 41 1 4.9895 -3.9899 3.1159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347821972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = 40.018863 kcal Electronic energy + Delta-G solvation = -22022.276267 eV Core-core repulsion = 18868.623184 eV Total energy + Delta-G solvation = -3153.653082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.29871 -39.87907 -38.52488 -36.72870 -34.63040 -33.68217 -32.11131 -30.30902 -29.36633 -27.83874 -25.84494 -23.85574 -23.31059 -23.02459 -22.19922 -21.82946 -21.02766 -18.62664 -18.30956 -17.90822 -17.02393 -16.79988 -16.67126 -16.43218 -15.67239 -15.22153 -15.16712 -15.07964 -14.41593 -14.35983 -13.99948 -13.65025 -13.54818 -13.48584 -13.05170 -12.99426 -12.67358 -12.52782 -12.38323 -12.25159 -12.11651 -11.88150 -11.80209 -11.28789 -11.10011 -11.00803 -10.69842 -10.55673 -9.42710 -9.12461 -8.97799 -8.19652 -6.28290 0.05115 0.40578 1.38603 1.40189 1.49595 1.50937 1.92716 2.39309 2.70567 3.02083 3.13160 3.41382 3.59812 3.79877 3.92623 4.07164 4.13982 4.17246 4.22848 4.33754 4.39066 4.52870 4.57603 4.63957 4.68924 4.80412 4.85624 4.89554 4.96516 5.00748 5.11195 5.22224 5.28604 5.31613 5.35183 5.36818 5.49071 5.51697 5.64824 5.71794 5.73904 6.08451 6.24511 6.39848 6.65352 6.88258 7.40462 8.91301 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.006074 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.678368 B = 4608.902640 C = 6655.797336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.529 5.529 11 C 0.099 3.901 12 C -0.086 4.086 13 C -0.072 4.072 14 C -0.109 4.109 15 C 0.024 3.976 16 O -0.205 6.205 17 C 0.018 3.982 18 C -0.237 4.237 19 C -0.157 4.157 20 C -0.083 4.083 21 C 0.095 3.905 22 C -0.151 4.151 23 C -0.170 4.170 24 C -0.176 4.176 25 H 0.262 0.738 26 H 0.011 0.989 27 H -0.045 1.045 28 H 0.021 0.979 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.256 0.744 33 H 0.167 0.833 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -13.648 -5.423 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.253 5.253 11 C -0.029 4.029 12 C -0.086 4.086 13 C -0.090 4.090 14 C -0.128 4.128 15 C -0.023 4.023 16 O -0.107 6.107 17 C -0.046 4.046 18 C -0.256 4.256 19 C -0.158 4.158 20 C -0.102 4.102 21 C -0.033 4.033 22 C -0.170 4.170 23 C -0.207 4.207 24 C -0.214 4.214 25 H 0.071 0.929 26 H 0.029 0.971 27 H -0.027 1.027 28 H 0.039 0.961 29 H 0.121 0.879 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.271 0.729 33 H 0.184 0.816 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.813 -13.544 -6.013 15.301 hybrid contribution -1.091 1.328 1.010 1.993 sum 2.722 -12.216 -5.003 13.479 Atomic orbital electron populations 1.70090 1.07648 1.27644 1.52040 1.25871 0.95698 1.03006 0.95041 0.85465 0.78756 0.78633 0.78295 1.20221 1.20742 1.18643 1.21464 0.93543 0.91143 1.49533 0.91997 1.19387 0.90199 0.88805 0.93361 1.61983 1.26646 1.02166 1.34498 1.21010 0.97245 0.93348 0.91260 1.19538 0.93161 0.99287 0.96654 1.20995 0.99497 0.97487 0.91019 1.20216 0.92557 1.03745 0.96237 1.19930 0.95972 1.03576 0.82788 1.83962 1.26067 1.70834 1.29803 1.24760 0.83047 0.97238 0.99590 1.22841 0.99383 1.09624 0.93716 1.20280 0.95978 1.04885 0.94696 1.20226 0.97281 0.98976 0.93715 1.21530 0.92980 0.99379 0.89441 1.22201 0.97183 1.00331 0.97255 1.23119 1.02775 0.91801 1.02980 1.23004 0.97408 1.01952 0.98996 0.92883 0.97108 1.02717 0.96109 0.87907 0.82435 0.82331 0.72869 0.81556 0.87846 0.92189 0.96044 0.87590 0.89192 0.87131 0.87446 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.52 -29.94 8.24 25.60 0.21 -29.73 16 8 H 0.06 3.52 7.31 -2.91 -0.02 3.50 16 9 C 0.21 11.32 4.54 85.55 0.39 11.71 16 10 N -0.53 -22.75 4.35 -905.38 -3.93 -26.68 16 11 C 0.10 3.59 4.93 85.56 0.42 4.01 16 12 C -0.09 -3.11 5.01 -20.10 -0.10 -3.21 16 13 C -0.07 -2.19 9.68 22.30 0.22 -1.97 16 14 C -0.11 -3.19 10.07 22.35 0.23 -2.96 16 15 C 0.02 0.81 7.42 22.99 0.17 0.98 16 16 O -0.20 -5.95 10.58 -8.90 -0.09 -6.05 16 17 C 0.02 0.41 11.96 66.85 0.80 1.21 16 18 C -0.24 -6.97 11.14 23.54 0.26 -6.71 16 19 C -0.16 -5.72 6.40 -20.21 -0.13 -5.84 16 20 C -0.08 -3.26 8.37 22.20 0.19 -3.07 16 21 C 0.09 3.62 5.07 86.30 0.44 4.06 16 22 C -0.15 -4.41 5.15 -10.79 -0.06 -4.47 16 23 C -0.17 -3.80 10.09 30.62 0.31 -3.49 16 24 C -0.18 -4.22 10.25 30.62 0.31 -3.90 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.01 0.64 6.32 -2.39 -0.02 0.63 16 27 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 28 H 0.02 0.80 7.89 -2.39 -0.02 0.78 16 29 H 0.10 3.07 7.19 -2.39 -0.02 3.05 16 30 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.26 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 34 H 0.10 4.31 7.97 -2.91 -0.02 4.29 16 35 H 0.06 2.64 6.58 -2.39 -0.02 2.62 16 36 H 0.02 0.80 7.74 -2.39 -0.02 0.78 16 37 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.09 2.01 8.03 -2.38 -0.02 1.99 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.71 343.10 3.41 -67.30 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.01 Total: 17.99 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.12 Total: -42.84 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -3.65 Total: -83.74 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.09 Total: -6.05 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.71 3.41 -67.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347821972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.318 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds