Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48500 * 109.46936 * 240.00136 * 3 2 1 5 5 H 1.48503 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.37880 * 119.99411 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 175.14247 * 7 2 1 9 9 C 1.50702 * 120.00225 * 355.42108 * 7 2 1 10 10 C 1.53004 * 115.54830 * 274.92669 * 9 7 2 11 11 N 1.46900 * 109.47039 * 296.30704 * 10 9 7 12 12 C 1.46896 * 110.99985 * 174.87700 * 11 10 9 13 13 C 1.50699 * 109.47149 * 179.97438 * 12 11 10 14 14 C 1.39869 * 126.03943 * 269.69264 * 13 12 11 15 15 N 1.30845 * 108.20448 * 179.81851 * 14 13 12 16 16 N 1.40092 * 108.20175 * 0.43376 * 15 14 13 17 17 C 1.46501 * 126.03429 * 179.69668 * 16 15 14 18 18 C 1.52995 * 109.47095 * 305.02855 * 17 16 15 19 19 F 1.39905 * 109.46617 * 175.00099 * 18 17 16 20 20 F 1.39895 * 109.47034 * 294.99554 * 18 17 16 21 21 C 1.34952 * 107.92344 * 359.72222 * 16 15 14 22 22 C 1.52992 * 117.49932 * 129.25596 * 9 7 2 23 23 C 1.52992 * 117.50106 * 60.59321 * 9 7 2 24 24 H 0.96999 * 119.99153 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47140 * 56.30262 * 10 9 7 26 26 H 1.08993 * 109.47118 * 176.30444 * 10 9 7 27 27 H 1.00898 * 110.99671 * 298.82875 * 11 10 9 28 28 H 1.09003 * 109.46912 * 299.99227 * 12 11 10 29 29 H 1.08999 * 109.47563 * 59.99871 * 12 11 10 30 30 H 1.07995 * 125.89941 * 359.97438 * 14 13 12 31 31 H 1.08998 * 109.46520 * 65.03111 * 17 16 15 32 32 H 1.09004 * 109.46528 * 185.02580 * 17 16 15 33 33 H 1.08998 * 109.47577 * 55.00285 * 18 17 16 34 34 H 1.08001 * 126.12029 * 179.97438 * 21 16 15 35 35 H 1.08997 * 117.50184 * 0.02562 * 22 9 7 36 36 H 1.09003 * 117.49948 * 145.01909 * 22 9 7 37 37 H 1.09007 * 117.50107 * 214.98374 * 23 9 7 38 38 H 1.09000 * 117.49989 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1960 -0.0787 9 6 1.2545 -2.4971 0.1053 10 6 0.9187 -2.9527 1.5268 11 7 2.1623 -3.2130 2.2642 12 6 1.8831 -3.5356 3.6698 13 6 3.1796 -3.7964 4.3924 14 6 3.8122 -5.0367 4.5260 15 7 4.9125 -4.8625 5.2124 16 7 5.0098 -3.5055 5.5463 17 6 6.0882 -2.8831 6.3184 18 6 6.2379 -3.6052 7.6589 19 9 7.3397 -3.0862 8.3474 20 9 5.0805 -3.4171 8.4217 21 6 3.9345 -2.8730 5.0316 22 6 1.5728 -3.5804 -0.9271 23 6 0.2451 -2.8218 -0.9975 24 1 -0.4849 0.8401 -0.0004 25 1 0.3521 -2.1720 2.0342 26 1 0.3235 -3.8648 1.4849 27 1 2.6968 -3.9468 1.8240 28 1 1.3673 -2.6980 4.1393 29 1 1.2542 -4.4244 3.7207 30 1 3.4556 -5.9755 4.1288 31 1 7.0220 -2.9545 5.7608 32 1 5.8497 -1.8343 6.4951 33 1 6.3882 -4.6703 7.4831 34 1 3.7156 -1.8187 5.1153 35 1 2.3249 -3.3509 -1.6819 36 1 1.5426 -4.6177 -0.5938 37 1 -0.6581 -3.3604 -0.7105 38 1 0.1231 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353289816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = 3.121831 kcal Electronic energy + Delta-G solvation = -21847.605620 eV Core-core repulsion = 18170.415784 eV Total energy + Delta-G solvation = -3677.189836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.36217 -47.36717 -41.20592 -37.00882 -34.93205 -33.64559 -31.78269 -30.40655 -29.18506 -26.05370 -25.06520 -23.96185 -22.82810 -21.02088 -20.95117 -20.14275 -18.93536 -18.11976 -17.80204 -17.04366 -16.32187 -15.97657 -15.02456 -14.88519 -14.43205 -14.38019 -14.16699 -13.73139 -13.71264 -13.59256 -13.56702 -13.15848 -12.85619 -12.62178 -12.24551 -11.84592 -11.53356 -11.39698 -11.18984 -10.84164 -10.66814 -10.47712 -10.41627 -10.09842 -9.48726 -9.34563 -8.87280 -8.45446 -8.28634 -7.96483 -7.46403 -5.90804 -3.92695 1.80649 2.17675 2.83603 3.23224 3.37190 3.41441 3.44869 3.81911 4.03951 4.32014 4.50484 4.61478 4.84778 4.97684 5.01735 5.09748 5.38694 5.49426 5.50435 5.59164 5.81551 6.07567 6.19613 6.34365 6.38811 6.54602 6.62322 6.69006 6.80422 6.88843 6.94281 7.20492 7.56596 7.61298 7.62084 7.99737 8.03186 8.22740 8.61241 9.05944 9.69868 11.18396 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003622 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.875600 B = 7728.965800 C = 8663.958617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.466 4.466 8 H 0.057 0.943 9 C 0.050 3.950 10 C 0.107 3.893 11 N -0.665 5.665 12 C 0.134 3.866 13 C -0.217 4.217 14 C 0.065 3.935 15 N -0.308 5.308 16 N -0.386 5.386 17 C 0.094 3.906 18 C 0.254 3.746 19 F -0.199 7.199 20 F -0.199 7.199 21 C 0.085 3.915 22 C -0.217 4.217 23 C -0.153 4.153 24 H 0.257 0.743 25 H 0.071 0.929 26 H -0.004 1.004 27 H 0.331 0.669 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.182 0.818 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.177 0.823 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -7.706 13.159 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.049 3.951 10 C -0.021 4.021 11 N -0.295 5.295 12 C 0.004 3.996 13 C -0.228 4.228 14 C -0.122 4.122 15 N -0.129 5.129 16 N -0.169 5.169 17 C -0.030 4.030 18 C 0.199 3.801 19 F -0.180 7.180 20 F -0.180 7.180 21 C -0.060 4.060 22 C -0.255 4.255 23 C -0.191 4.191 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.148 0.852 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.199 0.801 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.194 0.806 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.980 -7.365 13.902 18.631 hybrid contribution -0.639 0.564 -0.364 0.927 sum 9.341 -6.801 13.538 17.799 Atomic orbital electron populations 1.70012 1.05737 1.26122 1.50665 1.24928 0.94748 0.98629 0.95175 0.86734 0.79599 0.83521 0.78485 1.20563 1.21599 1.20350 1.20252 0.92451 0.88479 1.49255 0.92505 1.18816 0.97580 0.92951 0.85707 1.21536 0.88640 0.96375 0.95581 1.60325 1.21501 1.47657 1.00040 1.20155 0.90683 0.98934 0.89812 1.20128 1.02001 0.92228 1.08469 1.23822 0.92213 0.99069 0.97141 1.77223 1.21231 0.93199 1.21205 1.48081 1.18758 1.06540 1.43518 1.22548 0.92147 0.98187 0.90119 1.22161 0.71951 1.00605 0.85353 1.93011 1.54108 1.89419 1.81478 1.93022 1.50173 1.96792 1.78034 1.22403 0.87403 0.99389 0.96822 1.22990 1.00586 0.95514 1.06381 1.22493 0.90565 1.01551 1.04518 0.93337 0.91019 0.98637 0.85220 0.90834 0.95572 0.80076 0.86716 0.86297 0.85971 0.80586 0.90679 0.92277 0.92329 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 12.65 55.43 0.70 -24.29 16 2 C 0.07 1.82 5.43 -17.82 -0.10 1.72 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.47 -12.58 8.71 -34.44 -0.30 -12.88 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.21 1.64 -155.67 -0.25 0.95 16 10 C 0.11 2.31 5.51 -3.82 -0.02 2.29 16 11 N -0.67 -12.45 6.34 -115.06 -0.73 -13.18 16 12 C 0.13 2.06 6.16 -4.98 -0.03 2.03 16 13 C -0.22 -3.02 5.61 -105.05 -0.59 -3.61 16 14 C 0.06 0.83 11.96 -17.36 -0.21 0.62 16 15 N -0.31 -4.06 12.34 30.62 0.38 -3.68 16 16 N -0.39 -4.57 3.66 -61.37 -0.22 -4.80 16 17 C 0.09 0.77 6.70 -4.04 -0.03 0.75 16 18 C 0.25 2.18 5.43 37.15 0.20 2.38 16 19 F -0.20 -1.79 17.34 2.25 0.04 -1.75 16 20 F -0.20 -2.22 17.32 2.25 0.04 -2.19 16 21 C 0.08 1.09 11.36 -17.22 -0.20 0.90 16 22 C -0.22 -4.71 9.96 -26.70 -0.27 -4.97 16 23 C -0.15 -3.61 9.15 -26.70 -0.24 -3.85 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 26 H 0.00 -0.09 8.10 -51.93 -0.42 -0.51 16 27 H 0.33 5.95 8.78 -39.29 -0.34 5.61 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.12 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.12 0.96 8.05 -51.93 -0.42 0.54 16 34 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -30.45 338.50 -7.12 -37.57 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.38 Total: 4.66 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.03 Total: -13.68 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.12 Total: -45.95 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.45 -7.12 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353289816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.694 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds